Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Draft regulons reconstructed by automated conservative propagation

Template (reference) regulons Propagated regulons
Regulog collection Genomes TF regulons Taxonomic group Genomes TF regulons
Bacteroidaceae 11 223 Bacteroidaceae 22 254
Studied genomes and reconstructed regulon statistics
Genomes Regulons Sites
* Bacteroides cellulosilyticus DSM 14838 18 51
* Bacteroides coprophilus DSM 18228 9 19
* Bacteroides dorei DSM 17855 19 59
* Bacteroides eggerthii DSM 20697 16 57
Bacteroides finegoldii DSM 17565 19 51
* Bacteroides fragilis NCTC 9343 13 56
Bacteroides fragilis YCH46 12 54
* Bacteroides ovatus ATCC 8483 27 67
* Bacteroides plebeius DSM 17135 20 50
* Bacteroides stercoris ATCC 43183 13 39
* Bacteroides thetaiotaomicron VPI-5482 34 99
* Bacteroides uniformis ATCC 8492 15 50
* Bacteroides vulgatus ATCC 8482 19 69
Parabacteroides distasonis ATCC 8503 4 10
Parabacteroides johnsonii DSM 18315 8 12
Parabacteroides merdae ATCC 43184 5 10
Prevotella copri DSM 18205 2 3
Prevotella ruminicola 23 1 1
* - reference regulons from this genome have been used as a template for the conservative propagation
Genomic distribution of propagated regulons
Reference regulog
AraR -
2 AraR

