Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog AdaA - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: AraC
Regulation mode: activator
Biological process: DNA alkylation response
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 3 2
Bacillus amyloliquefaciens FZB42 3 1
Bacillus pumilus SAFR-032
Bacillus licheniformis DSM 13 2 1
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579 4 2
Bacillus halodurans C-125
Bacillus clausii KSM-K16 3 2
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2 4 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
adaA
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -187
score = 8.29641
sequence = TTTGTTAT-(0)-CTTGCTAT

Gene: BSU01810: Methylphosphotriester-DNA alkyltransferase / Transcriptional regulator of adaptative response to DNA alkylation, AraC/XylS family
*
Bacillus amyloliquefaciens FZB42

Site:
position = -80
score = 7.45699
sequence = TTTGTTAT-(0)-CTTGCTCC

Gene: RBAM_037970: Methylphosphotriester-DNA alkyltransferase / Transcriptional regulator of adaptative response to DNA alkylation, AraC/XylS family
 
Bacillus pumilus SAFR-032
*
Bacillus licheniformis DSM 13

Site:
position = -82
score = 6.89608
sequence = TTTGTCTT-(0)-CTTGCTGT

Gene: BLi02836: Methylphosphotriester-DNA alkyltransferase / Transcriptional regulator of adaptative response to DNA alkylation, AraC/XylS family
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -80
score = 7.49017
sequence = TTTGTAAT-(0)-CTTGCTCT

Gene: BC3740: Methylphosphotriester-DNA alkyltransferase / Transcriptional regulator of adaptative response to DNA alkylation, AraC/XylS family
 
Bacillus halodurans C-125
*
Bacillus clausii KSM-K16

Site:
position = -137
score = 8.29641
sequence = TTTGTTAT-(0)-CTTGCTAT

Gene: ABC3153: Methylphosphotriester-DNA alkyltransferase / Transcriptional regulator of adaptative response to DNA alkylation, AraC/XylS family
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -83
score = 1.67582
sequence = TTTcGtaA-(0)-TCTTGCgc

Gene: Pjdr2_5363: Methylphosphotriester-DNA alkyltransferase / Transcriptional regulator of adaptative response to DNA alkylation, AraC/XylS family
Methylphosphotriester-DNA alkyltransferase / Transcriptional regulator of adaptative response to DNA alkylation, AraC/XylS family
adaB
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU01820: Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_037960: Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13

Gene: BLi02837: Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC3741: Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16

Gene: ABC3154: Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)
 
Oceanobacillus iheyensis HTE831

Gene: OB0736: Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_5364: Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)
Methylated-DNA--protein-cysteine methyltransferase (EC 2.1.1.63)
alkA
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -97
score = -1.51398
sequence = AGCAAGAT-(0)-AACAAAAT

Gene: BSU01800: DNA-3-methyladenine glycosylase II (EC 3.2.2.21)
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC3742: DNA-3-methyladenine glycosylase II (EC 3.2.2.21)
 
Bacillus halodurans C-125
*
Bacillus clausii KSM-K16

Site:
position = -99
score = -1.51398
sequence = AGCAAGAT-(0)-AACAAAAT

Gene: ABC3152: DNA-3-methyladenine glycosylase II (EC 3.2.2.21)
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -84
score = -1.75007
sequence = gcGCAAGA-(0)-TtaCgAAA

Gene: Pjdr2_5362: DNA-3-methyladenine glycosylase II (EC 3.2.2.21)
DNA-3-methyladenine glycosylase II (EC 3.2.2.21)
exoA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU40880: Exodeoxyribonuclease III (EC 3.1.11.2)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_037950: Exodeoxyribonuclease III (EC 3.1.11.2)
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -57
score = 6.51849
sequence = TTTTCTAT-(0)-TTTGTGAT

Gene: BC3739: Exodeoxyribonuclease III (EC 3.1.11.2)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16

Gene: ABC1955: Exodeoxyribonuclease III (EC 3.1.11.2)
 
Oceanobacillus iheyensis HTE831

Gene: OB0511: Exodeoxyribonuclease III (EC 3.1.11.2)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_0753: Exodeoxyribonuclease III (EC 3.1.11.2)
Exodeoxyribonuclease III (EC 3.1.11.2)
Pjdr2_5361
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_5361: Short-chain dehydrogenase/reductase
Short-chain dehydrogenase/reductase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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