Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Propagation of HTCS_Rgu-2 regulog to Bacteroides plebeius DSM 17135

Reference regulog properties
Source regulog: HTCS_Rgu-2 - Bacteroidaceae
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector:
Phylum: Bacteroidetes
Propagated regulon:
Target genome Bacteroides plebeius DSM 17135
Orthologous TF(s) BACPLE_02293, BACPLE_03129
Regulated genes 4
Built upon 39 sites [see more]
Predicted regulatory interactions in Bacteroides plebeius DSM 17135
Locus tag Position Score Sequence
Position: -92
Score: 9.7
Sequence: TATACAAATTTACA-(6)-TGTACAATACTCCA
Locus tag: BACPLE_00251
BACPLE_00251 -92 9.7 TATACAAATTTACA-(6)-TGTACAATACTCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BT4172
Ortholog function: Conserved hypothetical protein
Bacteroides dorei DSM 17855 BACDOR_00396 -108 8.9 TGAACGAATAAACA-(6)-TGAATGAATTTCTA
Bacteroides ovatus ATCC 8483 BACOVA_04967 -89 8.7 TGAACGAATCGCCA-(6)-TGGATAATATTCTA
Bacteroides plebeius DSM 17135 BACPLE_00251 -92 9.7 TATACAAATTTACA-(6)-TGTACAATACTCCA
Bacteroides thetaiotaomicron VPI-5482 BT4172 -123 9.6 TGAACAAATATCCA-(6)-TGAATGATATTCTA
Bacteroides vulgatus ATCC 8482 BVU_0159 -108 8.9 TGAACGAATAAACA-(6)-TGAATGAATTTCTA
Position: -96
Score: 8.6
Sequence: TGTATGATAATCGA-(6)-TGTATAATAATCCA
Locus tag: BACPLE_00253
BACPLE_00253 -96 8.6 TGTATGATAATCGA-(6)-TGTATAATAATCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: BT4147
Ortholog function: Conserved hypothetical protein
Bacteroides ovatus ATCC 8483 BACOVA_04947 -141 8.2 TGGACAATATTTCA-(6)-TGTAGTTTTGTACA
-83 8.5 GATACAATATTCTA-(6)-TGTACATCTTTCTA
Bacteroides plebeius DSM 17135 BACPLE_00253 -96 8.6 TGTATGATAATCGA-(6)-TGTATAATAATCCA
Bacteroides thetaiotaomicron VPI-5482 BT4147 -111 8.5 GATACAATATTCTA-(6)-TGTACATCTTTCTA
Position: -96
Score: 8.5
Sequence: TACACAATATTCCA-(6)-TGAAGAATTATCGA
Locus tag: BACPLE_00503
BACPLE_00503 -96 8.5 TACACAATATTCCA-(6)-TGAAGAATTATCGA
Supported by regulated orthologs from reference regulons
Ortholog gene name: bguA
Ortholog function: Beta-glucuronidase (EC 3.2.1.31)
Bacteroides dorei DSM 17855 BACDOR_00368 -94 9.3 TATACGAATTTCCA-(6)-TGTACTTCTTTCTA
Bacteroides ovatus ATCC 8483 BACOVA_04950 -141 8.2 TGGACAATATTTCA-(6)-TGTAGTTTTGTACA
-83 8.5 GATACAATATTCTA-(6)-TGTACATCTTTCTA
Bacteroides plebeius DSM 17135 BACPLE_00503 -96 8.5 TACACAATATTCCA-(6)-TGAAGAATTATCGA
Bacteroides thetaiotaomicron VPI-5482 BT4151 -111 8.5 GATACAATATTCTA-(6)-TGTACATCTTTCTA
Bacteroides vulgatus ATCC 8482 BVU_0181 -94 9.3 TATACGAATTTCCA-(6)-TGTACTTCTTTCTA
Position: -93
Score: 8.9
Sequence: TGTACAAAAGCACA-(6)-TGTACGATATTCCA
Locus tag: BACPLE_03132
BACPLE_03132 -93 8.9 TGTACAAAAGCACA-(6)-TGTACGATATTCCA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhaH
Ortholog function: Rhamnogalacturonyl hydrolase
Bacteroides dorei DSM 17855 BACDOR_00395 -108 8.9 TGAACGAATAAACA-(6)-TGAATGAATTTCTA
Bacteroides ovatus ATCC 8483 BACOVA_04972 -115 8.4 TGAACGAATTTAAA-(6)-TGCACGGAAATCCA
Bacteroides plebeius DSM 17135 BACPLE_03132 -93 8.9 TGTACAAAAGCACA-(6)-TGTACGATATTCCA
Bacteroides thetaiotaomicron VPI-5482 BT4173 -117 9.2 TGGACAAATTTAAA-(6)-TGGACAATATTCCA
Bacteroides vulgatus ATCC 8482 BVU_0160 -108 8.9 TGAACGAATAAACA-(6)-TGAATGAATTTCTA