Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog CcpC - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: LysR
Regulation mode: repressor
Biological process: Citrate metabolism
Effector: Citrate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 5 3
Bacillus amyloliquefaciens FZB42 4 2
Bacillus pumilus SAFR-032 2 2
Bacillus licheniformis DSM 13 2 2
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579 1 1
Bacillus halodurans C-125
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831 2 2
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
citZ
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -172
score = 5.08261
sequence = ATAAAAATTTGTTAT

Gene: BSU29140: Citrate synthase (EC 2.3.3.1)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -172
score = 5.45906
sequence = ATAAGAATTTGTTAT

Gene: RBAM_026180: Citrate synthase (EC 2.3.3.1)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2556: Citrate synthase (EC 2.3.3.1)
 
Bacillus licheniformis DSM 13

Gene: BLi03062: Citrate synthase (EC 2.3.3.1)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0504: Citrate synthase (EC 2.3.3.1)
 
Geobacillus kaustophilus HTA426

Gene: GK2736: Citrate synthase (EC 2.3.3.1)
 
Bacillus cereus ATCC 14579

Gene: BC4594: Citrate synthase (EC 2.3.3.1)
 
Bacillus halodurans C-125

Gene: BH3160: Citrate synthase (EC 2.3.3.1)
 
Bacillus clausii KSM-K16

Gene: ABC2715: Citrate synthase (EC 2.3.3.1)
 
Oceanobacillus iheyensis HTE831

Gene: OB2168: Citrate synthase (EC 2.3.3.1)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_4473: Citrate synthase (EC 2.3.3.1)
Citrate synthase (EC 2.3.3.1)
icd
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU29130: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_026170: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2555: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
 
Bacillus licheniformis DSM 13

Gene: BLi03061: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0505: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
 
Geobacillus kaustophilus HTA426

Gene: GK2735: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
 
Bacillus cereus ATCC 14579

Gene: BC4593: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
 
Bacillus halodurans C-125

Gene: BH3159: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
 
Bacillus clausii KSM-K16

Gene: ABC2714: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
 
Oceanobacillus iheyensis HTE831

Gene: OB2167: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_4472: Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)
mdh
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU29120: Malate dehydrogenase (EC 1.1.1.37)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_026160: Malate dehydrogenase (EC 1.1.1.37)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2554: Malate dehydrogenase (EC 1.1.1.37)
 
Bacillus licheniformis DSM 13

Gene: BLi03060: Malate dehydrogenase (EC 1.1.1.37)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0506: Malate dehydrogenase (EC 1.1.1.37)
 
Geobacillus kaustophilus HTA426

Gene: GK2734: Malate dehydrogenase (EC 1.1.1.37)
 
Bacillus cereus ATCC 14579

Gene: BC4592: Malate dehydrogenase (EC 1.1.1.37)
 
Bacillus halodurans C-125

Gene: BH3158: Malate dehydrogenase (EC 1.1.1.37)
 
Bacillus clausii KSM-K16

Gene: ABC2713: Malate dehydrogenase (EC 1.1.1.37)
 
Oceanobacillus iheyensis HTE831

Gene: OB2166: Malate dehydrogenase (EC 1.1.1.37)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_4471: Malate dehydrogenase (EC 1.1.1.37)
Malate dehydrogenase (EC 1.1.1.37)
 
CRON 2.
citB
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -141
score = 5.10347
sequence = ATAAGTCGAACTTAT

Gene: BSU18000: Aconitate hydratase ( EC 4.2.1.3 )
*
Bacillus amyloliquefaciens FZB42

Site:
position = -146
score = 5.26565
sequence = ATAAGACGATCTTAT

Gene: RBAM_017800: Aconitate hydratase ( EC 4.2.1.3 )
*
Bacillus pumilus SAFR-032

Site:
position = -152
score = 5.6586
sequence = ATAAGATAAACTTAT

Gene: BPUM_1699: Aconitate hydratase ( EC 4.2.1.3 )
*
Bacillus licheniformis DSM 13

Site:
position = -147
score = 5.46949
sequence = ATAAGTCATTCTTAT

Gene: BLi02047: Aconitate hydratase ( EC 4.2.1.3 )
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1492: Aconitate hydratase ( EC 4.2.1.3 )
 
Geobacillus kaustophilus HTA426

Gene: GK1347: Aconitate hydratase ( EC 4.2.1.3 )
*
Bacillus cereus ATCC 14579

Site:
position = -145
score = 4.88108
sequence = ATAAAGAAAACTTAT

Gene: BC3616: Aconitate hydratase ( EC 4.2.1.3 )
 
Bacillus halodurans C-125

Gene: BH2299: Aconitate hydratase ( EC 4.2.1.3 )
 
Bacillus clausii KSM-K16

Gene: ABC2157: Aconitate hydratase ( EC 4.2.1.3 )
*
Oceanobacillus iheyensis HTE831

Site:
position = -198
score = 5.44163
sequence = ATAAGATTTTGTTAT

Gene: OB1681: Aconitate hydratase ( EC 4.2.1.3 )
 2
Paenibacillus sp. JDR-2

Gene: Pjdr2_0811: Aconitate hydratase ( EC 4.2.1.3 )

Gene: Pjdr2_2034: Aconitate hydratase ( EC 4.2.1.3 )
Aconitate hydratase ( EC 4.2.1.3 )
 
CRON 3.
ccpC
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -37
score = 5.67603
sequence = ATAAGAAAAACTTAT

Gene: BSU14140: Transcriptional repressor of citB and citZ, LacI family
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_013910: Transcriptional repressor of citB and citZ, LacI family
*
Bacillus pumilus SAFR-032

Site:
position = -34
score = 5.67603
sequence = ATAAGAAAAACTTAT

Gene: BPUM_1310: Transcriptional repressor of citB and citZ, LacI family
*
Bacillus licheniformis DSM 13

Site:
position = -32
score = 5.67603
sequence = ATAAGAAAAACTTAT

Gene: BLi01628: Transcriptional repressor of citB and citZ, LacI family
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC3982: Transcriptional repressor of citB and citZ, LacI family
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
*
Oceanobacillus iheyensis HTE831

Site:
position = -28
score = 5.21054
sequence = ATAATATATACTTAT

Gene: OB1497: Transcriptional repressor of citB and citZ, LacI family
 
Paenibacillus sp. JDR-2
Transcriptional repressor of citB and citZ, LacI family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD