Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LexA - Cyanobacteria

Properties
Regulator type: Transcription factor
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Phylum: Cyanobacteria
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 26 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Synechococcus sp. PCC 7002 2 2
Synechocystis sp. PCC 6803
Cyanothece sp. ATCC 51142 3 3
Cyanothece sp. PCC 8801 2 2
Cyanothece sp. PCC 7425 4 4
Microcystis aeruginosa NIES-843 2 2
Nostoc sp. PCC 7120 6 5
Trichodesmium erythraeum IMS101
Synechococcus elongatus PCC 7942
Prochlorococcus marinus str. MIT 9313 4 4
Synechococcus sp. JA-3-3Ab 1 1
Synechococcus sp. WH 8102 3 2
Gloeobacter violaceus PCC 7421 1 1
Thermosynechococcus elongatus BP-1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ssb
*
Synechococcus sp. PCC 7002

Site:
position = -25
score = 3.86994
sequence = AGAACAGTTGTATG

Gene: SYNPCC7002_A0119: single-stranded DNA-binding protein
 
Synechocystis sp. PCC 6803

Gene: slr0925: single-stranded DNA-binding protein
 
Cyanothece sp. ATCC 51142

Gene: cce_2001: single-stranded DNA-binding protein
 
Cyanothece sp. PCC 8801

Gene: PCC8801_4131: single-stranded DNA-binding protein
*
Cyanothece sp. PCC 7425

Site:
position = -18
score = 4.10148
sequence = AGTACAGGTAAACT

Gene: Cyan7425_1469: single-stranded DNA-binding protein
*
Microcystis aeruginosa NIES-843

Site:
position = -33
score = 4.33524
sequence = CATACTATTGTACT

Gene: MAE_39060: single-stranded DNA-binding protein
*
Nostoc sp. PCC 7120

Site:
position = -28
score = 5.05542
sequence = AGTACTTATGTACT

Gene: alr0088: single-stranded DNA-binding protein
 
Trichodesmium erythraeum IMS101

Gene: Tery_1149: single-stranded DNA-binding protein
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_0301: single-stranded DNA-binding protein
 
Prochlorococcus marinus str. MIT 9313

Gene: PMT0141: single-stranded DNA-binding protein
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_2389: single-stranded DNA-binding protein
 
Synechococcus sp. WH 8102

Gene: SYNW0121: single-stranded DNA-binding protein
 2
Gloeobacter violaceus PCC 7421

Gene: glr2487: single-stranded DNA-binding protein

Gene: glr2942: single-stranded DNA-binding protein
 
Thermosynechococcus elongatus BP-1

Gene: 198211: single-stranded DNA-binding protein
single-stranded DNA-binding protein
 
CRON 2.
lexA
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A1849: SOS-response repressor and protease LexA (EC 3.4.21.88)
 
Synechocystis sp. PCC 6803

Gene: sll1626: SOS-response repressor and protease LexA (EC 3.4.21.88)
*2
Cyanothece sp. ATCC 51142

Gene: cce_5074: SOS-response repressor and protease LexA (EC 3.4.21.88)

Site:
position = -32
score = 4.74256
sequence = AGTACCCATGTTCT

Gene: cce_1899: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Cyanothece sp. PCC 8801

Site:
position = -75
score = 4.26038
sequence = AGTACTTATGTTCG

Gene: PCC8801_2186: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Cyanothece sp. PCC 7425

Site:
position = -131
score = 4.47536
sequence = GATACAAGTGTTCT

Gene: Cyan7425_1233: SOS-response repressor and protease LexA (EC 3.4.21.88)
 
Microcystis aeruginosa NIES-843

Gene: MAE_38110: SOS-response repressor and protease LexA (EC 3.4.21.88)
*
Nostoc sp. PCC 7120

Site:
position = -47
score = 4.78446
sequence = AGTACTAATGTTCT

Gene: alr4908: SOS-response repressor and protease LexA (EC 3.4.21.88)
 