Bacteroides cellulosilyticus DSM 14838
-
1 AraR

Bacteroides dorei DSM 17855
1 AraR

Bacteroides eggerthii DSM 20697
- - -
2 AraR

Bacteroides ovatus ATCC 8483
2 AraR

Bacteroides plebeius DSM 17135
-
2 AraR

Bacteroides thetaiotaomicron VPI-5482
2 AraR

Bacteroides uniformis ATCC 8492
1 AraR

Bacteroides vulgatus ATCC 8482
- - - - - - - -
ArgR - -
1 ArgR

Bacteroides coprophilus DSM 18228
1 ArgR

Bacteroides dorei DSM 17855
1 ArgR

Bacteroides eggerthii DSM 20697
-
1 ArgR

Bacteroides fragilis NCTC 9343
1 ArgR

Bacteroides fragilis YCH46
1 ArgR

Bacteroides ovatus ATCC 8483
1 ArgR

Bacteroides plebeius DSM 17135
1 ArgR

Bacteroides stercoris ATCC 43183
1 ArgR

Bacteroides thetaiotaomicron VPI-5482
1 ArgR

Bacteroides uniformis ATCC 8492
1 ArgR

Bacteroides vulgatus ATCC 8482
- -
1 ArgR

Parabacteroides johnsonii DSM 18315
1 ArgR

Parabacteroides merdae ATCC 43184
- - -
1 ArgR

Prevotella ruminicola 23
Crp -
10 Crp

Bacteroides cellulosilyticus DSM 14838
2 Crp

Bacteroides coprophilus DSM 18228
9 Crp

Bacteroides dorei DSM 17855
9 Crp

Bacteroides eggerthii DSM 20697
9 Crp

Bacteroides finegoldii DSM 17565
10 Crp

Bacteroides fragilis NCTC 9343
10 Crp

Bacteroides fragilis YCH46
5 Crp

Bacteroides ovatus ATCC 8483
3 Crp

Bacteroides plebeius DSM 17135
9 Crp

Bacteroides stercoris ATCC 43183
12 Crp

Bacteroides thetaiotaomicron VPI-5482
10 Crp

Bacteroides uniformis ATCC 8492
11 Crp

Bacteroides vulgatus ATCC 8482
-
3 Crp

Parabacteroides distasonis ATCC 8503
3 Crp

Parabacteroides johnsonii DSM 18315
4 Crp

Parabacteroides merdae ATCC 43184
- -
1 Crp

Prevotella copri DSM 18205
-
FucR -
1 FucR

Bacteroides cellulosilyticus DSM 14838
-
1 FucR

Bacteroides dorei DSM 17855
-
1 FucR

Bacteroides finegoldii DSM 17565
2 FucR

Bacteroides fragilis NCTC 9343
2 FucR

Bacteroides fragilis YCH46
1 FucR

Bacteroides ovatus ATCC 8483
1 FucR

Bacteroides plebeius DSM 17135
-
1 FucR

Bacteroides thetaiotaomicron VPI-5482
-
1 FucR

Bacteroides vulgatus ATCC 8482
- - - - - - - -
Fur - -
1 Fur

Bacteroides coprophilus DSM 18228
1 Fur

Bacteroides dorei DSM 17855
1 Fur

Bacteroides eggerthii DSM 20697
1 Fur

Bacteroides finegoldii DSM 17565
1 Fur

Bacteroides fragilis NCTC 9343
1 Fur

Bacteroides fragilis YCH46
-
1 Fur

Bacteroides plebeius DSM 17135
-
1 Fur

Bacteroides thetaiotaomicron VPI-5482
1 Fur

Bacteroides uniformis ATCC 8492
1 Fur

Bacteroides vulgatus ATCC 8482
- - - - - - - -
HTCS_Aga-1 - - - - - - - - - - -
3 HTCS_Aga-1

Bacteroides thetaiotaomicron VPI-5482
- - - - - - - - - -
HTCS_Ara-1 -
1 HTCS_Ara-1

Bacteroides cellulosilyticus DSM 14838
-
2 HTCS_Ara-1

Bacteroides dorei DSM 17855
2 HTCS_Ara-1

Bacteroides eggerthii DSM 20697
- - - -
2 HTCS_Ara-1

Bacteroides plebeius DSM 17135
-
2 HTCS_Ara-1

Bacteroides thetaiotaomicron VPI-5482
-
2 HTCS_Ara-1

Bacteroides vulgatus ATCC 8482
- - - - - -
1 HTCS_Ara-1

Prevotella copri DSM 18205
-
HTCS_Ara-2 -
1 HTCS_Ara-2

Bacteroides cellulosilyticus DSM 14838
-
1 HTCS_Ara-2

Bacteroides dorei DSM 17855
-
2 HTCS_Ara-2

Bacteroides finegoldii DSM 17565
- -
1 HTCS_Ara-2

Bacteroides ovatus ATCC 8483
2 HTCS_Ara-2

Bacteroides plebeius DSM 17135
-
3 HTCS_Ara-2

Bacteroides thetaiotaomicron VPI-5482
-
1 HTCS_Ara-2

Bacteroides vulgatus ATCC 8482
- - - - - - - -
HTCS_Fru - -
1 HTCS_Fru

Bacteroides coprophilus DSM 18228
1 HTCS_Fru

Bacteroides dorei DSM 17855
-
2 HTCS_Fru

Bacteroides finegoldii DSM 17565
2 HTCS_Fru

Bacteroides fragilis NCTC 9343
1 HTCS_Fru

Bacteroides fragilis YCH46
3 HTCS_Fru

Bacteroides ovatus ATCC 8483
2 HTCS_Fru

Bacteroides plebeius DSM 17135
-
4 HTCS_Fru

Bacteroides thetaiotaomicron VPI-5482
2 HTCS_Fru

Bacteroides uniformis ATCC 8492
2 HTCS_Fru

Bacteroides vulgatus ATCC 8482
- -
1 HTCS_Fru

Parabacteroides johnsonii DSM 18315
- - - - -
HTCS_Hep - - - - -
1 HTCS_Hep

Bacteroides finegoldii DSM 17565
- -
3 HTCS_Hep

Bacteroides ovatus ATCC 8483
-
1 HTCS_Hep

Bacteroides stercoris ATCC 43183
3 HTCS_Hep

Bacteroides thetaiotaomicron VPI-5482
- - - - - - - - - -
HTCS_Hya -
2 HTCS_Hya

Bacteroides cellulosilyticus DSM 14838
- -
2 HTCS_Hya

Bacteroides eggerthii DSM 20697
2 HTCS_Hya

Bacteroides finegoldii DSM 17565
- -
2 HTCS_Hya

Bacteroides ovatus ATCC 8483
1 HTCS_Hya

Bacteroides plebeius DSM 17135
3 HTCS_Hya

Bacteroides stercoris ATCC 43183
2 HTCS_Hya

Bacteroides thetaiotaomicron VPI-5482
1 HTCS_Hya

Bacteroides uniformis ATCC 8492
- - - - - - - - -
HTCS_Man-1 - - - - - - - -
1 HTCS_Man-1

