Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog HcpR - Desulfovibrionales

Properties
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode:
Biological process: Nitrosative stress response
Effector: Nitric oxide
Phylum: Proteobacteria/delta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 25 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Desulfovibrio vulgaris Hildenborough 5 3
Desulfovibrio vulgaris str. Miyazaki F 3 2
Desulfovibrio desulfuricans G20 6 4
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Desulfovibrio piger ATCC 29098
Desulfovibrio salexigens DSM 2638 6 4
Desulfovibrio magneticus RS-1 8 4
Lawsonia intracellularis PHE/MN1-00
Desulfomicrobium baculatum DSM 4028 5 4
Desulfohalobium retbaense DSM 5692 3 3
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
DVU1080
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -234
score = 4.41419
sequence = GTGTGACCCGCGTCACAG

Gene: DVU1080: nitrite and sulphite reductase 4Fe-4S region
 
Desulfovibrio vulgaris str. Miyazaki F
*
Desulfovibrio desulfuricans G20

Site:
position = -80
score = 4.54509
sequence = ATGTGACCTGCATCACAG

Gene: Dde_2390: nitrite and sulphite reductase 4Fe-4S region
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
*
Desulfovibrio salexigens DSM 2638

Site:
position = -77
score = 4.03772
sequence = AAATGACTTAAGTCAGGG

Gene: Desal_2852: nitrite and sulphite reductase 4Fe-4S region
*
Desulfovibrio magneticus RS-1

Site:
position = -93
score = 5.25858
sequence = GCTTGACGTAAGTCAAGG

Gene: DMR_35330: nitrite and sulphite reductase 4Fe-4S region
 
Lawsonia intracellularis PHE/MN1-00
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -52
score = 6.06698
sequence = TTTTGACCTAGGTCAAGG

Gene: Dbac_1379: nitrite and sulphite reductase 4Fe-4S region
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1278: nitrite and sulphite reductase 4Fe-4S region
nitrite and sulphite reductase 4Fe-4S region
DVU1081
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU1081: 4Fe-4S ferredoxin iron-sulfur binding domain protein
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20

Gene: Dde_2389: 4Fe-4S ferredoxin iron-sulfur binding domain protein
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0525: 4Fe-4S ferredoxin iron-sulfur binding domain protein
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_00341: 4Fe-4S ferredoxin iron-sulfur binding domain protein
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2851: 4Fe-4S ferredoxin iron-sulfur binding domain protein
 
Desulfovibrio magneticus RS-1

Gene: DMR_35340: 4Fe-4S ferredoxin iron-sulfur binding domain protein
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1378: 4Fe-4S ferredoxin iron-sulfur binding domain protein
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1277: 4Fe-4S ferredoxin iron-sulfur binding domain protein
4Fe-4S ferredoxin iron-sulfur binding domain protein
 
CRON 2.
DMR_12610
 
Desulfovibrio vulgaris Hildenborough
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
*
Desulfovibrio magneticus RS-1

Site:
position = -64
score = 5.04408
sequence = ATTTGACTTAGGTCATGT

Gene: DMR_12610: hypothetical protein
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
hypothetical protein
Dbac_1921
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -95
score = 4.71836
sequence = CTGTGACCCACGTCACGG

Gene: DVU3251: HPP family protein
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -122
score = 4.3906
sequence = ATGTGACCCCGATCACGG

Gene: DvMF_2445: HPP family protein
*
Desulfovibrio desulfuricans G20

Site:
position = -50
score = 4.79007
sequence = ATGTGACGCAGGTCACAG

Gene: Dde_0503: HPP family protein
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_0524: HPP family protein
 
Desulfovibrio piger ATCC 29098

Gene: DESPIG_00646: HPP family protein
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1

Gene: DMR_12600: HPP family protein
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_1921: HPP family protein
 
Desulfohalobium retbaense DSM 5692
HPP family protein
 
CRON 3.
nrfH
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU0624: Cytochrome c nitrite reductase, small subunit NrfH
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
*
Desulfovibrio salexigens DSM 2638

Site:
position = -151
score = 5.28491
sequence = TTTTGACTTAAGTCATAG

Gene: Desal_0751: Cytochrome c nitrite reductase, small subunit NrfH
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
Cytochrome c nitrite reductase, small subunit NrfH
nrfA
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU0625: Nitrite reductase (cytochrome; ammonia-forming)
 
Desulfovibrio vulgaris str. Miyazaki F
 
Desulfovibrio desulfuricans G20
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_0750: Nitrite reductase (cytochrome; ammonia-forming)
 
Desulfovibrio magneticus RS-1
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
 
Desulfohalobium retbaense DSM 5692
Nitrite reductase (cytochrome; ammonia-forming)
 
CRON 4.
 
