Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog BkdR - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 26 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 8 2
Bacillus amyloliquefaciens FZB42 8 2
Bacillus pumilus SAFR-032 8 2
Bacillus licheniformis DSM 13 8 2
Anoxybacillus flavithermus WK1 8 2
Geobacillus kaustophilus HTA426 8 2
Bacillus cereus ATCC 14579 8 2
Bacillus halodurans C-125 5 1
Bacillus clausii KSM-K16 5 1
Oceanobacillus iheyensis HTE831 7 2
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ptb
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -132
score = 5.60089
sequence = TGCAATAATTTGCA

Gene: BSU24090: Phosphate butyryltransferase (EC 2.3.1.19)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -130
score = 5.82099
sequence = TGCAATAAATTGCA

Gene: RBAM_022370: Phosphate butyryltransferase (EC 2.3.1.19)
*
Bacillus pumilus SAFR-032

Site:
position = -113
score = 4.77616
sequence = TGCAAAAAGTTGCG

Site:
position = -134
score = 5.38331
sequence = TGCAATAAAATGCA

Gene: BPUM_2148: Phosphate butyryltransferase (EC 2.3.1.19)
*
Bacillus licheniformis DSM 13

Site:
position = -112
score = 4.56903
sequence = TGCAAAATCATGCA

Site:
position = -134
score = 5.82099
sequence = TGCAATAAATTGCA

Gene: BLi02586: Phosphate butyryltransferase (EC 2.3.1.19)
*
Anoxybacillus flavithermus WK1

Site:
position = -117
score = 5.21384
sequence = TGCAAAAAGTTGCA

Gene: Aflv_0958: Phosphate butyryltransferase (EC 2.3.1.19)
*
Geobacillus kaustophilus HTA426

Site:
position = -148
score = 5.16322
sequence = TGCAATAATTTGCG

Gene: GK2382: Phosphate butyryltransferase (EC 2.3.1.19)
*
Bacillus cereus ATCC 14579

Site:
position = -184
score = 5.82099
sequence = TGCAATTTATTGCA

Site:
position = -203
score = 5.38331
sequence = TGCAATAAATTGCG

Site:
position = -217
score = 4.94168
sequence = TGCAAAAAATAGCA

Gene: BC4163: Phosphate butyryltransferase (EC 2.3.1.19)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Phosphate butyryltransferase (EC 2.3.1.19)
bcd
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU24080: Leucine dehydrogenase (EC 1.4.1.9)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_022360: Leucine dehydrogenase (EC 1.4.1.9)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2147: Leucine dehydrogenase (EC 1.4.1.9)
 
Bacillus licheniformis DSM 13

Gene: BLi02585: Leucine dehydrogenase (EC 1.4.1.9)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0959: Leucine dehydrogenase (EC 1.4.1.9)
 
Geobacillus kaustophilus HTA426

Gene: GK2381: Leucine dehydrogenase (EC 1.4.1.9)
 
Bacillus cereus ATCC 14579

Gene: BC4162: Leucine dehydrogenase (EC 1.4.1.9)
*
Bacillus halodurans C-125

Site:
position = -226
score = 5.60089
sequence = TGCAATAATTTGCA

Gene: BH2765: Leucine dehydrogenase (EC 1.4.1.9)
*
Bacillus clausii KSM-K16

Site:
position = -150
score = 4.94312
sequence = TGCAAAAATATGCA

Gene: ABC2453: Leucine dehydrogenase (EC 1.4.1.9)
*
Oceanobacillus iheyensis HTE831

Site:
position = -170
score = 5.60089
sequence = TGCAAAATATTGCA

Gene: OB1869: Leucine dehydrogenase (EC 1.4.1.9)
 
Paenibacillus sp. JDR-2
Leucine dehydrogenase (EC 1.4.1.9)
buk
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU24070: Butyrate kinase (EC 2.7.2.7)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_022350: Butyrate kinase (EC 2.7.2.7)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2146: Butyrate kinase (EC 2.7.2.7)
 
Bacillus licheniformis DSM 13

Gene: BLi02584: Butyrate kinase (EC 2.7.2.7)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0960: Butyrate kinase (EC 2.7.2.7)
 
Geobacillus kaustophilus HTA426

Gene: GK2380: Butyrate kinase (EC 2.7.2.7)
 
Bacillus cereus ATCC 14579

Gene: BC4161: Butyrate kinase (EC 2.7.2.7)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831

Gene: OB1868: Butyrate kinase (EC 2.7.2.7)
 
Paenibacillus sp. JDR-2
Butyrate kinase (EC 2.7.2.7)
lpdV
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU24060: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_022340: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2145: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase)
 
Bacillus licheniformis DSM 13

Gene: BLi02583: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0961: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase)
 
Geobacillus kaustophilus HTA426

Gene: GK2379: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase)
 
Bacillus cereus ATCC 14579

Gene: BC4160: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase)
 