Bacteroides ovatus ATCC 8483
- -
1 HTCS_Man-1

Bacteroides thetaiotaomicron VPI-5482
- - - - - - - - - -
HTCS_Man-2 - - - - - - - - - - -
1 HTCS_Man-2

Bacteroides thetaiotaomicron VPI-5482
- - - - - - - - - -
HTCS_Man-3 -
1 HTCS_Man-3

Bacteroides cellulosilyticus DSM 14838
- - - -
1 HTCS_Man-3

Bacteroides fragilis NCTC 9343
- - - -
4 HTCS_Man-3

Bacteroides thetaiotaomicron VPI-5482
1 HTCS_Man-3

Bacteroides uniformis ATCC 8492
- - - - - - - - -
HTCS_Ogl-1 - - - - - - - - - - -
1 HTCS_Ogl-1

Bacteroides thetaiotaomicron VPI-5482
- - - - - - - - - -
HTCS_Ogl-2 - - - - - - - - - - -
1 HTCS_Ogl-2

Bacteroides thetaiotaomicron VPI-5482
- - - - - - - - - -
HTCS_Pga - - - - -
1 HTCS_Pga

Bacteroides finegoldii DSM 17565
- -
1 HTCS_Pga

Bacteroides ovatus ATCC 8483
- - - - - - - - - - - - -
HTCS_Rgu-1 -
3 HTCS_Rgu-1

Bacteroides cellulosilyticus DSM 14838
-
4 HTCS_Rgu-1

Bacteroides dorei DSM 17855
3 HTCS_Rgu-1

Bacteroides eggerthii DSM 20697
3 HTCS_Rgu-1

Bacteroides finegoldii DSM 17565
- -
2 HTCS_Rgu-1

Bacteroides ovatus ATCC 8483
2 HTCS_Rgu-1

Bacteroides plebeius DSM 17135
1 HTCS_Rgu-1

Bacteroides stercoris ATCC 43183
5 HTCS_Rgu-1

Bacteroides thetaiotaomicron VPI-5482
-
4 HTCS_Rgu-1

Bacteroides vulgatus ATCC 8482
- - - - - - - -
HTCS_Rgu-2 - - -
7 HTCS_Rgu-2

Bacteroides dorei DSM 17855
- - - -
6 HTCS_Rgu-2

Bacteroides ovatus ATCC 8483
4 HTCS_Rgu-2

Bacteroides plebeius DSM 17135
-
7 HTCS_Rgu-2

Bacteroides thetaiotaomicron VPI-5482
-
8 HTCS_Rgu-2

Bacteroides vulgatus ATCC 8482
- - - - - - - -
HcpR -
2 HcpR

Bacteroides cellulosilyticus DSM 14838
3 HcpR

Bacteroides coprophilus DSM 18228
2 HcpR

Bacteroides dorei DSM 17855
- -
2 HcpR

Bacteroides fragilis NCTC 9343
2 HcpR

Bacteroides fragilis YCH46
1 HcpR

Bacteroides ovatus ATCC 8483
3 HcpR

Bacteroides plebeius DSM 17135
-
1 HcpR

Bacteroides thetaiotaomicron VPI-5482
2 HcpR

Bacteroides uniformis ATCC 8492
2 HcpR

Bacteroides vulgatus ATCC 8482
-
1 HcpR

Parabacteroides distasonis ATCC 8503
2 HcpR

Parabacteroides johnsonii DSM 18315
- - - - -
KdgR -
2 KdgR

Bacteroides cellulosilyticus DSM 14838
-
3 KdgR

Bacteroides dorei DSM 17855
2 KdgR

Bacteroides eggerthii DSM 20697
4 KdgR

Bacteroides finegoldii DSM 17565
4 KdgR

Bacteroides fragilis NCTC 9343
4 KdgR

Bacteroides fragilis YCH46
2 KdgR

Bacteroides ovatus ATCC 8483
1 KdgR

Bacteroides plebeius DSM 17135
1 KdgR

Bacteroides stercoris ATCC 43183
4 KdgR

Bacteroides thetaiotaomicron VPI-5482
3 KdgR

Bacteroides uniformis ATCC 8492
4 KdgR

Bacteroides vulgatus ATCC 8482
- -
1 KdgR

Parabacteroides johnsonii DSM 18315
1 KdgR

Parabacteroides merdae ATCC 43184
- - - -
