Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog FadP - Ralstonia

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode:
Biological process: Fatty acid degradation
Effector:
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 85 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Ralstonia solanacearum GMI1000 30 11
Ralstonia pickettii 12J 28 11
Ralstonia metallidurans CH34 32 14
Ralstonia eutropha JMP134 35 15
Ralstonia eutropha H16 36 15
Cupriavidus taiwanensis 36 15
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
fadP
*
Ralstonia solanacearum GMI1000

Site:
position = -136
score = 5.68703
sequence = TTGAACGATCGTTCGA

Gene: RS04423: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
*
Ralstonia pickettii 12J

Site:
position = -136
score = 5.60779
sequence = TTGAACGACCGTTCGA

Gene: Rpic_0347: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
*
Ralstonia metallidurans CH34

Site:
position = -142
score = 4.90009
sequence = CTGAACGACCGTTCTT

Gene: Rmet_0384: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
*
Ralstonia eutropha JMP134

Site:
position = -140
score = 4.90009
sequence = CTGAACGACCGTTCTT

Gene: Reut_A0445: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
*
Ralstonia eutropha H16

Site:
position = -143
score = 4.90009
sequence = CTGAACGACCGTTCTT

Gene: H16_A0459: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
*
Cupriavidus taiwanensis

Site:
position = -141
score = 4.90009
sequence = CTGAACGACCGTTCTT

Gene: RALTA_A0402: Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
Predicted transcriptional regulator for fatty acid degradation FadP, TetR family
acdH
 
Ralstonia solanacearum GMI1000

Gene: RS04422: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Ralstonia pickettii 12J

Gene: Rpic_0348: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Ralstonia metallidurans CH34

Gene: Rmet_0385: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Ralstonia eutropha JMP134

Gene: Reut_A0446: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Ralstonia eutropha H16

Gene: H16_A0460: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Cupriavidus taiwanensis

Gene: RALTA_A0403: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Acyl-CoA dehydrogenase (EC 1.3.99.3)
acdB
 
Ralstonia solanacearum GMI1000

Gene: RS04421: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
 
Ralstonia pickettii 12J

Gene: Rpic_0349: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
 
Ralstonia metallidurans CH34

Gene: Rmet_0386: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
 
Ralstonia eutropha JMP134

Gene: Reut_A0447: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
 
Ralstonia eutropha H16

Gene: H16_A0461: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
 
Cupriavidus taiwanensis

Gene: RALTA_A0404: Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
Enoyl-CoA hydratase (EC 4.2.1.17) / 3,2-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
acdA
 
Ralstonia solanacearum GMI1000

Gene: RS04420: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Ralstonia pickettii 12J

Gene: Rpic_0350: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Ralstonia metallidurans CH34

Gene: Rmet_0387: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Ralstonia eutropha JMP134

Gene: Reut_A0448: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Ralstonia eutropha H16

Gene: H16_A0462: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
 
Cupriavidus taiwanensis

Gene: RALTA_A0405: 3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
3-ketoacyl-CoA thiolase (EC 2.3.1.16) @ Acetyl-CoA acetyltransferase (EC 2.3.1.9)
degV
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34

Gene: Rmet_0388: conserved hypothetical protein, DegV family
 
Ralstonia eutropha JMP134

Gene: Reut_A0449: conserved hypothetical protein, DegV family
 
Ralstonia eutropha H16

Gene: H16_A0463: conserved hypothetical protein, DegV family
 
Cupriavidus taiwanensis

Gene: RALTA_A0406: conserved hypothetical protein, DegV family
conserved hypothetical protein, DegV family
echH
 
Ralstonia solanacearum GMI1000

Gene: RS04419: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34

Gene: Rmet_0389: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Ralstonia eutropha JMP134

Gene: Reut_A0450: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Ralstonia eutropha H16

Gene: H16_A0464: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Cupriavidus taiwanensis

Gene: RALTA_A0407: Enoyl-CoA hydratase (EC 4.2.1.17)
Enoyl-CoA hydratase (EC 4.2.1.17)
 
CRON 2.
etfB
*
Ralstonia solanacearum GMI1000

Site:
position = -95
score = 5.20422
sequence = TAGCACGACCGTTCGT

Gene: RSc0923: Electron transfer flavoprotein, beta subunit
*
Ralstonia pickettii 12J

Site:
position = -96
score = 5.11798
sequence = TAGCACGACCGTTCGG

Gene: Rpic_0793: Electron transfer flavoprotein, beta subunit
*
Ralstonia metallidurans CH34

Site:
position = -48
score = 5.47857
sequence = TAGTACGATCGTTCGA

Gene: Rmet_0737: Electron transfer flavoprotein, beta subunit
*
Ralstonia eutropha JMP134

Site:
position = -97
score = 5.47857
sequence = TAGTACGATCGTTCGA

Gene: Reut_A2550: Electron transfer flavoprotein, beta subunit
*
Ralstonia eutropha H16

Site:
position = -98
score = 5.47857
sequence = TAGTACGATCGTTCGA

Gene: H16_A0814: Electron transfer flavoprotein, beta subunit
*
Cupriavidus taiwanensis

Site:
position = -98
score = 5.47857
sequence = TAGTACGATCGTTCGA

Gene: RALTA_A0795: Electron transfer flavoprotein, beta subunit
Electron transfer flavoprotein, beta subunit
etfA
 
Ralstonia solanacearum GMI1000

Gene: RSc0924: Electron transfer flavoprotein alpha subunit
 
Ralstonia pickettii 12J

Gene: Rpic_0794: Electron transfer flavoprotein alpha subunit
 
Ralstonia metallidurans CH34

Gene: Rmet_0738: Electron transfer flavoprotein alpha subunit
 
Ralstonia eutropha JMP134

Gene: Reut_A2549: Electron transfer flavoprotein alpha subunit
 
Ralstonia eutropha H16

Gene: H16_A0815: Electron transfer flavoprotein alpha subunit
 
Cupriavidus taiwanensis

Gene: RALTA_A0796: Electron transfer flavoprotein alpha subunit
Electron transfer flavoprotein alpha subunit
acdH2
 
Ralstonia solanacearum GMI1000

Gene: RS04489: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Ralstonia pickettii 12J

Gene: Rpic_0795: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Ralstonia metallidurans CH34

Gene: Rmet_0739: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Ralstonia eutropha JMP134

Gene: Reut_A2548: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Ralstonia eutropha H16

Gene: H16_A0816: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Cupriavidus taiwanensis

Gene: RALTA_A0797: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
CRON 3.
etfD
*
Ralstonia solanacearum GMI1000

Site:
position = -120
score = 5.60779
sequence = TCGAACGACCGTTCAA

Gene: RSc1567: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Ralstonia pickettii 12J

Site:
position = -121
score = 5.23688
sequence = TCGAACGATCGTTCAG

Gene: Rpic_1986: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Ralstonia metallidurans CH34

Site:
position = -243
score = 5.35024
sequence = AAGAACGGTCGTTCAA

Gene: Rmet_1146: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Ralstonia eutropha JMP134

Site:
position = -211
score = 5.10722
sequence = AAGAACGACCGTTCCA

Gene: Reut_A1262: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Ralstonia eutropha H16

Site:
position = -248
score = 5.10722
sequence = AAGAACGACCGTTCCA

Gene: H16_A1324: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
*
Cupriavidus taiwanensis

Site:
position = -288
score = 5.10722
sequence = AAGAACGACCGTTCCA

Gene: RALTA_A1245: Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
Electron transfer flavoprotein-ubiquinone oxidoreductase (EC 1.5.5.1)
 
CRON 4.
fadD2
*
Ralstonia solanacearum GMI1000

Site:
position = -58
score = 5.34325
sequence = TAGAACGATCGTTCAG

Gene: RSc0780: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Ralstonia pickettii 12J

