Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Draft regulons reconstructed by automated conservative propagation

Template (reference) regulons Propagated regulons
Regulog collection Genomes TF regulons Taxonomic group Genomes TF regulons
Chloroflexi 5 107 Chloroflexi 14 139
Studied genomes and reconstructed regulon statistics
Genomes Regulons Sites
* Chloroflexus aggregans DSM 9485 23 59
Chloroflexus aurantiacus J-10-fl 24 65
* Chloroflexus sp. Y-400-fl 25 62
Dehalococcoides ethenogenes 195 1 2
Dehalococcoides sp. BAV1 1 1
Dehalococcoides sp. CBDB1 1 1
Dehalococcoides sp. GT 1 1
Dehalococcoides sp. VS 1 2
* Herpetosiphon aurantiacus ATCC 23779 13 37
* Roseiflexus castenholzii DSM 13941 20 56
* Roseiflexus sp. RS-1 20 54
Sphaerobacter thermophilus DSM 20745 4 4
Thermobaculum terrenum ATCC BAA-798 3 4
Thermomicrobium roseum DSM 5159 2 2
* - reference regulons from this genome have been used as a template for the conservative propagation
Genomic distribution of propagated regulons
Reference regulog
AcrR
2 AcrR

Chloroflexus aggregans DSM 9485
2 AcrR

Chloroflexus aurantiacus J-10-fl
2 AcrR

Chloroflexus sp. Y-400-fl
- - - - - -
2 AcrR

Roseiflexus castenholzii DSM 13941
1 AcrR

Roseiflexus sp. RS-1
- - -
BfrR
1 BfrR

Chloroflexus aggregans DSM 9485
1 BfrR

Chloroflexus aurantiacus J-10-fl
1 BfrR

Chloroflexus sp. Y-400-fl
- - - - - - - - - - -
Cagg_1084
2 Cagg_1084

Chloroflexus aggregans DSM 9485
2 Cagg_1084

Chloroflexus aurantiacus J-10-fl
2 Cagg_1084

Chloroflexus sp. Y-400-fl
- - - - - - - - - - -
Cagg_3094
1 Cagg_3094

Chloroflexus aggregans DSM 9485
1 Cagg_3094

Chloroflexus aurantiacus J-10-fl
1 Cagg_3094

Chloroflexus sp. Y-400-fl
- - - - - -
1 Cagg_3094

Roseiflexus castenholzii DSM 13941
1 Cagg_3094

Roseiflexus sp. RS-1
1 Cagg_3094

Sphaerobacter thermophilus DSM 20745
- -
Caur_1157
1 Caur_1157

Chloroflexus aggregans DSM 9485
-
1 Caur_1157

Chloroflexus sp. Y-400-fl
- - - - -
3 Caur_1157

Herpetosiphon aurantiacus ATCC 23779
- - - - -
Caur_1779
2 Caur_1779

Chloroflexus aggregans DSM 9485
2 Caur_1779

Chloroflexus aurantiacus J-10-fl
2 Caur_1779

Chloroflexus sp. Y-400-fl
- - - - - - - - - - -
Caur_3401
1 Caur_3401

Chloroflexus aggregans DSM 9485
1 Caur_3401

Chloroflexus aurantiacus J-10-fl
1 Caur_3401

Chloroflexus sp. Y-400-fl
- - - - - -
1 Caur_3401

Roseiflexus castenholzii DSM 13941
1 Caur_3401

Roseiflexus sp. RS-1
- - -
Caur_3448
1 Caur_3448

Chloroflexus aggregans DSM 9485
1 Caur_3448

Chloroflexus aurantiacus J-10-fl
1 Caur_3448

Chloroflexus sp. Y-400-fl
- - - - -
1 Caur_3448

