Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Propagation of HTCS_Rgu-1 regulog to Bacteroides finegoldii DSM 17565

Reference regulog properties
Source regulog: HTCS_Rgu-1 - Bacteroidaceae
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector: Rhamogalacturonate oligosaccharides; Galacturonate oligosaccharides
Phylum: Bacteroidetes
Propagated regulon:
Target genome Bacteroides finegoldii DSM 17565
Orthologous TF(s) BACFIN_01169
Regulated genes 3
Built upon 26 sites [see more]
Predicted regulatory interactions in Bacteroides finegoldii DSM 17565
Locus tag Position Score Sequence
Position: -151
Score: 9
Sequence: CAAAAAATACAC-(9)-CAATTAGTCCAC
Locus tag: BACFIN_00940
BACFIN_00940 -151 9 CAAAAAATACAC-(9)-CAATTAGTCCAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: pehX1
Ortholog function: Polygalacturonase (EC 3.2.1.15 )
Bacteroides cellulosilyticus DSM 14838 BACCELL_03143 -273 8.8 CAAAAAATCCAC-(9)-CAAATTGTGCAC
Bacteroides eggerthii DSM 20697 BACEGG_00876 -272 9.2 CAAAAAATACAC-(9)-CAATTAGTACAC
Bacteroides ovatus ATCC 8483 BACOVA_05040 -267 9 CAAAAAATACAC-(9)-CAATTAGTCCAC
Bacteroides stercoris ATCC 43183 BACSTE_03276 -205 8.4 CAAAAAATACAC-(9)-CAATTTGTACAC
Bacteroides thetaiotaomicron VPI-5482 BT4187 -265 9 CAAAAAATACAC-(9)-CAATAACTCCAC
Position: -128
Score: 9.6
Sequence: CAAAAAATACGA-(9)-CAAATATTACAC
Locus tag: BACFIN_01162
BACFIN_01162 -128 9.6 CAAAAAATACGA-(9)-CAAATATTACAC
Supported by regulated orthologs from reference regulons
Ortholog gene name: susC_Rgu-1
Ortholog function: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
Bacteroides ovatus ATCC 8483 BACOVA_04911 -128 9.5 CAAAAAATACGA-(9)-CAAATATTGCAC
Position: -136
Score: 8.7
Sequence: CAAAAAATACAC-(9)-TAAAAAATCCTA
Locus tag: BACFIN_01171
BACFIN_01171 -136 8.7 CAAAAAATACAC-(9)-TAAAAAATCCTA
Supported by regulated orthologs from reference regulons
Ortholog gene name: rhiN
Ortholog function: Rhamnogalacturonyl hydrolase (EC 3.2.1.172)
Bacteroides cellulosilyticus DSM 14838 BACCELL_03119 -106 9.3 TAAATAATGCAC-(9)-CGAAAAGTACAC
Bacteroides dorei DSM 17855 BACDOR_03278 -105 9.4 CAAATAATACAC-(9)-TGAAAAGTGCAC
Bacteroides eggerthii DSM 20697 BACEGG_00863 -107 9.7 CAAAAAATGCAC-(9)-CAAAAAATGCAC
Bacteroides ovatus ATCC 8483 BACOVA_04900 -155 8.9 CAAAAAATGCAC-(9)-TAAAAAATCCCA
Bacteroides plebeius DSM 17135 BACPLE_03451 -108 7.7 CAATTTTTATAC-(9)-TGAAAACTACAC
Bacteroides stercoris ATCC 43183 BACSTE_03304 -107 9.8 CAAAAAATGCAC-(9)-CAAAAAGTGCAC
Bacteroides thetaiotaomicron VPI-5482 BT4108 -105 9.1 CAAAAAATACAC-(9)-TAAAAAATCCCA
Bacteroides vulgatus ATCC 8482 BVU_1797 -105 9.4 CAAATAATACAC-(9)-TGAAAAGTGCAC