Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog GlnR - Bacillales

Properties
Regulator type: Transcription factor
Regulator family: MerR
Regulation mode: repressor
Biological process: Nitrogen assimilation
Effector: Feedback-inhibited GlnA, glutamine synthetase
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 45 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Bacillus subtilis subsp. subtilis str. 168 6 3
Bacillus amyloliquefaciens FZB42 5 2
Bacillus pumilus SAFR-032 3 2
Bacillus licheniformis DSM 13 3 2
Anoxybacillus flavithermus WK1 3 2
Geobacillus kaustophilus HTA426 16 3
Bacillus cereus ATCC 14579 4 4
Bacillus halodurans C-125 13 3
Bacillus clausii KSM-K16 1 1
Oceanobacillus iheyensis HTE831 2 1
Paenibacillus sp. JDR-2 7 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
glnR
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -83
score = 5.27987
sequence = ATGTTAAGAATCCTTACAT

Site:
position = -60
score = 5.01197
sequence = TTGACACATAATATAACAT

Gene: BSU17450: Transcriptional regulator of nitrogen excess response, MerR family
*
Bacillus amyloliquefaciens FZB42

Site:
position = -83
score = 5.27987
sequence = ATGTTAAGATTCCTTACAT

Site:
position = -60
score = 5.02699
sequence = TTGACACAAAATATAACAT

Gene: RBAM_017250: Transcriptional regulator of nitrogen excess response, MerR family
*
Bacillus pumilus SAFR-032

Site:
position = -83
score = 5.28827
sequence = ATGTTAATATTCCTAACAT

Site:
position = -60
score = 5.10014
sequence = TTGACATATAATATAACAT

Site:
position = -55
score = 4.63958
sequence = ATATAATATAACATGACAT

Gene: BPUM_1636: Transcriptional regulator of nitrogen excess response, MerR family
*
Bacillus licheniformis DSM 13

Site:
position = -82
score = 5.15183
sequence = ATGTAAAGAATCCTTACAT

Site:
position = -59
score = 5.01197
sequence = TTGACACATTATATAACAT

Gene: BLi01992: Transcriptional regulator of nitrogen excess response, MerR family
*
Anoxybacillus flavithermus WK1

Site:
position = -83
score = 4.84934
sequence = ATGTGATAAAATGTAACGT

Site:
position = -60
score = 4.81044
sequence = TTGACATATAAGTTAACAT

Gene: Aflv_1508: Transcriptional regulator of nitrogen excess response, MerR family
*
Geobacillus kaustophilus HTA426

Site:
position = -82
score = 4.46665
sequence = TTGTGAGGAAACATCACGT

Gene: GK1326: Transcriptional regulator of nitrogen excess response, MerR family
*
Bacillus cereus ATCC 14579

Site:
position = -84
score = 5.3264
sequence = ATGTAAGAAAAGCTAACAT

Site:
position = -62
score = 4.78423
sequence = TTGACACTAAACATAACAT

Gene: BC3706: Transcriptional regulator of nitrogen excess response, MerR family
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
*
Oceanobacillus iheyensis HTE831

Site:
position = -81
score = 5.46946
sequence = ATGTTAGAAATACTAACAT

Gene: OB1650: Transcriptional regulator of nitrogen excess response, MerR family
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2618: Transcriptional regulator of nitrogen excess response, MerR family
Transcriptional regulator of nitrogen excess response, MerR family
glnA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU17460: Glutamine synthetase type I (EC 6.3.1.2)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_017260: Glutamine synthetase type I (EC 6.3.1.2)
 
Bacillus pumilus SAFR-032

Gene: BPUM_1637: Glutamine synthetase type I (EC 6.3.1.2)
 
Bacillus licheniformis DSM 13

Gene: BLi01993: Glutamine synthetase type I (EC 6.3.1.2)
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1507: Glutamine synthetase type I (EC 6.3.1.2)
 
Geobacillus kaustophilus HTA426

Gene: GK1327: Glutamine synthetase type I (EC 6.3.1.2)
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH2360: Glutamine synthetase type I (EC 6.3.1.2)
 
Bacillus clausii KSM-K16

Gene: ABC2179: Glutamine synthetase type I (EC 6.3.1.2)
 
Oceanobacillus iheyensis HTE831

Gene: OB1651: Glutamine synthetase type I (EC 6.3.1.2)
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2619: Glutamine synthetase type I (EC 6.3.1.2)
Glutamine synthetase type I (EC 6.3.1.2)
 
CRON 2.
tnrA
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -82
score = 5.37026
sequence = ATGTTAGAAAATATGACAA