Herpetosiphon aurantiacus ATCC 23779
1 Caur_3448

Roseiflexus castenholzii DSM 13941
1 Caur_3448

Roseiflexus sp. RS-1
- - -
Caur_3587
1 Caur_3587

Chloroflexus aggregans DSM 9485
2 Caur_3587

Chloroflexus aurantiacus J-10-fl
2 Caur_3587

Chloroflexus sp. Y-400-fl
- - - - -
1 Caur_3587

Herpetosiphon aurantiacus ATCC 23779
2 Caur_3587

Roseiflexus castenholzii DSM 13941
2 Caur_3587

Roseiflexus sp. RS-1
- - -
Caur_3866 -
1 Caur_3866

Chloroflexus aurantiacus J-10-fl
1 Caur_3866

Chloroflexus sp. Y-400-fl
- - - - - - - - - - -
FetR
2 FetR

Chloroflexus aggregans DSM 9485
5 FetR

Chloroflexus aurantiacus J-10-fl
5 FetR

Chloroflexus sp. Y-400-fl
- - - - - -
3 FetR

Roseiflexus castenholzii DSM 13941
3 FetR

Roseiflexus sp. RS-1
- - -
HcpR
2 HcpR

Chloroflexus aggregans DSM 9485
- - - - - - - -
1 HcpR

Roseiflexus castenholzii DSM 13941
1 HcpR

Roseiflexus sp. RS-1
- - -
HpdR
1 HpdR

Chloroflexus aggregans DSM 9485
1 HpdR

Chloroflexus aurantiacus J-10-fl
1 HpdR

Chloroflexus sp. Y-400-fl
- - - - -
1 HpdR

Herpetosiphon aurantiacus ATCC 23779
- - - - -
HrcA
2 HrcA

Chloroflexus aggregans DSM 9485
2 HrcA

Chloroflexus aurantiacus J-10-fl
2 HrcA

Chloroflexus sp. Y-400-fl
- - - - -
2 HrcA

Herpetosiphon aurantiacus ATCC 23779
2 HrcA

Roseiflexus castenholzii DSM 13941
2 HrcA

Roseiflexus sp. RS-1
1 HrcA

Sphaerobacter thermophilus DSM 20745
1 HrcA

Thermobaculum terrenum ATCC BAA-798
1 HrcA

Thermomicrobium roseum DSM 5159
KojR
1 KojR

Chloroflexus aggregans DSM 9485
1 KojR

Chloroflexus aurantiacus J-10-fl
1 KojR

Chloroflexus sp. Y-400-fl
- - - - - - - - - - -
LexA
9 LexA

Chloroflexus aggregans DSM 9485
10 LexA

Chloroflexus aurantiacus J-10-fl
9 LexA

Chloroflexus sp. Y-400-fl
2 LexA

Dehalococcoides ethenogenes 195
1 LexA

Dehalococcoides sp. BAV1
1 LexA

Dehalococcoides sp. CBDB1
1 LexA

Dehalococcoides sp. GT
2 LexA

Dehalococcoides sp. VS
9 LexA

Herpetosiphon aurantiacus ATCC 23779
10 LexA

Roseiflexus castenholzii DSM 13941
10 LexA

Roseiflexus sp. RS-1
1 LexA

Sphaerobacter thermophilus DSM 20745
-
1 LexA

Thermomicrobium roseum DSM 5159
MhpR
2 MhpR

Chloroflexus aggregans DSM 9485
2 MhpR

Chloroflexus aurantiacus J-10-fl
2 MhpR

Chloroflexus sp. Y-400-fl
- - - - - - -
1 MhpR

Roseiflexus sp. RS-1
- - -
MntR
2 MntR

Chloroflexus aggregans DSM 9485
1 MntR

Chloroflexus aurantiacus J-10-fl
1 MntR

Chloroflexus sp. Y-400-fl
- - - - -
1 MntR

Herpetosiphon aurantiacus ATCC 23779
2 MntR

Roseiflexus castenholzii DSM 13941
3 MntR

Roseiflexus sp. RS-1
- - -
ModR
1 ModR

Chloroflexus aggregans DSM 9485
2 ModR

Chloroflexus aurantiacus J-10-fl