Site:
position = -60
score = 5.36645
sequence = TAGAACGATCGTTCGG

Gene: Rpic_0727: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Ralstonia metallidurans CH34

Site:
position = -106
score = 5.264
sequence = TAGAACGGTCGTTCAG

Gene: Rmet_2635: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Ralstonia eutropha JMP134

Site:
position = -73
score = 5.36645
sequence = TAGAACGATCGTTCGG

Gene: Reut_A0823: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Ralstonia eutropha H16

Site:
position = -74
score = 5.36645
sequence = TAGAACGATCGTTCGG

Gene: H16_A2794: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Cupriavidus taiwanensis

Site:
position = -73
score = 5.36645
sequence = TAGAACGATCGTTCGG

Gene: RALTA_A2284: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
CRON 5.
RSc1772
*
Ralstonia solanacearum GMI1000

Site:
position = 41
score = 4.97934
sequence = AAGAACGATCGTTCAG

Gene: RS02959: Alpha/beta hydrolase fold-3 domain protein
*
Ralstonia pickettii 12J

Site:
position = -27
score = 5.34325
sequence = TAGAACGATCGTTCAG

Gene: Rpic_1434: Alpha/beta hydrolase fold-3 domain protein
*
Ralstonia metallidurans CH34

Site:
position = 36
score = 5.15764
sequence = TCGAACGACCGTTCAG

Gene: Rmet_1843: Alpha/beta hydrolase fold-3 domain protein
*
Ralstonia eutropha JMP134

Site:
position = 12
score = 5.24388
sequence = TCGAACGACCGTTCAC

Gene: Reut_A1419: Alpha/beta hydrolase fold-3 domain protein
*
Ralstonia eutropha H16

Site:
position = -97
score = 5.32312
sequence = TCGAACGATCGTTCAC

Gene: H16_A1554: Alpha/beta hydrolase fold-3 domain protein
*
Cupriavidus taiwanensis

Site:
position = -97
score = 5.32312
sequence = TCGAACGATCGTTCAC

Gene: RALTA_A1480: Alpha/beta hydrolase fold-3 domain protein
Alpha/beta hydrolase fold-3 domain protein
h16_A1555
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34

Gene: Rmet_1842: conserved hypothetical protein, UPF0065
 
Ralstonia eutropha JMP134

Gene: Reut_A1420: conserved hypothetical protein, UPF0065
 
Ralstonia eutropha H16

Gene: H16_A1555: conserved hypothetical protein, UPF0065
 
Cupriavidus taiwanensis

Gene: RALTA_A1481: conserved hypothetical protein, UPF0065
conserved hypothetical protein, UPF0065
Rsc1773
 
Ralstonia solanacearum GMI1000

Gene: RS02960: putative 4-hydroxybenzoyl-CoA thioesterase
 
Ralstonia pickettii 12J

Gene: Rpic_1433: putative 4-hydroxybenzoyl-CoA thioesterase
 
Ralstonia metallidurans CH34

Gene: Rmet_1841: putative 4-hydroxybenzoyl-CoA thioesterase
 
Ralstonia eutropha JMP134

Gene: Reut_A1421: putative 4-hydroxybenzoyl-CoA thioesterase
 
Ralstonia eutropha H16

Gene: H16_A1556: putative 4-hydroxybenzoyl-CoA thioesterase
 
Cupriavidus taiwanensis

Gene: RALTA_A1482: putative 4-hydroxybenzoyl-CoA thioesterase
putative 4-hydroxybenzoyl-CoA thioesterase
Rsc1774
 