Trichodesmium erythraeum IMS101
 
Synechococcus elongatus PCC 7942
*
Prochlorococcus marinus str. MIT 9313

Site:
position = -28
score = 4.63423
sequence = GGTACACATGTATT

Gene: PMT0380: SOS-response repressor and protease LexA (EC 3.4.21.88)
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. WH 8102

Gene: SYNW1582: SOS-response repressor and protease LexA (EC 3.4.21.88)
 
Gloeobacter violaceus PCC 7421
 
Thermosynechococcus elongatus BP-1
SOS-response repressor and protease LexA (EC 3.4.21.88)
 
CRON 3.
recA
*
Synechococcus sp. PCC 7002

Site:
position = -64
score = 4.32327
sequence = AGTACGATTGAACT

Gene: SYNPCC7002_A0426: Recombinase A
 
Synechocystis sp. PCC 6803

Gene: sll0569: Recombinase A
*
Cyanothece sp. ATCC 51142

Site:
position = -47
score = 4.75398
sequence = AATACTTTTGTACT

Gene: cce_4639: Recombinase A
 
Cyanothece sp. PCC 8801

Gene: PCC8801_0945: Recombinase A
*
Cyanothece sp. PCC 7425

Site:
position = -39
score = 4.51624
sequence = AGTACGGATATACT

Gene: Cyan7425_1671: Recombinase A
*
Microcystis aeruginosa NIES-843

Site:
position = -40
score = 4.63037
sequence = CATACTGCTGTACT

Gene: MAE_16070: Recombinase A
*
Nostoc sp. PCC 7120

Site:
position = -66
score = 4.64478
sequence = AGTATATCTGTTCT

Gene: all3272: Recombinase A
 
Trichodesmium erythraeum IMS101
 
Synechococcus elongatus PCC 7942
*
Prochlorococcus marinus str. MIT 9313

Site:
position = -145
score = 4.89804
sequence = GGTACGTCTGTACT

Gene: PMT1727: Recombinase A
 
Synechococcus sp. JA-3-3Ab
*
Synechococcus sp. WH 8102

Site:
position = -78
score = 4.73884
sequence = CGTACGCCTGTACT

Gene: SYNW2062: Recombinase A
 
Gloeobacter violaceus PCC 7421
 
Thermosynechococcus elongatus BP-1
Recombinase A
 
CRON 4.
SYNPCC7002_A0856
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A0856: Conserved hypothetical protein, no COGs
 
Synechocystis sp. PCC 6803
*
Cyanothece sp. ATCC 51142

Site:
position = -34
score = 3.80599
sequence = ACTACACTTATATT

Gene: cce_3128: Conserved hypothetical protein, no COGs
*
Cyanothece sp. PCC 8801

Site:
position = -47
score = 4.39557
sequence = ACTACACTTGTATT

Gene: PCC8801_1259: Conserved hypothetical protein, no COGs
*
Cyanothece sp. PCC 7425

Site:
position = -52
score = 4.39557
sequence = ACTACACTTGTATT

Gene: Cyan7425_4886: Conserved hypothetical protein, no COGs
 
Microcystis aeruginosa NIES-843

Gene: MAE_53810: Conserved hypothetical protein, no COGs
*
Nostoc sp. PCC 7120

Site:
position = -46
score = 4.39557
sequence = ACTACACTTGTATT

Gene: all0854: Conserved hypothetical protein, no COGs
 
Trichodesmium erythraeum IMS101

Gene: Tery_4878: Conserved hypothetical protein, no COGs
 
Synechococcus elongatus PCC 7942
 
Prochlorococcus marinus str. MIT 9313
*
Synechococcus sp. JA-3-3Ab

Site:
position = -39
score = 3.68525
sequence = GCTACAGGAGTAGT

Gene: CYA_0805: Conserved hypothetical protein, no COGs
 
Synechococcus sp. WH 8102
*
Gloeobacter violaceus PCC 7421

Site:
position = -45
score = 4.19727
sequence = ACTACGGCTATACT

Gene: gll1134: Conserved hypothetical protein, no COGs
 
Thermosynechococcus elongatus BP-1
Conserved hypothetical protein, no COGs
 
CRON 5.
umuD
 
Synechococcus sp. PCC 7002
 
Synechocystis sp. PCC 6803

Gene: sll5123: DNA polymerase V, subunit D
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 8801
 
