Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog RocR - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: Fis
Regulation mode: activator
Biological process: Arginine degradation; Ornithine degradation
Effector: Ornithine; L-citrulline
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 26 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 7 3
Bacillus amyloliquefaciens FZB42 7 3
Bacillus pumilus SAFR-032 3 2
Bacillus licheniformis DSM 13 4 2
Anoxybacillus flavithermus WK1
Geobacillus kaustophilus HTA426 5 2
Bacillus cereus ATCC 14579 1 1
Bacillus halodurans C-125 5 2
Bacillus clausii KSM-K16 2 2
Oceanobacillus iheyensis HTE831
Paenibacillus sp. JDR-2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rocC
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU37760: Arginine/ornithine permease
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_034960: Arginine/ornithine permease
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
*
Geobacillus kaustophilus HTA426

Site:
position = -93
score = 8.05777
sequence = TGAAAAAT-(1)-ATTTTGCA

Site:
position = -168
score = 7.69112
sequence = TGAAAAAA-(1)-TTTTTGCT

Gene: GK0186: Arginine/ornithine permease
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Arginine/ornithine permease
rocA
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -213
score = 8.57841
sequence = CGCAAAAT-(1)-ATTTTGCA

Site:
position = -169
score = 7.97041
sequence = CGCAAAAT-(1)-AATTTGCG

Gene: BSU37780: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -199
score = 7.57413
sequence = CGCAAAGA-(1)-ATTTTGCA

Site:
position = -165
score = 7.8404
sequence = CGCAAAAT-(1)-TCTTTGCG

Gene: RBAM_034980: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
 
Bacillus pumilus SAFR-032

Gene: BPUM_0301: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
 
Bacillus licheniformis DSM 13

Gene: BLi00374: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_0249: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
*
Geobacillus kaustophilus HTA426

Site:
position = -37
score = 7.68317
sequence = CGAAAAAT-(1)-TTTTTGCC

Gene: GK0187: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
 
Bacillus cereus ATCC 14579

Gene: BC0344: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
 
Bacillus halodurans C-125

Gene: BH3940: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
 
Bacillus clausii KSM-K16

Gene: ABC0965: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
 
Oceanobacillus iheyensis HTE831

Gene: OB1349: Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
 
Paenibacillus sp. JDR-2
Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)
rocD
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -175
score = 7.89341
sequence = TGCAAAAG-(1)-ATTTTGCA

Gene: BSU40340: Ornithine aminotransferase (EC 2.6.1.13)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -177
score = 8.71467
sequence = CGCAAAAA-(1)-ATTTTGCG

Gene: RBAM_037250: Ornithine aminotransferase (EC 2.6.1.13)
*
Bacillus pumilus SAFR-032

Site:
position = -137
score = 7.20123
sequence = TGCAAAGA-(1)-ATTTTGCT

Gene: BPUM_3060: Ornithine aminotransferase (EC 2.6.1.13)
*
Bacillus licheniformis DSM 13

Site:
position = -142
score = 8.71467
sequence = CGCAAAAT-(0)-TTTTTGCG

Gene: BLi00422: Ornithine aminotransferase (EC 2.6.1.13)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_2206: Ornithine aminotransferase (EC 2.6.1.13)
 
Geobacillus kaustophilus HTA426

Gene: GK0188: Ornithine aminotransferase (EC 2.6.1.13)
 
Bacillus cereus ATCC 14579

Gene: BC1149: Ornithine aminotransferase (EC 2.6.1.13)
*
Bacillus halodurans C-125

Site:
position = -172
score = 7.96304
sequence = AGAAAAAT-(1)-ATTTTTCG

Site:
position = -215
score = 7.31976
sequence = TGCAAATT-(1)-TTTTTTCG

Gene: BH3943: Ornithine aminotransferase (EC 2.6.1.13)
*
Bacillus clausii KSM-K16

Site:
position = -173
score = 8.4603
sequence = CGCAAAAA-(1)-ATTTTTCG

Site:
position = -140
score = 7.69112
sequence = TGCAAAAA-(1)-TTTTTTCT

Gene: ABC0017: Ornithine aminotransferase (EC 2.6.1.13)
 