Ralstonia solanacearum GMI1000

Gene: RS02961: GCN5-related N-acetyltransferase
 
Ralstonia pickettii 12J

Gene: Rpic_1432: GCN5-related N-acetyltransferase
 
Ralstonia metallidurans CH34

Gene: Rmet_1833: GCN5-related N-acetyltransferase
 
Ralstonia eutropha JMP134

Gene: Reut_A1429: GCN5-related N-acetyltransferase
 
Ralstonia eutropha H16

Gene: H16_A1564: GCN5-related N-acetyltransferase
 
Cupriavidus taiwanensis

Gene: RALTA_A1490: GCN5-related N-acetyltransferase
GCN5-related N-acetyltransferase
 
CRON 6.
fadB
*
Ralstonia solanacearum GMI1000

Site:
position = -101
score = 5.54493
sequence = TTGAACGACCGTGCTA

Gene: RS02946: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
*
Ralstonia pickettii 12J

Site:
position = -141
score = 5.54493
sequence = TTGAACGACCGTGCTA

Gene: Rpic_1447: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
*
Ralstonia metallidurans CH34

Site:
position = -165
score = 5.54493
sequence = TTGAACGACCGTGCTA

Gene: Rmet_1855: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
*
Ralstonia eutropha JMP134

Site:
position = -203
score = 5.54493
sequence = TTGAACGACCGTGCTA

Gene: Reut_A1405: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
*
Ralstonia eutropha H16

Site:
position = -214
score = 5.54493
sequence = TTGAACGACCGTGCTA

Gene: H16_A1526: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
*
Cupriavidus taiwanensis

Site:
position = -218
score = 5.54493
sequence = TTGAACGACCGTGCTA

Gene: RALTA_A1467: Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
Enoyl-CoA hydratase (EC 4.2.1.17) / Delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase (EC 5.3.3.8) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3)
pncA
 
Ralstonia solanacearum GMI1000

Gene: RSc1760: Nicotinamidase (EC 3.5.1.19)
 
Ralstonia pickettii 12J

Gene: Rpic_1446: Nicotinamidase (EC 3.5.1.19)
 
Ralstonia metallidurans CH34

Gene: Rmet_1854: Nicotinamidase (EC 3.5.1.19)
 
Ralstonia eutropha JMP134

Gene: Reut_A1406: Nicotinamidase (EC 3.5.1.19)
 
Ralstonia eutropha H16

Gene: H16_A1527: Nicotinamidase (EC 3.5.1.19)
 
Cupriavidus taiwanensis

Gene: RALTA_A1468: Nicotinamidase (EC 3.5.1.19)
Nicotinamidase (EC 3.5.1.19)
fadA
 
Ralstonia solanacearum GMI1000

Gene: RS02948: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Ralstonia pickettii 12J

Gene: Rpic_1445: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Ralstonia metallidurans CH34

Gene: Rmet_1853: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Ralstonia eutropha JMP134

Gene: Reut_A1407: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Ralstonia eutropha H16

Gene: H16_A1528: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
 
Cupriavidus taiwanensis

Gene: RALTA_A1469: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
paaI
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134
 
Ralstonia eutropha H16

Gene: H16_A1529: phenylacetic acid degradation protein PaaI
 
Cupriavidus taiwanensis

Gene: RALTA_A1470: phenylacetic acid degradation protein PaaI
phenylacetic acid degradation protein PaaI
acdH3
 
Ralstonia solanacearum GMI1000

Gene: RS02949: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Ralstonia pickettii 12J

Gene: Rpic_1444: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Ralstonia metallidurans CH34

Gene: Rmet_1852: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Ralstonia eutropha JMP134

Gene: Reut_A1408: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Ralstonia eutropha H16

Gene: H16_A1530: Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
Cupriavidus taiwanensis

Gene: RALTA_A1471: Acyl-CoA dehydrogenase (EC 1.3.99.3)
Acyl-CoA dehydrogenase (EC 1.3.99.3)
 
CRON 7.
acsA
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
*
Ralstonia metallidurans CH34

Site:
position = -16
score = 5.37344
sequence = TAGAACGGTCGTTCGC

Gene: Rmet_1061: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
*
Ralstonia eutropha JMP134