Cyanothece sp. PCC 7425
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Trichodesmium erythraeum IMS101
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_1549: DNA polymerase V, subunit D
*
Prochlorococcus marinus str. MIT 9313

Site:
position = -20
score = 4.37319
sequence = GGAACGGGTGTACT

Gene: PMT0635: DNA polymerase V, subunit D
 
Synechococcus sp. JA-3-3Ab
*
Synechococcus sp. WH 8102

Site:
position = -39
score = 4.62588
sequence = AATACATCAGTACT

Gene: SYNW1044: DNA polymerase V, subunit D
 
Gloeobacter violaceus PCC 7421
 
Thermosynechococcus elongatus BP-1
DNA polymerase V, subunit D
umuC
 
Synechococcus sp. PCC 7002
 
Synechocystis sp. PCC 6803

Gene: sll5122: DNA polymerase V, subunit C
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 8801
 
Cyanothece sp. PCC 7425
 
Microcystis aeruginosa NIES-843
 
Nostoc sp. PCC 7120
 
Trichodesmium erythraeum IMS101
 
Synechococcus elongatus PCC 7942

Gene: Synpcc7942_1550: DNA polymerase V, subunit C
*
Prochlorococcus marinus str. MIT 9313

Site:
position = -52
score = 4.4543
sequence = AGTATCTTTGTACT

Gene: PMT0638: DNA polymerase V, subunit C
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. WH 8102

Gene: SYNW1043: DNA polymerase V, subunit C
 
Gloeobacter violaceus PCC 7421
 
Thermosynechococcus elongatus BP-1
DNA polymerase V, subunit C
 
CRON 6.
all4790
 
Synechococcus sp. PCC 7002
 
Synechocystis sp. PCC 6803
 
Cyanothece sp. ATCC 51142
 
Cyanothece sp. PCC 8801
 
Cyanothece sp. PCC 7425
 
Microcystis aeruginosa NIES-843
*
Nostoc sp. PCC 7120

Site:
position = -45
score = 4.02646
sequence = CGTACATTTGTACC

Gene: all4790: Conserved hypothetical protein
 
Trichodesmium erythraeum IMS101
 
Synechococcus elongatus PCC 7942
 
Prochlorococcus marinus str. MIT 9313

Gene: PMT0582: Conserved hypothetical protein
 
Synechococcus sp. JA-3-3Ab
 
Synechococcus sp. WH 8102

Gene: SYNW1092: Conserved hypothetical protein
 
Gloeobacter violaceus PCC 7421
 
Thermosynechococcus elongatus BP-1
Conserved hypothetical protein
recG
 
Synechococcus sp. PCC 7002

Gene: SYNPCC7002_A1856: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Synechocystis sp. PCC 6803

Gene: slr0020: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Cyanothece sp. ATCC 51142

Gene: cce_0327: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Cyanothece sp. PCC 8801

Gene: PCC8801_1498: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Cyanothece sp. PCC 7425

Gene: Cyan7425_4575: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Microcystis aeruginosa NIES-843

Gene: MAE_57930: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Nostoc sp. PCC 7120

Gene: all4789: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Trichodesmium erythraeum IMS101

Gene: Tery_1158: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Synechococcus elongatus PCC 7942
 
Prochlorococcus marinus str. MIT 9313

Gene: PMT0581: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Synechococcus sp. JA-3-3Ab

Gene: CYA_2013: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Synechococcus sp. WH 8102

Gene: SYNW1093: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Gloeobacter violaceus PCC 7421

Gene: gvip187: ATP-dependent DNA helicase RecG (EC 3.6.1.-)
 
Thermosynechococcus elongatus BP-1

Gene: tll0735 (deprecated): ATP-dependent DNA helicase RecG (EC 3.6.1.-)
ATP-dependent DNA helicase RecG (EC 3.6.1.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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