LgoR -
3 LgoR

Bacteroides cellulosilyticus DSM 14838
-
2 LgoR

Bacteroides dorei DSM 17855
1 LgoR

Bacteroides eggerthii DSM 20697
1 LgoR

Bacteroides finegoldii DSM 17565
- -
2 LgoR

Bacteroides ovatus ATCC 8483
- -
3 LgoR

Bacteroides thetaiotaomicron VPI-5482
-
2 LgoR

Bacteroides vulgatus ATCC 8482
- - - - - - - -
ManR - - - -
3 ManR

Bacteroides eggerthii DSM 20697
2 ManR

Bacteroides finegoldii DSM 17565
- -
3 ManR

Bacteroides ovatus ATCC 8483
- -
3 ManR

Bacteroides thetaiotaomicron VPI-5482
- - - - - - - - - -
NanR -
2 NanR

Bacteroides cellulosilyticus DSM 14838
2 NanR

Bacteroides coprophilus DSM 18228
4 NanR

Bacteroides dorei DSM 17855
4 NanR

Bacteroides eggerthii DSM 20697
3 NanR

Bacteroides finegoldii DSM 17565
8 NanR

Bacteroides fragilis NCTC 9343
6 NanR

Bacteroides fragilis YCH46
3 NanR

Bacteroides ovatus ATCC 8483
7 NanR

Bacteroides plebeius DSM 17135
5 NanR

Bacteroides stercoris ATCC 43183
4 NanR

Bacteroides thetaiotaomicron VPI-5482
5 NanR

Bacteroides uniformis ATCC 8492
5 NanR

Bacteroides vulgatus ATCC 8482
-
1 NanR

Parabacteroides distasonis ATCC 8503
1 NanR

Parabacteroides johnsonii DSM 18315
1 NanR

Parabacteroides merdae ATCC 43184
- - - -
NrfR -
1 NrfR

Bacteroides cellulosilyticus DSM 14838
- - - -
1 NrfR

Bacteroides fragilis NCTC 9343
1 NrfR

Bacteroides fragilis YCH46
1 NrfR

Bacteroides ovatus ATCC 8483
1 NrfR

Bacteroides plebeius DSM 17135
-
1 NrfR

Bacteroides thetaiotaomicron VPI-5482
- - - - - - - - - -
PerR -
4 PerR

Bacteroides cellulosilyticus DSM 14838
6 PerR

Bacteroides coprophilus DSM 18228
7 PerR

Bacteroides dorei DSM 17855
4 PerR

Bacteroides eggerthii DSM 20697
1 PerR

Bacteroides finegoldii DSM 17565
3 PerR

Bacteroides fragilis NCTC 9343
3 PerR

Bacteroides fragilis YCH46
3 PerR

Bacteroides ovatus ATCC 8483
5 PerR

Bacteroides plebeius DSM 17135
4 PerR

Bacteroides stercoris ATCC 43183
3 PerR

Bacteroides thetaiotaomicron VPI-5482
4 PerR

Bacteroides uniformis ATCC 8492
7 PerR

Bacteroides vulgatus ATCC 8482
- - - - - - - -
RhaR -
1 RhaR

Bacteroides cellulosilyticus DSM 14838
-
1 RhaR

Bacteroides dorei DSM 17855
1 RhaR

Bacteroides eggerthii DSM 20697
- - - - -
1 RhaR

Bacteroides stercoris ATCC 43183
1 RhaR

Bacteroides thetaiotaomicron VPI-5482
1 RhaR

Bacteroides uniformis ATCC 8492
1 RhaR

Bacteroides vulgatus ATCC 8482
- - - - - - - -
SusR - -
1 SusR

Bacteroides coprophilus DSM 18228
1 SusR

Bacteroides dorei DSM 17855
- - - -
2 SusR

Bacteroides ovatus ATCC 8483
2 SusR

Bacteroides plebeius DSM 17135
-
1 SusR

Bacteroides thetaiotaomicron VPI-5482
-
2 SusR

Bacteroides vulgatus ATCC 8482
- - - - - - - -