Gene: BSU13310: Transcriptional regulator of nitrogen assimilation, MerR family
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_013130: Transcriptional regulator of nitrogen assimilation, MerR family
*
Bacillus pumilus SAFR-032

Site:
position = -122
score = 4.26715
sequence = TTGTCAACTTTCCTTCCAT

Site:
position = -81
score = 4.8831
sequence = GTGTTATATTTTCTAACAA

Gene: BPUM_1230: Transcriptional regulator of nitrogen assimilation, MerR family
*
Bacillus licheniformis DSM 13

Site:
position = -82
score = 4.92529
sequence = ATGTTAGATTTTCTGACAG

Gene: BLi01490: Transcriptional regulator of nitrogen assimilation, MerR family
*
Anoxybacillus flavithermus WK1

Site:
position = -114
score = 5.20135
sequence = TTGTTACTTTTTATAACAT

Site:
position = -83
score = 5.05869
sequence = TTGTTACTTTTTATAACAA

Site:
position = -28
score = 5.50178
sequence = ATGTTATAAAATATGACAT

Gene: Aflv_1544: Transcriptional regulator of nitrogen assimilation, MerR family
*
Geobacillus kaustophilus HTA426

Site:
position = -87
score = 4.76327
sequence = ATGTTAATTTTATTTACAA

Site:
position = -34
score = 4.70526
sequence = ACGTTAGAAAATATAACGT

Gene: GK1860: Transcriptional regulator of nitrogen assimilation, MerR family
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -111
score = 5.36495
sequence = TTGTAAGAAAATCTAACAT

Gene: BH1494: Transcriptional regulator of nitrogen assimilation, MerR family
*
Bacillus clausii KSM-K16

Site:
position = -100
score = 5.36495
sequence = TTGTTAGATTTTCTTACAT

Gene: ABC1760: Transcriptional regulator of nitrogen assimilation, MerR family
 
Oceanobacillus iheyensis HTE831

Gene: OB0950: Transcriptional regulator of nitrogen assimilation, MerR family
*
Paenibacillus sp. JDR-2

Site:
position = -303
score = 5.47798
sequence = TTGTTAGATAATCTAACAT

Site:
position = -42
score = 4.83615
sequence = GTGTTAGAAAACATTACAT

Gene: Pjdr2_5154: Transcriptional regulator of nitrogen assimilation, MerR family
Transcriptional regulator of nitrogen assimilation, MerR family
 
CRON 3.
nrgA
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU36510: Ammonium transporter
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_033680: Ammonium transporter
 
Bacillus pumilus SAFR-032

Gene: BPUM_3300: Ammonium transporter
 
Bacillus licheniformis DSM 13

Gene: BLi03888: Ammonium transporter
 
Anoxybacillus flavithermus WK1

Gene: Aflv_1332: Ammonium transporter
 
Geobacillus kaustophilus HTA426

Gene: GK1452: Ammonium transporter
*
Bacillus cereus ATCC 14579

Site:
position = -57
score = 5.10364
sequence = ATGaTAtgAAacaTAACAa

Site:
position = -127
score = 5.62451
sequence = ATGTTAtAtTTTCTAACAT

Site:
position = -34
score = 5.44331
sequence = ATGTTAtttTTTCTAACAT

Gene: BC1156: Ammonium transporter
 
Bacillus halodurans C-125

Gene: BH3834: Ammonium transporter
 
Bacillus clausii KSM-K16

Gene: ABC3928: Ammonium transporter
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_2141: Ammonium transporter
Ammonium transporter
 
CRON 4.
utrA
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
*
Geobacillus kaustophilus HTA426

Site:
position = -202
score = 5.14291
sequence = ATGTAATAAAATGTGACAA

Site:
position = -225
score = 4.33829
sequence = GTGATAATAAATATAACAA

Gene: GK1937: Urea ABC transporter, urea binding protein
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -89
score = 4.75948
sequence = ATGTAACGATTTCTAACGA

Site:
position = -193
score = 4.99672
sequence = ATGTTATCTTTGATGACAA

Site:
position = -158
score = 4.57385
sequence = TTGTTAGAAAAGATTACAG

Gene: BH0251: Urea ABC transporter, urea binding protein
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_0557: Urea ABC transporter, urea binding protein
Urea ABC transporter, urea binding protein
urtB
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1936: Urea ABC transporter, permease protein UrtB
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH0250: Urea ABC transporter, permease protein UrtB
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_0558: Urea ABC transporter, permease protein UrtB
Urea ABC transporter, permease protein UrtB
urtC
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1935: Urea ABC transporter, permease protein UrtC
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH0249: Urea ABC transporter, permease protein UrtC
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_0559: Urea ABC transporter, permease protein UrtC
Urea ABC transporter, permease protein UrtC
urtD
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1934: Urea ABC transporter, ATPase protein UrtD
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH0248: Urea ABC transporter, ATPase protein UrtD
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_0560: Urea ABC transporter, ATPase protein UrtD
Urea ABC transporter, ATPase protein UrtD
urtE
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1933: Urea ABC transporter, ATPase protein UrtE
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH0247: Urea ABC transporter, ATPase protein UrtE
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_0561: Urea ABC transporter, ATPase protein UrtE
Urea ABC transporter, ATPase protein UrtE
ureA
*
Bacillus subtilis subsp. subtilis str. 168