CRON 5.
hcpR
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2547: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_0993: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
 
Desulfovibrio desulfuricans G20

Gene: Dde_2644: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
*
Desulfovibrio salexigens DSM 2638

Site:
position = -51
score = 3.90601
sequence = CCCTGACTTAAGTCATTT

Gene: Desal_2853: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
*
Desulfovibrio magneticus RS-1

Site:
position = -41
score = 5.28553
sequence = CCTTGACTTACGTCAAGC

Gene: DMR_35320: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028

Gene: Dbac_2118: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
 
Desulfohalobium retbaense DSM 5692

Gene: Dret_1279: Nitric oxide-resposive transcriptional regulator HcpR, Crp family
Nitric oxide-resposive transcriptional regulator HcpR, Crp family
 
CRON 6.
 
CRON 7.
hcp
*
Desulfovibrio vulgaris Hildenborough

Site:
position = -184
score = 4.75982
sequence = ATTTGACGCACGTCACAA

Gene: DVU2543: Hydroxylamine reductase (EC 1.7.-.-)
*
Desulfovibrio vulgaris str. Miyazaki F

Site:
position = -211
score = 4.74855
sequence = TTTTGATGTCCGTCACAT

Gene: DvMF_0988: Hydroxylamine reductase (EC 1.7.-.-)
*
Desulfovibrio desulfuricans G20

Site:
position = -153
score = 4.62293
sequence = TTGTGACTCCGGTCACAT

Gene: Dde_2641: Hydroxylamine reductase (EC 1.7.-.-)
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
*
Desulfovibrio salexigens DSM 2638

Site:
position = -238
score = 5.1007
sequence = CCTTGACCTGAATCAAAT

Site:
position = -88
score = 5.21945
sequence = TTTTGATCTGAATCAAAT

Gene: Desal_2849: Hydroxylamine reductase (EC 1.7.-.-)
*
Desulfovibrio magneticus RS-1

Site:
position = -94
score = 5.76335
sequence = TTTTGACTTAGGTCAAAC

Gene: DMR_35370: Hydroxylamine reductase (EC 1.7.-.-)
 
Lawsonia intracellularis PHE/MN1-00

Gene: LI1116: Hydroxylamine reductase (EC 1.7.-.-)
*2
Desulfomicrobium baculatum DSM 4028

Site:
position = -82
score = 5.50156
sequence = TTTTGATCCAGCTCAAAG

Gene: Dbac_2941: Hydroxylamine reductase (EC 1.7.-.-)

Site:
position = -94
score = 5.63163
sequence = TTTTGATCTGCGTCAAAG

Gene: Dbac_0596: Hydroxylamine reductase (EC 1.7.-.-)
*
Desulfohalobium retbaense DSM 5692

Site:
position = -121
score = 5.96466
sequence = TTTTGACTCAGGTCAAAG

Gene: Dret_2386: Hydroxylamine reductase (EC 1.7.-.-)
Hydroxylamine reductase (EC 1.7.-.-)
frdX
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU2544: 4Fe-4S ferredoxin iron-sulfur binding domain protein
 
Desulfovibrio vulgaris str. Miyazaki F

Gene: DvMF_0989: 4Fe-4S ferredoxin iron-sulfur binding domain protein
 
Desulfovibrio desulfuricans G20

Gene: Dde_2642: 4Fe-4S ferredoxin iron-sulfur binding domain protein
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638

Gene: Desal_2848: 4Fe-4S ferredoxin iron-sulfur binding domain protein
 
Desulfovibrio magneticus RS-1

Gene: DMR_35380: 4Fe-4S ferredoxin iron-sulfur binding domain protein
 
Lawsonia intracellularis PHE/MN1-00
*
Desulfomicrobium baculatum DSM 4028

Site:
position = -74
score = 5.40134
sequence = TTTTGACATGGCTCAAAG

Gene: Dbac_1823: 4Fe-4S ferredoxin iron-sulfur binding domain protein
*
Desulfohalobium retbaense DSM 5692

Site:
position = -93
score = 5.31763
sequence = ATTTGATCCGCGTCAAAG

Gene: Dret_1280: 4Fe-4S ferredoxin iron-sulfur binding domain protein
4Fe-4S ferredoxin iron-sulfur binding domain protein
Dde_2303
 
Desulfovibrio vulgaris Hildenborough

Gene: DVU1241: Cupin 2 conserved barrel domain protein
 
Desulfovibrio vulgaris str. Miyazaki F
*
Desulfovibrio desulfuricans G20

Site:
position = -111
score = 5.04684
sequence = TTTTGACGTGGGTCACGC

Gene: Dde_2303: Cupin 2 conserved barrel domain protein
 
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774

Gene: Ddes_1164: Cupin 2 conserved barrel domain protein
 
Desulfovibrio piger ATCC 29098
 
Desulfovibrio salexigens DSM 2638
 
Desulfovibrio magneticus RS-1

Gene: DMR_35390: Cupin 2 conserved barrel domain protein
 
Lawsonia intracellularis PHE/MN1-00
 
Desulfomicrobium baculatum DSM 4028
*
Desulfohalobium retbaense DSM 5692

Site:
position = -105
score = 5.6602
sequence = TTTTGATGCAGGTCAAAG

Gene: Dret_2382: Cupin 2 conserved barrel domain protein
Cupin 2 conserved barrel domain protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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