Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Dnr - Ralstonia

Properties
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Denitrification
Effector: Nitric oxide
Phylum: Proteobacteria/beta
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 9 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Ralstonia solanacearum GMI1000 7 2
Ralstonia pickettii 12J 6 1
Ralstonia metallidurans CH34 11 2
Ralstonia eutropha JMP134 10 1
Ralstonia eutropha H16 15 2
Cupriavidus taiwanensis 9 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
nirK
*
Ralstonia solanacearum GMI1000

Site:
position = -42
score = 4.441
sequence = GTTTGCGCTGTGTCAAAG

Gene: RS03038: Copper-containing nitrite reductase (NirK)
 
Ralstonia pickettii 12J

Gene: Rpic_4015: Copper-containing nitrite reductase (NirK)
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
Copper-containing nitrite reductase (NirK)
 
CRON 2.
nirS
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
*
Ralstonia metallidurans CH34

Site:
position = -118
score = 5.58802
sequence = CGTTGACTCGTGTCAATC

Gene: Rmet_3172: Nitrite reductase NirS (Cytochrome cd1)
*
Ralstonia eutropha JMP134

Site:
position = -91
score = 5.17073
sequence = CGTTGACAACAGTCAACC

Gene: Reut_B5010: Nitrite reductase NirS (Cytochrome cd1)
*
Ralstonia eutropha H16

Site:
position = -123
score = 4.61314
sequence = GTTTGATGCCAGTCAATT

Gene: H16_B2277: Nitrite reductase NirS (Cytochrome cd1)
*
Cupriavidus taiwanensis

Site:
position = -123
score = 4.53297
sequence = GTTTGATGACAGTCAATC

Gene: RALTA_B2049: Nitrite reductase NirS (Cytochrome cd1)
Nitrite reductase NirS (Cytochrome cd1)
Reut_B5011
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34

Gene: Rmet_3171: cytochrome c, class I
 
Ralstonia eutropha JMP134

Gene: Reut_B5011: cytochrome c, class I
 
Ralstonia eutropha H16
 
Cupriavidus taiwanensis
cytochrome c, class I
nirC
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134

Gene: Reut_B5012: cytochrome c, nitrite reductase associated (NirC)
 
Ralstonia eutropha H16

Gene: H16_B2278: cytochrome c, nitrite reductase associated (NirC)
 
Cupriavidus taiwanensis

Gene: RALTA_B2050: cytochrome c, nitrite reductase associated (NirC)
cytochrome c, nitrite reductase associated (NirC)
nirF
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134

Gene: Reut_B5013: heme d1 biosynthesis protein (NirF)
 
Ralstonia eutropha H16

Gene: H16_B2279: heme d1 biosynthesis protein (NirF)
 
Cupriavidus taiwanensis

Gene: RALTA_B2051: heme d1 biosynthesis protein (NirF)
heme d1 biosynthesis protein (NirF)
nirD
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134

Gene: Reut_B5014: heme d1 biosynthesis protein (NirD)
 
Ralstonia eutropha H16

Gene: H16_B2280: heme d1 biosynthesis protein (NirD)
 
Cupriavidus taiwanensis

Gene: RALTA_B2052: heme d1 biosynthesis protein (NirD)
heme d1 biosynthesis protein (NirD)
nirG
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134

Gene: Reut_B5015: heme d1 biosynthesis protein (NirG)
 
Ralstonia eutropha H16

Gene: H16_B2281: heme d1 biosynthesis protein (NirG)
 
Cupriavidus taiwanensis

Gene: RALTA_B2053: heme d1 biosynthesis protein (NirG)
heme d1 biosynthesis protein (NirG)
nirH
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34
 
Ralstonia eutropha JMP134

Gene: Reut_B5016: heme d1 biosynthesis protein (NirH)
 
Ralstonia eutropha H16

Gene: H16_B2282: heme d1 biosynthesis protein (NirH)
 
Cupriavidus taiwanensis

Gene: RALTA_B2054: heme d1 biosynthesis protein (NirH)
heme d1 biosynthesis protein (NirH)
nirJ
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34

Gene: Rmet_3170: heme d1 biosynthesis protein (NirJ)
 
Ralstonia eutropha JMP134

Gene: Reut_B5017: heme d1 biosynthesis protein (NirJ)
 
Ralstonia eutropha H16

Gene: H16_B2283: heme d1 biosynthesis protein (NirJ)
 
Cupriavidus taiwanensis

Gene: RALTA_B2055: heme d1 biosynthesis protein (NirJ)
heme d1 biosynthesis protein (NirJ)
nirN
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34

Gene: Rmet_3169: C-type cytochrome (NirN)
 
Ralstonia eutropha JMP134

Gene: Reut_B5018: C-type cytochrome (NirN)
 
Ralstonia eutropha H16

Gene: H16_B2284: C-type cytochrome (NirN)
 
Cupriavidus taiwanensis

Gene: RALTA_B2056: C-type cytochrome (NirN)
C-type cytochrome (NirN)
nirE
 
Ralstonia solanacearum GMI1000
 
Ralstonia pickettii 12J
 
Ralstonia metallidurans CH34

Gene: Rmet_3168: Uroporphyrin-III C-methyltransferase
 
Ralstonia eutropha JMP134

Gene: Reut_B5019: Uroporphyrin-III C-methyltransferase
 
Ralstonia eutropha H16

Gene: H16_B2285: Uroporphyrin-III C-methyltransferase
 
Cupriavidus taiwanensis

Gene: RALTA_B2057: Uroporphyrin-III C-methyltransferase
Uroporphyrin-III C-methyltransferase
 
CRON 3.
nosZ
*
Ralstonia solanacearum GMI1000

Site:
position = -126
score = 4.68648
sequence = GTGTGACGAAAGTCAATT

Gene: RSp1368: nitrous oxide reductase
*
Ralstonia pickettii 12J

Site:
position = -136
score = 4.68648
sequence = GTGTGACGAAAGTCAATT

Gene: Rpic_4059: nitrous oxide reductase
*
Ralstonia metallidurans CH34

Site:
position = -165
score = 5.10825
sequence = ACATGACTTATGTCAAGC

Gene: Rmet_4917: nitrous oxide reductase
 
Ralstonia eutropha JMP134
*
Ralstonia eutropha H16

Site:
position = -110
score = 5.04262
sequence = TTTTGATTCGAGTCAAGT

Gene: PHG252: nitrous oxide reductase
 
Cupriavidus taiwanensis
nitrous oxide reductase
nosR
 
Ralstonia solanacearum GMI1000

Gene: RSp1369: putative transmembrane regulatory protein nosR
 
Ralstonia pickettii 12J

Gene: Rpic_4060: putative transmembrane regulatory protein nosR
 
Ralstonia metallidurans CH34

Gene: Rmet_4916: putative transmembrane regulatory protein nosR
 
Ralstonia eutropha JMP134
 
Ralstonia eutropha H16

Gene: PHG251: putative transmembrane regulatory protein nosR
 
Cupriavidus taiwanensis
putative transmembrane regulatory protein nosR
nosD
 
Ralstonia solanacearum GMI1000

Gene: RSp1370: putative copper binding periplasmic protein
 
Ralstonia pickettii 12J

Gene: Rpic_4061: putative copper binding periplasmic protein
 
Ralstonia metallidurans CH34

Gene: Rmet_4915: putative copper binding periplasmic protein
 
Ralstonia eutropha JMP134
 
Ralstonia eutropha H16

Gene: PHG250: putative copper binding periplasmic protein
 
Cupriavidus taiwanensis
putative copper binding periplasmic protein
nosF
 
Ralstonia solanacearum GMI1000

Gene: RSp1371: putative copper ATP-binding ABC transporter
 
Ralstonia pickettii 12J

Gene: Rpic_4062: putative copper ATP-binding ABC transporter
 
Ralstonia metallidurans CH34

Gene: Rmet_4914: putative copper ATP-binding ABC transporter
 
Ralstonia eutropha JMP134
 
Ralstonia eutropha H16

Gene: PHG249: putative copper ATP-binding ABC transporter
 
Cupriavidus taiwanensis
putative copper ATP-binding ABC transporter
nosY
 
Ralstonia solanacearum GMI1000

Gene: RSp1372: putative NosY transmembrane protein
 
Ralstonia pickettii 12J

Gene: Rpic_4063: putative NosY transmembrane protein
 
Ralstonia metallidurans CH34

Gene: Rmet_4913: putative NosY transmembrane protein
 
Ralstonia eutropha JMP134
 
Ralstonia eutropha H16

Gene: PHG248: putative NosY transmembrane protein
 
Cupriavidus taiwanensis
putative NosY transmembrane protein
nosL
 
Ralstonia solanacearum GMI1000

Gene: RSp1373: NosL family protein
 
Ralstonia pickettii 12J

Gene: Rpic_4064: NosL family protein
 
Ralstonia metallidurans CH34

Gene: Rmet_4912: NosL family protein
 
Ralstonia eutropha JMP134
 
Ralstonia eutropha H16

Gene: PHG247: NosL family protein
 
Cupriavidus taiwanensis
NosL family protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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