Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog DeoR - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: SorC
Regulation mode: repressor
Biological process: Deoxynucleoside utilization
Effector: Deoxyribose-5-phosphate
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 3 1
Bacillus amyloliquefaciens FZB42 3 1
Bacillus pumilus SAFR-032 3 1
Bacillus licheniformis DSM 13 3 1
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426
Bacillus cereus ATCC 14579 4 1
Bacillus halodurans C-125
Bacillus clausii KSM-K16
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
dra
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -65
score = 4.10052
sequence = ATttACAtAtgTTCAA

Site:
position = -88
score = 6.45608
sequence = TTGAACAAAATTTCAA

Gene: BSU39420: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -84
score = 6.45608
sequence = ATGAACATAATTTCAA

Site:
position = -61
score = 4.10052
sequence = ATttACAtAtgTTCAA

Gene: RBAM_036480: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
*
Bacillus pumilus SAFR-032

Site:
position = -83
score = 6.45608
sequence = ATGAACAAAATTTCAT

Site:
position = -35
score = 4.10052
sequence = ATGAtgAAAgTaTCAt

Gene: BPUM_3587: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
*
Bacillus licheniformis DSM 13

Site:
position = -84
score = 6.38022
sequence = TTGAACAAAATTTCAT

Gene: BLi04229: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -84
score = 6.53194
sequence = ATGAACAAAATTTCAA

Site:
position = -229
score = 4.30049
sequence = tTGAACAcAATTTgcc

Gene: BC1820: Deoxyribose-phosphate aldolase (EC 4.1.2.4)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Deoxyribose-phosphate aldolase (EC 4.1.2.4)
nupC
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU39410: Pyrimidine-nucleoside Na+(H+) cotransporter
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_036470: Pyrimidine-nucleoside Na+(H+) cotransporter
 
Bacillus pumilus SAFR-032

Gene: BPUM_3586: Pyrimidine-nucleoside Na+(H+) cotransporter
 
Bacillus licheniformis DSM 13

Gene: BLi04228: Pyrimidine-nucleoside Na+(H+) cotransporter
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC1821: Pyrimidine-nucleoside Na+(H+) cotransporter
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Pyrimidine-nucleoside Na+(H+) cotransporter
pdp
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU39400: Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_036460: Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
 
Bacillus pumilus SAFR-032

Gene: BPUM_3585: Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
 
Bacillus licheniformis DSM 13

Gene: BLi04227: Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC1822: Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Pyrimidine-nucleoside phosphorylase (EC 2.4.2.2)
cdd
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC1823: cytidine deaminase
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Cytidine deaminase (EC 3.5.4.5)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD