Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog LiuQ - Ralstonia

Properties
Regulator type: Transcription factor
Regulator family: TetR
Regulation mode: repressor
Biological process: Branched-chain amino acid degradation
Effector:
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 14 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Ralstonia solanacearum GMI1000
Ralstonia pickettii 12J
Ralstonia metallidurans CH34 4 2
Ralstonia eutropha JMP134 7 2
Ralstonia eutropha H16 5 2
Cupriavidus taiwanensis 3 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
aacS
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
*
Ralstonia metallidurans CH34

Site:
position = -48
score = 5.58543
sequence = TTGAGTATTACTCAA

Site:
position = -149
score = 5.11817
sequence = TTGAATGTTACTCAA

Gene: Rmet_0610: AMP-dependent synthetase and ligase
*
Ralstonia eutropha JMP134

Site:
position = -167
score = 4.99667
sequence = TTGACCAACACTCAA

Site:
position = -59
score = 5.27274
sequence = TTGAGCTACGCTCAA

Gene: Reut_A1467: AMP-dependent synthetase and ligase
*
Ralstonia eutropha H16

Site:
position = -59
score = 5.022
sequence = TTGAGTAACACTCAC

Site:
position = -234
score = 5.34882
sequence = TTGAGCTTTACTCAA

Gene: H16_A1971: AMP-dependent synthetase and ligase
*
Cupriavidus taiwanensis

Site:
position = -215
score = 4.6206
sequence = TTGAGTCAACCTCAA

Site:
position = -50
score = 4.79966
sequence = TTGAGTTGTGCTCAA

Gene: RALTA_A1548: AMP-dependent synthetase and ligase
AMP-dependent synthetase and ligase
liuA
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134

Gene: Reut_A1466: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
 
Ralstonia eutropha H16

Gene: H16_A1972: Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
 
Cupriavidus taiwanensis
Isovaleryl-CoA dehydrogenase (EC 1.3.99.10)
liuB
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34

Gene: Rmet_0609: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Ralstonia eutropha JMP134

Gene: Reut_A1465: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Ralstonia eutropha H16

Gene: H16_A1973: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
 
Cupriavidus taiwanensis

Gene: RALTA_A1549: Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4)
liuC
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134

Gene: Reut_A1464: Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
Methylglutaconyl-CoA hydratase (EC 4.2.1.18)
liuD
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34

Gene: Rmet_0608: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Ralstonia eutropha JMP134

Gene: Reut_A1463: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Ralstonia eutropha H16

Gene: H16_A1974: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
 
Cupriavidus taiwanensis

Gene: RALTA_A1550: Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4)
liuE
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134

Gene: Reut_A1462: Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
Hydroxymethylglutaryl-CoA lyase (EC 4.1.3.4)
 
CRON 2.
liuQ
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
*
Ralstonia metallidurans CH34

Site:
position = -111
score = 5.11817
sequence = TTGAGTAACATTCAA

Site:
position = -212
score = 5.58543
sequence = TTGAGTAATACTCAA

Gene: Rmet_0611: Predicted branched-chain amino acid degradation regulator LiuQ, TetR family
*
Ralstonia eutropha JMP134

Site:
position = -154
score = 5.27274
sequence = TTGAGCGTAGCTCAA

Site:
position = -46
score = 4.99667
sequence = TTGAGTGTTGGTCAA

Gene: Reut_A1468: Predicted branched-chain amino acid degradation regulator LiuQ, TetR family
*
Ralstonia eutropha H16

Site:
position = -72
score = 5.34882
sequence = TTGAGTAAAGCTCAA

Site:
position = -247
score = 5.022
sequence = GTGAGTGTTACTCAA

Gene: H16_A1970: Predicted branched-chain amino acid degradation regulator LiuQ, TetR family
 
Cupriavidus taiwanensis

Gene: RALTA_A1547: Predicted branched-chain amino acid degradation regulator LiuQ, TetR family
Predicted branched-chain amino acid degradation regulator LiuQ, TetR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD