Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Draft regulons reconstructed by automated conservative propagation

Template (reference) regulons Propagated regulons
Regulog collection Genomes TF regulons Taxonomic group Genomes TF regulons
Thermotogales 11 245 Thermotogales 11 223
Studied genomes and reconstructed regulon statistics
Genomes Regulons Sites
* Fervidobacterium nodosum Rt17-B1 11 27
* Petrotoga mobilis SJ95 10 18
* Thermosipho africanus TCF52B 14 35
* Thermosipho melanesiensis BI429 13 24
* Thermotoga lettingae TMO 21 37
* Thermotoga maritima MSB8 29 77
* Thermotoga naphthophila RKU-10 31 76
* Thermotoga neapolitana DSM 4359 28 64
* Thermotoga petrophila RKU-1 29 77
* Thermotoga sp. RQ2 27 78
* Thermotogales bacterium TBF 19.5.1 10 18
* - reference regulons from this genome have been used as a template for the conservative propagation
Genomic distribution of propagated regulons
Reference regulog
AraR - - - -
2 AraR

Thermotoga lettingae TMO
2 AraR

Thermotoga maritima MSB8
3 AraR

Thermotoga naphthophila RKU-10
2 AraR

Thermotoga neapolitana DSM 4359
5 AraR

Thermotoga petrophila RKU-1
5 AraR

Thermotoga sp. RQ2
-
ArgR - - - - -
2 ArgR

Thermotoga maritima MSB8
2 ArgR

Thermotoga naphthophila RKU-10
2 ArgR

Thermotoga neapolitana DSM 4359
2 ArgR

Thermotoga petrophila RKU-1
2 ArgR

Thermotoga sp. RQ2
-
BglR - - - -
2 BglR

Thermotoga lettingae TMO
1 BglR

Thermotoga maritima MSB8
1 BglR

Thermotoga naphthophila RKU-10
1 BglR

Thermotoga neapolitana DSM 4359
-
1 BglR

Thermotoga sp. RQ2
-
CelR
1 CelR

Fervidobacterium nodosum Rt17-B1
- - -
1 CelR

Thermotoga lettingae TMO
7 CelR

Thermotoga maritima MSB8
4 CelR

Thermotoga naphthophila RKU-10
4 CelR

Thermotoga neapolitana DSM 4359
4 CelR

Thermotoga petrophila RKU-1
7 CelR

Thermotoga sp. RQ2
-
ChiR - - -
1 ChiR

Thermosipho melanesiensis BI429
1 ChiR

Thermotoga lettingae TMO
1 ChiR

Thermotoga maritima MSB8
1 ChiR

Thermotoga naphthophila RKU-10
1 ChiR

Thermotoga neapolitana DSM 4359
1 ChiR

Thermotoga petrophila RKU-1
1 ChiR

Thermotoga sp. RQ2
-
Fur
1 Fur

Fervidobacterium nodosum Rt17-B1
-
3 Fur

Thermosipho africanus TCF52B
1 Fur

Thermosipho melanesiensis BI429
1 Fur

Thermotoga lettingae TMO
5 Fur

Thermotoga maritima MSB8
3 Fur

Thermotoga naphthophila RKU-10
2 Fur

Thermotoga neapolitana DSM 4359
4 Fur

Thermotoga petrophila RKU-1
4 Fur

Thermotoga sp. RQ2
1 Fur

Thermotogales bacterium TBF 19.5.1
GalR
2 GalR

Fervidobacterium nodosum Rt17-B1
1 GalR

Petrotoga mobilis SJ95
1 GalR

Thermosipho africanus TCF52B
-
3 GalR

Thermotoga lettingae TMO
2 GalR

Thermotoga maritima MSB8
2 GalR

Thermotoga naphthophila RKU-10
2 GalR

Thermotoga neapolitana DSM 4359
2 GalR

Thermotoga petrophila RKU-1
2 GalR

Thermotoga sp. RQ2
-
GloR -
1 GloR

Petrotoga mobilis SJ95
- -
1 GloR

Thermotoga lettingae TMO
2 GloR

Thermotoga maritima MSB8
2 GloR

Thermotoga naphthophila RKU-10
- -
2 GloR

Thermotoga sp. RQ2
-
GluR - - - - - -
2 GluR

Thermotoga naphthophila RKU-10
1 GluR

Thermotoga neapolitana DSM 4359
1 GluR

Thermotoga petrophila RKU-1
2 GluR

Thermotoga sp. RQ2
-
HcpR
2 HcpR

Fervidobacterium nodosum Rt17-B1
2 HcpR

Petrotoga mobilis SJ95
2 HcpR

Thermosipho africanus TCF52B
1 HcpR

Thermosipho melanesiensis BI429
2 HcpR

Thermotoga lettingae TMO
2 HcpR

Thermotoga maritima MSB8
2 HcpR

Thermotoga naphthophila RKU-10
1 HcpR

Thermotoga neapolitana DSM 4359
2 HcpR

Thermotoga petrophila RKU-1
2 HcpR

Thermotoga sp. RQ2
2 HcpR

Thermotogales bacterium TBF 19.5.1
HrcA
6 HrcA

Fervidobacterium nodosum Rt17-B1
3 HrcA

Petrotoga mobilis SJ95
4 HrcA

Thermosipho africanus TCF52B
4 HrcA

Thermosipho melanesiensis BI429
3 HrcA

Thermotoga lettingae TMO
4 HrcA

Thermotoga maritima MSB8
5 HrcA

Thermotoga naphthophila RKU-10
5 HrcA

Thermotoga neapolitana DSM 4359
5 HrcA

Thermotoga petrophila RKU-1
4 HrcA

Thermotoga sp. RQ2
3 HrcA

Thermotogales bacterium TBF 19.5.1
IolR - - - - -
1 IolR

Thermotoga maritima MSB8
1 IolR

Thermotoga naphthophila RKU-10
1 IolR

Thermotoga neapolitana DSM 4359
1 IolR

Thermotoga petrophila RKU-1
- -
KdgR - - - - -
6 KdgR

Thermotoga maritima MSB8
6 KdgR

Thermotoga naphthophila RKU-10
4 KdgR

Thermotoga neapolitana DSM 4359
6 KdgR

Thermotoga petrophila RKU-1
4 KdgR

Thermotoga sp. RQ2
-
ManR - - - - -
2 ManR

Thermotoga maritima MSB8
1 ManR

Thermotoga naphthophila RKU-10
1 ManR

Thermotoga neapolitana DSM 4359
1 ManR

Thermotoga petrophila RKU-1
2 ManR

Thermotoga sp. RQ2
-
NiaR - -
1 NiaR

Thermosipho africanus TCF52B
1 NiaR

Thermosipho melanesiensis BI429
1 NiaR

Thermotoga lettingae TMO
1 NiaR

Thermotoga maritima MSB8
1 NiaR

Thermotoga naphthophila RKU-10
1 NiaR

Thermotoga neapolitana DSM 4359
1 NiaR

Thermotoga petrophila RKU-1
1 NiaR

Thermotoga sp. RQ2
-
NrdR
1 NrdR

Fervidobacterium nodosum Rt17-B1
2 NrdR

Petrotoga mobilis SJ95
1 NrdR

Thermosipho africanus TCF52B
1 NrdR

Thermosipho melanesiensis BI429
1 NrdR

Thermotoga lettingae TMO
4 NrdR

Thermotoga maritima MSB8
4 NrdR

Thermotoga naphthophila RKU-10
4 NrdR

Thermotoga neapolitana DSM 4359
4 NrdR

Thermotoga petrophila RKU-1
4 NrdR

Thermotoga sp. RQ2
1 NrdR

Thermotogales bacterium TBF 19.5.1
PuuR
1 PuuR

Fervidobacterium nodosum Rt17-B1
-
1 PuuR

Thermosipho africanus TCF52B
1 PuuR

Thermosipho melanesiensis BI429
1 PuuR

Thermotoga lettingae TMO
1 PuuR

Thermotoga maritima MSB8
1 PuuR

Thermotoga naphthophila RKU-10
1 PuuR

Thermotoga neapolitana DSM 4359
1 PuuR

Thermotoga petrophila RKU-1
1 PuuR

Thermotoga sp. RQ2
-
RbsR -
1 RbsR

Petrotoga mobilis SJ95
1 RbsR

Thermosipho africanus TCF52B
-
1 RbsR

Thermotoga lettingae TMO
1 RbsR

Thermotoga maritima MSB8
1 RbsR

Thermotoga naphthophila RKU-10
-
1 RbsR

Thermotoga petrophila RKU-1
-
1 RbsR

Thermotogales bacterium TBF 19.5.1
Rex
7 Rex

Fervidobacterium nodosum Rt17-B1
4 Rex

Petrotoga mobilis SJ95
8 Rex

Thermosipho africanus TCF52B
7 Rex

Thermosipho melanesiensis BI429
5 Rex

Thermotoga lettingae TMO
9 Rex

Thermotoga maritima MSB8
9 Rex

Thermotoga naphthophila RKU-10
9 Rex

Thermotoga neapolitana DSM 4359
10 Rex

Thermotoga petrophila RKU-1
10 Rex

Thermotoga sp. RQ2
4 Rex

Thermotogales bacterium TBF 19.5.1
Rex1
2 Rex1

Fervidobacterium nodosum Rt17-B1
1 Rex1

Petrotoga mobilis SJ95
1 Rex1

Thermosipho africanus TCF52B
1 Rex1

Thermosipho melanesiensis BI429
2 Rex1

Thermotoga lettingae TMO
1 Rex1

Thermotoga maritima MSB8
1 Rex1

Thermotoga naphthophila RKU-10
1 Rex1

Thermotoga neapolitana DSM 4359
1 Rex1

Thermotoga petrophila RKU-1
1 Rex1