Site:
position = -49
score = 5.37344
sequence = TAGAACGACCGTTCGC

Gene: Reut_A1097: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
*
Ralstonia eutropha H16

Site:
position = -91
score = 5.45268
sequence = TAGAACGATCGTTCGC

Gene: H16_A1197: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
*
Cupriavidus taiwanensis

Site:
position = -95
score = 5.45268
sequence = TAGAACGATCGTTCGC

Gene: RALTA_A1174: Acetyl-coenzyme A synthetase (EC 6.2.1.1)
Acetyl-coenzyme A synthetase (EC 6.2.1.1)
 
CRON 8.
nppD
 
Ralstonia solanacearum GMI1000

Gene: RS00690: 2-nitropropane dioxygenase NPD
 
Ralstonia pickettii 12J

Gene: Rpic_0096: 2-nitropropane dioxygenase NPD
*
Ralstonia metallidurans CH34

Site:
position = -39
score = 5.44401
sequence = TCGAACGATCGTTCCA

Gene: Rmet_0222: 2-nitropropane dioxygenase NPD
*
Ralstonia eutropha JMP134

Site:
position = -58
score = 5.24388
sequence = TCGAACGACCGTTCAT

Gene: Reut_A0268: 2-nitropropane dioxygenase NPD
*
Ralstonia eutropha H16

Site:
position = -59
score = 5.24388
sequence = TCGAACGACCGTTCAT

Gene: H16_A0293: 2-nitropropane dioxygenase NPD
*
Cupriavidus taiwanensis

Site:
position = -58
score = 5.24388
sequence = TCGAACGACCGTTCAC

Gene: RALTA_A0233: 2-nitropropane dioxygenase NPD
2-nitropropane dioxygenase NPD
 
CRON 9.
liuR
 
Ralstonia solanacearum GMI1000

Gene: RS03247: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
 
Ralstonia pickettii 12J

Gene: Rpic_0130: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Ralstonia metallidurans CH34

Site:
position = -32
score = 4.95921
sequence = ACGAACGATCGTTCAC

Gene: Rmet_0102: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Ralstonia eutropha JMP134

Site:
position = -32
score = 4.87997
sequence = ACGAACGACCGTTCAC

Gene: Reut_A0133: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Ralstonia eutropha H16

Site:
position = -32
score = 4.87997
sequence = ACGAACGACCGTTCAC

Gene: H16_A0165: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
*
Cupriavidus taiwanensis

Site:
position = -32
score = 4.87997
sequence = ACGAACGACCGTTCAC

Gene: RALTA_A0108: Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
Predicted transcriptional regulator LiuR of leucine degradation pathway, MerR family
 
CRON 10.
Rmet_0145
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
*
Ralstonia eutropha JMP134

Site:
position = -10
score = 5.56813
sequence = TCGAACGACCGTGCTA

Gene: Reut_A0190: TesB-like acyl-CoA thioesterase 2
*
Ralstonia eutropha H16

Site:
position = -46
score = 5.64737
sequence = TCGAACGATCGTGCTA

Gene: H16_A0217: TesB-like acyl-CoA thioesterase 2
*
Cupriavidus taiwanensis

Site:
position = -43
score = 5.45268
sequence = GCGAACGATCGTTCTA

Gene: RALTA_A0160: TesB-like acyl-CoA thioesterase 2
TesB-like acyl-CoA thioesterase 2
 
CRON 11.
paaH1
*
Ralstonia solanacearum GMI1000

Site:
position = -49
score = 4.86982
sequence = TCGCACGCTCGTGCTA

Gene: RSc2013: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
*
Ralstonia pickettii 12J

Site:
position = -53
score = 4.86982
sequence = TCGCACGCTCGTGCTA

Gene: Rpic_2168: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
*
Ralstonia metallidurans CH34