Site:
position = -833
score = 5.05297
sequence = tTGTaAactTTTaTAACAT

Gene: BSU36660: Urease gamma subunit (EC 3.5.1.5)
*
Bacillus amyloliquefaciens FZB42

Site:
position = -204
score = 4.82967
sequence = ATGTAACCTTTCTTCACAT

Gene: RBAM_033830: Urease gamma subunit (EC 3.5.1.5)
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1932: Urease gamma subunit (EC 3.5.1.5)
 
Bacillus cereus ATCC 14579
*
Bacillus halodurans C-125

Site:
position = -62
score = 4.99672
sequence = TTGTCATCAAAGATAACAT

Site:
position = -97
score = 4.57385
sequence = CTGTAATCTTTTCTAACAA

Site:
position = -166
score = 4.75948
sequence = TCGTTAGAAATCGTTACAT

Gene: BH0252: Urease gamma subunit (EC 3.5.1.5)
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
*
Paenibacillus sp. JDR-2

Site:
position = -85
score = 5.43635
sequence = ATGTCATATTACCTAACAT

Gene: Pjdr2_4328: Urease gamma subunit (EC 3.5.1.5)
Urease gamma subunit (EC 3.5.1.5)
ureB
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU36650: Urease beta subunit (EC 3.5.1.5)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_033820: Urease beta subunit (EC 3.5.1.5)
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1931: Urease beta subunit (EC 3.5.1.5)
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH0253: Urease beta subunit (EC 3.5.1.5)
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_4327: Urease beta subunit (EC 3.5.1.5)
Urease beta subunit (EC 3.5.1.5)
ureC
 
Bacillus subtilis subsp. subtilis str. 168

Gene: BSU36640: Urease alpha subunit (EC 3.5.1.5)
 
Bacillus amyloliquefaciens FZB42

Gene: RBAM_033810: Urease alpha subunit (EC 3.5.1.5)
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1930: Urease alpha subunit (EC 3.5.1.5)
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH0254: Urease alpha subunit (EC 3.5.1.5)
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_4326: Urease alpha subunit (EC 3.5.1.5)
Urease alpha subunit (EC 3.5.1.5)
ureE
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1929: Urease accessory protein UreE
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH0255: Urease accessory protein UreE
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Urease accessory protein UreE
ureF
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1928: Urease accessory protein UreF
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH0256: Urease accessory protein UreF
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_4325: Urease accessory protein UreF
Urease accessory protein UreF
ureG
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1927: Urease accessory protein UreG
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH0257: Urease accessory protein UreG
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_4324: Urease accessory protein UreG
Urease accessory protein UreG
ureD
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1926: Urease accessory protein UreD
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125

Gene: BH0258: Urease accessory protein UreD
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2

Gene: Pjdr2_4323: Urease accessory protein UreD
Urease accessory protein UreD
ureH
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426

Gene: GK1925: Urease accessory protein
 
Bacillus cereus ATCC 14579
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Urease accessory protein
 
CRON 5.
gltP
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -218
score = 5.24627
sequence = ATGTGAGGTTTTCTGACAT

Gene: BC1432: Glutamate-aspartate carrier protein
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Glutamate-aspartate carrier protein
 
CRON 6.
alsT
 
Bacillus subtilis subsp. subtilis str. 168
 
Bacillus amyloliquefaciens FZB42
 
Bacillus pumilus SAFR-032
 
Bacillus licheniformis DSM 13
 
Anoxybacillus flavithermus WK1
 
Geobacillus kaustophilus HTA426
*
Bacillus cereus ATCC 14579

Site:
position = -89
score = 5.45136
sequence = ATGTTATAAAACCTGACAT

Site:
position = -112
score = 4.21377
sequence = ATGTTAAAAGAGTTAACGT

Gene: BC5051: Sodium/proton-dependent alanine carrier protein
 
Bacillus halodurans C-125
 
Bacillus clausii KSM-K16
 
Oceanobacillus iheyensis HTE831
 
Paenibacillus sp. JDR-2
Sodium/proton-dependent alanine carrier protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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