SusR2 - - - - -
1 SusR2

Bacteroides finegoldii DSM 17565
- -
1 SusR2

Bacteroides ovatus ATCC 8483
-
1 SusR2

Bacteroides stercoris ATCC 43183
1 SusR2

Bacteroides thetaiotaomicron VPI-5482
- - - - - - - - - -
SusR3 - - - - -
1 SusR3

Bacteroides finegoldii DSM 17565
- -
1 SusR3

Bacteroides ovatus ATCC 8483
- -
1 SusR3

Bacteroides thetaiotaomicron VPI-5482
- - - - - - - - - -
SusR4 - - - - - - - -
1 SusR4

Bacteroides ovatus ATCC 8483
- -
1 SusR4

Bacteroides thetaiotaomicron VPI-5482
- - - - - - - - - -
UxaR -
2 UxaR

Bacteroides cellulosilyticus DSM 14838
- -
2 UxaR

Bacteroides eggerthii DSM 20697
2 UxaR

Bacteroides finegoldii DSM 17565
- -
2 UxaR

Bacteroides ovatus ATCC 8483
-
2 UxaR

Bacteroides stercoris ATCC 43183
2 UxaR

Bacteroides thetaiotaomicron VPI-5482
2 UxaR

Bacteroides uniformis ATCC 8492
- - - - - - - - -
UxuR - - - - - - - -
1 UxuR

Bacteroides ovatus ATCC 8483
1 UxuR

Bacteroides plebeius DSM 17135
-
1 UxuR

Bacteroides thetaiotaomicron VPI-5482
- - - - - - - - - -
XylR -
1 XylR

Bacteroides cellulosilyticus DSM 14838
-
2 XylR

Bacteroides dorei DSM 17855
1 XylR

Bacteroides eggerthii DSM 20697
2 XylR

Bacteroides finegoldii DSM 17565
1 XylR

Bacteroides fragilis NCTC 9343
1 XylR

Bacteroides fragilis YCH46
2 XylR

Bacteroides ovatus ATCC 8483
1 XylR

Bacteroides plebeius DSM 17135
1 XylR

Bacteroides stercoris ATCC 43183
2 XylR

Bacteroides thetaiotaomicron VPI-5482
1 XylR

Bacteroides uniformis ATCC 8492
3 XylR

Bacteroides vulgatus ATCC 8482
- -
1 XylR

Parabacteroides johnsonii DSM 18315
- - - - -
Zur -
3 Zur

Bacteroides cellulosilyticus DSM 14838
1 Zur

Bacteroides coprophilus DSM 18228
3 Zur

Bacteroides dorei DSM 17855
2 Zur

Bacteroides eggerthii DSM 20697
2 Zur

Bacteroides finegoldii DSM 17565
1 Zur

Bacteroides fragilis NCTC 9343
1 Zur

Bacteroides fragilis YCH46
3 Zur

Bacteroides ovatus ATCC 8483
1 Zur

Bacteroides plebeius DSM 17135
1 Zur

Bacteroides stercoris ATCC 43183
3 Zur

Bacteroides thetaiotaomicron VPI-5482
1 Zur

Bacteroides uniformis ATCC 8492
3 Zur

Bacteroides vulgatus ATCC 8482
-
2 Zur

Parabacteroides distasonis ATCC 8503
1 Zur

Parabacteroides johnsonii DSM 18315
1 Zur

Parabacteroides merdae ATCC 43184
- - - -
-- Legend --
5 Orthologous regulator is detected and five members of regulon are predicted in a target genome
- Orthologous regulator is detected in a target genome but no potential members of regulon where identified
3 Three potential members of regulon were found, but orthologous regulator could not be detected in a target genome.
3 Neither orthologous regulator no potential members of regulon were found in a target genome