Site:
position = -44
score = 4.94544
sequence = ACGTACGATCGTGCTA

Gene: Rmet_0974: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
*
Ralstonia eutropha JMP134

Site:
position = -43
score = 4.94544
sequence = ACGTACGATCGTGCTA

Gene: Reut_A1010: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
*
Ralstonia eutropha H16

Site:
position = -43
score = 4.94544
sequence = ACGTACGATCGTGCTA

Gene: H16_A1102: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
*
Cupriavidus taiwanensis

Site:
position = -31
score = 4.94544
sequence = ACGTACGATCGTGCTA

Gene: RALTA_A1087: 3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
3-hydroxybutyryl-CoA dehydrogenase, phenylacetic acid degradation
paaG4
 
Ralstonia solanacearum GMI1000

Gene: RSc2014: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Ralstonia pickettii 12J

Gene: Rpic_2169: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Ralstonia metallidurans CH34

Gene: Rmet_0973: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Ralstonia eutropha JMP134

Gene: Reut_A1009: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Ralstonia eutropha H16

Gene: H16_A1101: Enoyl-CoA hydratase (EC 4.2.1.17)
 
Cupriavidus taiwanensis

Gene: RALTA_A1086: Enoyl-CoA hydratase (EC 4.2.1.17)
Enoyl-CoA hydratase (EC 4.2.1.17)
BPSL1236
 
Ralstonia solanacearum GMI1000

Gene: RS03583: Putative phosphoglycerate mutase
 
Ralstonia pickettii 12J

Gene: Rpic_2170: Putative phosphoglycerate mutase
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134

Gene: Reut_A1008: Putative phosphoglycerate mutase
 
Ralstonia eutropha H16

Gene: H16_A1100: Putative phosphoglycerate mutase
 
Cupriavidus taiwanensis

Gene: RALTA_A1085: Putative phosphoglycerate mutase
Putative phosphoglycerate mutase
BPSL1235
 
Ralstonia solanacearum GMI1000

Gene: RS03584: Phosphotransferase enzyme family protein
 
Ralstonia pickettii 12J

Gene: Rpic_2171: Phosphotransferase enzyme family protein
 
Ralstonia metallidurans CH34

Gene: Rmet_0972: Phosphotransferase enzyme family protein
 
Ralstonia eutropha JMP134

Gene: Reut_A1007: Phosphotransferase enzyme family protein
 
Ralstonia eutropha H16

Gene: H16_A1099: Phosphotransferase enzyme family protein
 
Cupriavidus taiwanensis

Gene: RALTA_A1084: Phosphotransferase enzyme family protein
Phosphotransferase enzyme family protein
 
CRON 12.
fadD1
*
Ralstonia solanacearum GMI1000

Site:
position = -47
score = 5.21044
sequence = TCGAACGACCATTCGA

Gene: RSc2857: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Ralstonia pickettii 12J

Site:
position = -46
score = 4.84653
sequence = ACGAACGACCATTCGA

Gene: Rpic_3104: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Ralstonia metallidurans CH34

Site:
position = -32
score = 4.73709
sequence = TCGAACGACCATTCAG

Gene: Rmet_3148: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Ralstonia eutropha JMP134

Site:
position = -34
score = 4.73709
sequence = TCGAACGACCATTCAG

Gene: Reut_A2994: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Ralstonia eutropha H16

Site:
position = -34
score = 4.73709
sequence = TCGAACGACCATTCAG

Gene: H16_A3288: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
*
Cupriavidus taiwanensis

Site:
position = -35
score = 4.73709
sequence = TCGAACGACCATTCAG

Gene: RALTA_A2744: Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3)
 
CRON 13.
RSc2046
*
Ralstonia solanacearum GMI1000

Site:
position = -63
score = 5.54493
sequence = TAGCACGACCGTTCAA

Gene: RS03611: conserved hypothetical protein, DUF1178
*
Ralstonia pickettii 12J

Site:
position = -85
score = 5.09785
sequence = GCGAACGGTCGTGCGA

Site:
position = -63
score = 5.18102
sequence = TAGCACGACCGTTCAC

Gene: Rpic_2198: conserved hypothetical protein, DUF1178
*
Ralstonia metallidurans CH34