Oceanobacillus iheyensis HTE831

Gene: OB2287: Ornithine aminotransferase (EC 2.6.1.13)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_3902: Ornithine aminotransferase (EC 2.6.1.13)
Ornithine aminotransferase (EC 2.6.1.13)
rocG
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU37790: NAD-specific glutamate dehydrogenase (EC 1.4.1.2)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_034990: NAD-specific glutamate dehydrogenase (EC 1.4.1.2)
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK0189: NAD-specific glutamate dehydrogenase (EC 1.4.1.2)
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH3942: NAD-specific glutamate dehydrogenase (EC 1.4.1.2)
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
NAD-specific glutamate dehydrogenase (EC 1.4.1.2)
BH3941
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH3941: Hypothetical protein
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Hypothetical protein
rocE
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU40330: Arginine/ornithine/gamma-aminobutyrate permease
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_037240: Arginine/ornithine/gamma-aminobutyrate permease
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13

Gene: BLi00423: Arginine/ornithine/gamma-aminobutyrate permease
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC0643: Arginine/ornithine/gamma-aminobutyrate permease
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Arginine/ornithine/gamma-aminobutyrate permease
rocF
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU40320: Arginase (EC 3.5.3.1)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_037230: Arginase (EC 3.5.3.1)
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13

Gene: BLi00424: Arginase (EC 3.5.3.1)
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579

Gene: BC0185: Arginase (EC 3.5.3.1)
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Arginase (EC 3.5.3.1)
rocB
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU37770: Putative N-deacylase involved in arginine and ornithine utilization
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_034970: Putative N-deacylase involved in arginine and ornithine utilization
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Putative N-deacylase involved in arginine and ornithine utilization
rocC
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032

Gene: BPUM_3059: Arginine/ornithine permease
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Arginine/ornithine permease
 
CRON 2.
rocR
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -82
score = 7.89341
sequence = TGCAAAAT-(1)-CTTTTGCA

Gene: BSU40350: Transcriptional activator of arginine utilization, Fis family
*
Bacillus amyloliquefaciens FZB42

Site:
position = -59
score = 8.71467
sequence = CGCAAAAT-(1)-TTTTTGCG

Gene: RBAM_037260: Transcriptional activator of arginine utilization, Fis family
*
Bacillus pumilus SAFR-032

Site:
position = -89
score = 7.20123
sequence = AGCAAAAT-(1)-TCTTTGCA

Gene: BPUM_3061: Transcriptional activator of arginine utilization, Fis family
*
Bacillus licheniformis DSM 13

Site:
position = -22
score = 8.71467
sequence = CGCAAAAA-(0)-ATTTTGCG

Gene: BLi00421: Transcriptional activator of arginine utilization, Fis family
 
Anoxybacillus flavithermus WK1
*
Geobacillus kaustophilus HTA426

Site:
position = -159
score = 8.05777
sequence = TGCAAAAT-(1)-ATTTTTCA

Site:
position = -84
score = 7.69112
sequence = AGCAAAAA-(1)-TTTTTTCA

Gene: GK0185: Transcriptional activator of arginine utilization, Fis family
*
Bacillus cereus ATCC 14579

Site:
position = -87
score = 8.21177
sequence = AGCAAAAA-(1)-TTTTTGCG

Gene: BC0473: Transcriptional activator of arginine utilization, Fis family
*
Bacillus halodurans C-125

Site:
position = -116
score = 7.96304
sequence = CGAAAAAT-(1)-ATTTTTCT

Site:
position = -73
score = 7.31976
sequence = CGAAAAAA-(1)-AATTTGCA

Gene: BH3944: Transcriptional activator of arginine utilization, Fis family
*
Bacillus clausii KSM-K16

Site:
position = -95
score = 7.69112
sequence = AGAAAAAA-(1)-TTTTTGCA

Site:
position = -62
score = 8.4603
sequence = CGAAAAAT-(1)-TTTTTGCG

Gene: ABC0016: Transcriptional activator of arginine utilization, Fis family
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Transcriptional activator of arginine utilization, Fis family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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