2 ModR

Chloroflexus sp. Y-400-fl
- - - - - -
1 ModR

Roseiflexus castenholzii DSM 13941
- -
1 ModR

Thermobaculum terrenum ATCC BAA-798
-
NagR -
1 NagR

Chloroflexus aurantiacus J-10-fl
1 NagR

Chloroflexus sp. Y-400-fl
- - - - - -
1 NagR

Roseiflexus castenholzii DSM 13941
1 NagR

Roseiflexus sp. RS-1
- - -
NrdR
1 NrdR

Chloroflexus aggregans DSM 9485
1 NrdR

Chloroflexus aurantiacus J-10-fl
1 NrdR

Chloroflexus sp. Y-400-fl
- - - - -
1 NrdR

Herpetosiphon aurantiacus ATCC 23779
1 NrdR

Roseiflexus castenholzii DSM 13941
1 NrdR

Roseiflexus sp. RS-1
- - -
NrtR
4 NrtR

Chloroflexus aggregans DSM 9485
4 NrtR

Chloroflexus aurantiacus J-10-fl
4 NrtR

Chloroflexus sp. Y-400-fl
- - - - -
4 NrtR

Herpetosiphon aurantiacus ATCC 23779
4 NrtR

Roseiflexus castenholzii DSM 13941
4 NrtR

Roseiflexus sp. RS-1
- - -
Rcas_2304 - - - - - - - - -
1 Rcas_2304

Roseiflexus castenholzii DSM 13941
1 Rcas_2304

Roseiflexus sp. RS-1
- - -
Rcas_3562 - - - - - - - - -
1 Rcas_3562

Roseiflexus castenholzii DSM 13941
1 Rcas_3562

Roseiflexus sp. RS-1
- - -
Rex
11 Rex

Chloroflexus aggregans DSM 9485
10 Rex

Chloroflexus aurantiacus J-10-fl
10 Rex

Chloroflexus sp. Y-400-fl
- - - - -
4 Rex

Herpetosiphon aurantiacus ATCC 23779
11 Rex

Roseiflexus castenholzii DSM 13941
10 Rex

Roseiflexus sp. RS-1
1 Rex

Sphaerobacter thermophilus DSM 20745
2 Rex

Thermobaculum terrenum ATCC BAA-798
-
RhmR -
1 RhmR

Chloroflexus aurantiacus J-10-fl
1 RhmR

Chloroflexus sp. Y-400-fl
- - - - - - - - - - -
SufR
1 SufR

Chloroflexus aggregans DSM 9485
1 SufR

Chloroflexus aurantiacus J-10-fl
1 SufR

Chloroflexus sp. Y-400-fl
- - - - -
1 SufR

Herpetosiphon aurantiacus ATCC 23779
1 SufR

Roseiflexus castenholzii DSM 13941
1 SufR

Roseiflexus sp. RS-1
- - -
Zur
5 Zur

Chloroflexus aggregans DSM 9485
2 Zur

Chloroflexus aurantiacus J-10-fl
1 Zur

Chloroflexus sp. Y-400-fl
- - - - -
7 Zur

Herpetosiphon aurantiacus ATCC 23779
2 Zur

Roseiflexus castenholzii DSM 13941
2 Zur

Roseiflexus sp. RS-1
- - -
Zur2 - - - - - - - -
1 Zur2

Herpetosiphon aurantiacus ATCC 23779
5 Zur2

Roseiflexus castenholzii DSM 13941
5 Zur2

Roseiflexus sp. RS-1
- - -
-- Legend --
5 Orthologous regulator is detected and five members of regulon are predicted in a target genome
- Orthologous regulator is detected in a target genome but no potential members of regulon where identified
3 Three potential members of regulon were found, but orthologous regulator could not be detected in a target genome.
3 Neither orthologous regulator no potential members of regulon were found in a target genome