Site:
position = -62
score = 5.18102
sequence = TAGCACGACCGTTCAC

Gene: Rmet_0943: conserved hypothetical protein, DUF1178
*
Ralstonia eutropha JMP134

Site:
position = -64
score = 5.18102
sequence = TAGCACGACCGTTCAC

Gene: Reut_A0977: conserved hypothetical protein, DUF1178
*
Ralstonia eutropha H16

Site:
position = -87
score = 5.2872
sequence = CCGAACGGTCGTTCTA

Site:
position = -64
score = 5.18102
sequence = TAGCACGACCGTTCAC

Gene: H16_A1066: conserved hypothetical protein, DUF1178
*
Cupriavidus taiwanensis

Site:
position = -87
score = 5.37344
sequence = ACGAACGGTCGTTCTA

Site:
position = -64
score = 5.18102
sequence = TAGCACGACCGTTCAC

Gene: RALTA_A1050: conserved hypothetical protein, DUF1178
conserved hypothetical protein, DUF1178
acdQ
 
Ralstonia solanacearum GMI1000

Gene: RS03610: Acyl-CoA dehydrogenase (EC 1.3.99.-)
 
Ralstonia pickettii 12J

Gene: Rpic_2197: Acyl-CoA dehydrogenase (EC 1.3.99.-)
 
Ralstonia metallidurans CH34

Gene: Rmet_0944: Acyl-CoA dehydrogenase (EC 1.3.99.-)
 
Ralstonia eutropha JMP134

Gene: Reut_A0978: Acyl-CoA dehydrogenase (EC 1.3.99.-)
 
Ralstonia eutropha H16

Gene: H16_A1067: Acyl-CoA dehydrogenase (EC 1.3.99.-)
 
Cupriavidus taiwanensis

Gene: RALTA_A1051: Acyl-CoA dehydrogenase (EC 1.3.99.-)
Acyl-CoA dehydrogenase (EC 1.3.99.-)
acdP
 
Ralstonia solanacearum GMI1000

Gene: RS03609: acyl-CoA dehydrogenase domain protein
 
Ralstonia pickettii 12J

Gene: Rpic_2196: acyl-CoA dehydrogenase domain protein
 
Ralstonia metallidurans CH34

Gene: Rmet_0945: acyl-CoA dehydrogenase domain protein
 
Ralstonia eutropha JMP134

Gene: Reut_A0979: acyl-CoA dehydrogenase domain protein
 
Ralstonia eutropha H16

Gene: H16_A1068: acyl-CoA dehydrogenase domain protein
 
Cupriavidus taiwanensis

Gene: RALTA_A1052: acyl-CoA dehydrogenase domain protein
acyl-CoA dehydrogenase domain protein
maoC
 
Ralstonia solanacearum GMI1000

Gene: RS03608: Putative (R)-specific enoyl-CoA hydratase, MaoC- like
 
Ralstonia pickettii 12J

Gene: Rpic_2195: Putative (R)-specific enoyl-CoA hydratase, MaoC- like
 
Ralstonia metallidurans CH34

Gene: Rmet_0946: Putative (R)-specific enoyl-CoA hydratase, MaoC- like
 
Ralstonia eutropha JMP134

Gene: Reut_A0980: Putative (R)-specific enoyl-CoA hydratase, MaoC- like
 
Ralstonia eutropha H16

Gene: H16_A1069: Putative (R)-specific enoyl-CoA hydratase, MaoC- like
 
Cupriavidus taiwanensis

Gene: RALTA_A1053: Putative (R)-specific enoyl-CoA hydratase, MaoC- like
Putative (R)-specific enoyl-CoA hydratase, MaoC- like
echI
 