Thermotoga sp. RQ2
1 Rex1

Thermotogales bacterium TBF 19.5.1
RhaR - - - - -
3 RhaR

Thermotoga maritima MSB8
3 RhaR

Thermotoga naphthophila RKU-10
3 RhaR

Thermotoga neapolitana DSM 4359
3 RhaR

Thermotoga petrophila RKU-1
- -
TM0766
1 TM0766

Fervidobacterium nodosum Rt17-B1
-
1 TM0766

Thermosipho africanus TCF52B
1 TM0766

Thermosipho melanesiensis BI429
1 TM0766

Thermotoga lettingae TMO
1 TM0766

Thermotoga maritima MSB8
1 TM0766

Thermotoga naphthophila RKU-10
-
1 TM0766

Thermotoga petrophila RKU-1
1 TM0766

Thermotoga sp. RQ2
-
TM1030 - - - -
1 TM1030

Thermotoga lettingae TMO
1 TM1030

Thermotoga maritima MSB8
1 TM1030

Thermotoga naphthophila RKU-10
1 TM1030

Thermotoga neapolitana DSM 4359
1 TM1030

Thermotoga petrophila RKU-1
1 TM1030

Thermotoga sp. RQ2
-
TreR
2 TreR

Fervidobacterium nodosum Rt17-B1
-
2 TreR

Thermosipho africanus TCF52B
2 TreR

Thermosipho melanesiensis BI429
1 TreR

Thermotoga lettingae TMO
1 TreR

Thermotoga maritima MSB8
2 TreR

Thermotoga naphthophila RKU-10
1 TreR

Thermotoga neapolitana DSM 4359
2 TreR

Thermotoga petrophila RKU-1
2 TreR

Thermotoga sp. RQ2
2 TreR

Thermotogales bacterium TBF 19.5.1
UctR - - - - -
1 UctR

Thermotoga maritima MSB8
1 UctR

Thermotoga naphthophila RKU-10
1 UctR

Thermotoga neapolitana DSM 4359
1 UctR

Thermotoga petrophila RKU-1
1 UctR

Thermotoga sp. RQ2
-
UgpR - -
1 UgpR

Thermosipho africanus TCF52B
1 UgpR

Thermosipho melanesiensis BI429
1 UgpR

Thermotoga lettingae TMO
1 UgpR

Thermotoga maritima MSB8
1 UgpR

Thermotoga naphthophila RKU-10
1 UgpR

Thermotoga neapolitana DSM 4359
1 UgpR

Thermotoga petrophila RKU-1
-
1 UgpR

Thermotogales bacterium TBF 19.5.1
UgtR -
1 UgtR

Petrotoga mobilis SJ95
- -
1 UgtR

Thermotoga lettingae TMO
-
1 UgtR

Thermotoga naphthophila RKU-10
1 UgtR

Thermotoga neapolitana DSM 4359
1 UgtR

Thermotoga petrophila RKU-1
1 UgtR

Thermotoga sp. RQ2
1 UgtR

Thermotogales bacterium TBF 19.5.1
UxaR - - - - -
4 UxaR

Thermotoga maritima MSB8
3 UxaR

Thermotoga naphthophila RKU-10
2 UxaR

Thermotoga neapolitana DSM 4359
3 UxaR

Thermotoga petrophila RKU-1
5 UxaR

Thermotoga sp. RQ2
-
XylR - - - -
2 XylR

Thermotoga lettingae TMO
7 XylR

Thermotoga maritima MSB8
7 XylR

Thermotoga naphthophila RKU-10
8 XylR

Thermotoga neapolitana DSM 4359
7 XylR

Thermotoga petrophila RKU-1
8 XylR

Thermotoga sp. RQ2
-
ZnuR - - - - -
1 ZnuR

Thermotoga maritima MSB8
1 ZnuR

Thermotoga naphthophila RKU-10
1 ZnuR

Thermotoga neapolitana DSM 4359
1 ZnuR

Thermotoga petrophila RKU-1
1 ZnuR

Thermotoga sp. RQ2
-
Zur -
1 Zur

Petrotoga mobilis SJ95
1 Zur

Thermosipho africanus TCF52B
1 Zur

Thermosipho melanesiensis BI429
-
1 Zur

Thermotoga maritima MSB8
1 Zur

Thermotoga naphthophila RKU-10
1 Zur

Thermotoga neapolitana DSM 4359
1 Zur

Thermotoga petrophila RKU-1
1 Zur

Thermotoga sp. RQ2
-
-- Legend --
5 Orthologous regulator is detected and five members of regulon are predicted in a target genome
- Orthologous regulator is detected in a target genome but no potential members of regulon where identified
3 Three potential members of regulon were found, but orthologous regulator could not be detected in a target genome.
3 Neither orthologous regulator no potential members of regulon were found in a target genome