Bacillus halodurans C-125

Gene: BH2764: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase)
 
Bacillus clausii KSM-K16

Gene: ABC2452: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase)
 
Oceanobacillus iheyensis HTE831

Gene: OB1867: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2320: Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase)
Branched-chain alpha-keto acid dehydrogenase E3 subunit (dihydrolipoamide dehydrogenase)
bkdAA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU24050: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_022330: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2144: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit)
 
Bacillus licheniformis DSM 13

Gene: BLi02582: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0962: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit)
 
Geobacillus kaustophilus HTA426

Gene: GK2378: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit)
 
Bacillus cereus ATCC 14579

Gene: BC4159: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit)
 
Bacillus halodurans C-125

Gene: BH2763: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit)
 
Bacillus clausii KSM-K16

Gene: ABC2451: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit)
 
Oceanobacillus iheyensis HTE831

Gene: OB1866: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2321: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit)
Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase alpha subunit)
bkdAB
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU24040: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_022320: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2143: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit)
 
Bacillus licheniformis DSM 13

Gene: BLi02581: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0963: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit)
 
Geobacillus kaustophilus HTA426

Gene: GK2377: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit)
 
Bacillus cereus ATCC 14579

Gene: BC4158: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit)
 
Bacillus halodurans C-125

Gene: BH2762: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit)
 
Bacillus clausii KSM-K16

Gene: ABC2450: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit)
 
Oceanobacillus iheyensis HTE831

Gene: OB1865: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2322: Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit)
Branched-chain alpha-keto acid dehydrogenase E1 subunit (2-oxoisovalerate dehydrogenase beta subunit)
bkdB
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU24030: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_022310: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase)
 
Bacillus pumilus SAFR-032

Gene: BPUM_2142: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase)
 
Bacillus licheniformis DSM 13

Gene: BLi02580: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0964: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase)
 
Geobacillus kaustophilus HTA426

Gene: GK2376: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase)
 
Bacillus cereus ATCC 14579

Gene: BC4157: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase)
 
Bacillus halodurans C-125

Gene: BH2761: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase)
 
Bacillus clausii KSM-K16

Gene: ABC2449: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase)
 
Oceanobacillus iheyensis HTE831

Gene: OB1864: Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase)
 
Paenibacillus sp. JDR-2
Branched-chain alpha-keto acid dehydrogenase E2 subunit (lipoamide acyltransferase)
 
CRON 2.
bkdR
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -61
score = 5.60089
sequence = TGCAAATTATTGCA

Site:
position = -31
score = 4.72158
sequence = TGCAAATTTTTTCA

Gene: BSU24100: Transcriptional regulator of isoleucine and valine utilization, Fis family
*
Bacillus amyloliquefaciens FZB42

Site:
position = -31
score = 4.72158
sequence = TGCAAATTTTTTCA

Site:
position = -61
score = 5.60089
sequence = TGCAAATTATTGCA

Gene: RBAM_022380: Transcriptional regulator of isoleucine and valine utilization, Fis family
*
Bacillus pumilus SAFR-032

Site:
position = -61
score = 5.60089
sequence = TGCAATTTTTTGCA

Site:
position = -31
score = 4.72158
sequence = TGCAAATTTTTTCA

Gene: BPUM_2149: Transcriptional regulator of isoleucine and valine utilization, Fis family
*
Bacillus licheniformis DSM 13

Site:
position = -31
score = 4.72158
sequence = TGCAAAATTTTTCA

Site:
position = -61
score = 5.21384
sequence = TGCAAATTGTTGCA

Gene: BLi02587: Transcriptional regulator of isoleucine and valine utilization, Fis family
*
Anoxybacillus flavithermus WK1

Site:
position = -23
score = 5.60089
sequence = TGCAAAAAATTGCA

Gene: Aflv_0957: Transcriptional regulator of isoleucine and valine utilization, Fis family
*
Geobacillus kaustophilus HTA426

Site:
position = -38
score = 4.72158
sequence = TGCAAAAATTGGCA

Gene: GK2383: Transcriptional regulator of isoleucine and valine utilization, Fis family
*
Bacillus cereus ATCC 14579

Site:
position = -41
score = 4.72158
sequence = TGAAAAAATTTGCA

Gene: BC4165: Transcriptional regulator of isoleucine and valine utilization, Fis family
 
Bacillus halodurans C-125

Gene: BH2766: Transcriptional regulator of isoleucine and valine utilization, Fis family
 
Bacillus clausii KSM-K16

Gene: ABC2454: Transcriptional regulator of isoleucine and valine utilization, Fis family
*
Oceanobacillus iheyensis HTE831

Site:
position = -27
score = 5.16322
sequence = TGCAAAATAATGCA

Gene: OB1870: Transcriptional regulator of isoleucine and valine utilization, Fis family
 
Paenibacillus sp. JDR-2
Transcriptional regulator of isoleucine and valine utilization, Fis family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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