Ralstonia solanacearum GMI1000

Gene: RS03607: MaoC domain protein dehydratase
 
Ralstonia pickettii 12J

Gene: Rpic_2194: MaoC domain protein dehydratase
 
Ralstonia metallidurans CH34

Gene: Rmet_0947: MaoC domain protein dehydratase
 
Ralstonia eutropha JMP134

Gene: Reut_A0981: MaoC domain protein dehydratase
 
Ralstonia eutropha H16

Gene: H16_A1070: MaoC domain protein dehydratase
 
Cupriavidus taiwanensis

Gene: RALTA_A1054: MaoC domain protein dehydratase
MaoC domain protein dehydratase
 
CRON 14.
bktB
*
Ralstonia solanacearum GMI1000

Site:
position = -59
score = 4.79731
sequence = TCGAACGATCGTTTGC

Gene: RSc1637: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
*
Ralstonia pickettii 12J

Site:
position = -59
score = 4.73394
sequence = GCGAACGGTCGTGCGT

Gene: Rpic_1910: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
*
Ralstonia metallidurans CH34

Site:
position = -72
score = 4.6715
sequence = AAGTACGGTCGTTCGT

Gene: Rmet_1362: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
*
Ralstonia eutropha JMP134

Site:
position = -71
score = 5.11466
sequence = AAGTACGATCGTTCGA

Gene: Reut_A1353: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
*
Ralstonia eutropha H16

Site:
position = -73
score = 4.50632
sequence = AAGTACGCTCGTTCGA

Gene: H16_A1445: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
*
Cupriavidus taiwanensis

Site:
position = -72
score = 4.6483
sequence = AAGTACGACCGTTCAC

Gene: RALTA_A1359: 3-ketoacyl-CoA thiolase (EC 2.3.1.16)
3-ketoacyl-CoA thiolase (EC 2.3.1.16)
RSc1638
 
Ralstonia solanacearum GMI1000

Gene: RS04012: hypothetical protein
 
Ralstonia pickettii 12J

Gene: Rpic_1909: hypothetical protein
 
Ralstonia metallidurans CH34

Gene: Rmet_1363: hypothetical protein
 
Ralstonia eutropha JMP134

Gene: Reut_A1354: hypothetical protein
 
Ralstonia eutropha H16

Gene: H16_A1446: hypothetical protein
 
Cupriavidus taiwanensis

Gene: RALTA_A1360: hypothetical protein
hypothetical protein
 
CRON 15.
alkK
*
Ralstonia solanacearum GMI1000

Site:
position = -42
score = 4.58194
sequence = TAGAACGGTTGTTCAG

Gene: RSc1749: Medium-chain-fatty-acid-CoA ligase
*
Ralstonia pickettii 12J

Site:
position = -34
score = 4.58194
sequence = TAGAACGGTTGTTCAG

Gene: Rpic_1455: Medium-chain-fatty-acid-CoA ligase
*
Ralstonia metallidurans CH34

Site:
position = -73
score = 4.6014
sequence = TAGCACGATTGTTCGT

Gene: Rmet_1863: Medium-chain-fatty-acid-CoA ligase
*
Ralstonia eutropha JMP134

Site:
position = -54
score = 4.69137
sequence = TAGAACGGTTGTTCGT

Gene: Reut_A1398: Medium-chain-fatty-acid-CoA ligase
*
Ralstonia eutropha H16

Site:
position = -55
score = 4.35334
sequence = TAGTACGGTTGTTCGT

Gene: H16_A1519: Medium-chain-fatty-acid-CoA ligase
*
Cupriavidus taiwanensis

Site:
position = -73
score = 4.61862
sequence = GCGAACGACCGTCCAA

Site:
position = -54
score = 4.35334
sequence = TAGTACGGTTGTTCGT

Gene: RALTA_A1460: Medium-chain-fatty-acid-CoA ligase
Medium-chain-fatty-acid-CoA ligase
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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