Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Draft regulons reconstructed by automated conservative propagation

Template (reference) regulons Propagated regulons
Regulog collection Genomes TF regulons Taxonomic group Genomes TF regulons
Clostridiaceae 20 0 Clostridia 61 144
Studied genomes and reconstructed regulon statistics
Genomes Regulons Sites
Alkaliphilus metalliredigenes QYMF 1 7
Anaerococcus hydrogenalis DSM 7454 1 4
Anaerococcus prevotii DSM 20548 2 4
Blautia hansenii DSM 20583 1 3
Clostridiales bacterium 1_7_47_FAA 2 10
* Clostridium acetobutylicum ATCC 824 5 19
* Clostridium bartlettii DSM 16795 4 17
* Clostridium beijerincki NCIMB 8052 5 38
* Clostridium bolteae ATCC BAA-613 1 7
Clostridium botulinum A str. ATCC 19397 3 19
* Clostridium botulinum A str. ATCC 3502 3 19
Clostridium botulinum A str. Hall 3 18
Clostridium botulinum A2 str. Kyoto 3 17
Clostridium botulinum A3 str. Loch Maree 3 17
Clostridium botulinum B str. Eklund 17B 3 15
Clostridium botulinum B1 str. Okra 3 17
Clostridium botulinum Ba4 str. 657 3 17
Clostridium botulinum Bf 3 16
Clostridium botulinum C str. Eklund 1 15
Clostridium botulinum E3 str. Alaska E43 2 15
Clostridium botulinum F str. Langeland 3 18
Clostridium botulinum NCTC 2916 3 17
* Clostridium butyricum 5521 4 29
* Clostridium cellulolyticum H10 3 12
* Clostridium difficile 630 3 10
Clostridium difficile CD196 3 10
Clostridium difficile QCD-32g58 3 10
Clostridium difficile QCD-37x79 3 10
Clostridium difficile QCD-63q42 3 11
Clostridium difficile QCD-76w55 3 9
Clostridium difficile QCD-97b34 3 10
Clostridium difficile R20291 3 10
* Clostridium hiranonis DSM 13275 2 7
* Clostridium kluyveri DSM 555 3 10
* Clostridium leptum DSM 753 1 5
* Clostridium nexile DSM 1787 2 7
* Clostridium novyi NT 3 24
* Clostridium perfringens ATCC 13124 2 14
Clostridium perfringens B str. ATCC 3626 2 12
Clostridium perfringens C str. JGS1495 2 14
Clostridium perfringens CPE str. F4969 2 15
Clostridium perfringens D str. JGS1721 2 13
Clostridium perfringens E str. JGS1987 2 13
Clostridium perfringens NCTC 8239 2 14
Clostridium perfringens SM101 2 10
Clostridium perfringens str. 13 2 14
* Clostridium phytofermentans ISDg 3 25
* Clostridium scindens ATCC 35704 2 4
* Clostridium sp. L2-50 1 1
* Clostridium sp. OhILAs 2 8
* Clostridium sp. SS2/1 2 8
Clostridium sporogenes ATCC 15579 3 15
* Clostridium tetani E88 3 20
Clostridium thermocellum ATCC 27405 1 5
Clostridium thermocellum DSM 4150 1 3
Epulopiscium sp. 'N.t. morphotype B' 1 1
Finegoldia magna ATCC 29328 1 2
Peptostreptococcus micros ATCC 33270 1 1
Thermoanaerobacter ethanolicus ATCC 33223 3 5
Thermoanaerobacter italicus Ab9 2 4
* - reference regulons from this genome have been used as a template for the conservative propagation
Genomic distribution of propagated regulons
Reference regulog
AraR1 - - - - - -
5 AraR1

Clostridium acetobutylicum ATCC 824
1 AraR1

Clostridium bartlettii DSM 16795
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
AraR2 - - - -
1 AraR2

Clostridiales bacterium 1_7_47_FAA
- - -
5 AraR2

Clostridium beijerincki NCIMB 8052
- - - - - - - - - - - - - - -
1 AraR2

Clostridium cellulolyticum H10
- - - - - - - - - - - - - - - - - - - - - - - - - -
1 AraR2

Clostridium sp. SS2/1
- - - - - - - - -
NiaR - -
1 NiaR

Anaerococcus prevotii DSM 20548
- - -
1 NiaR

Clostridium acetobutylicum ATCC 824
4 NiaR

Clostridium bartlettii DSM 16795
2 NiaR

Clostridium beijerincki NCIMB 8052
-
2 NiaR

Clostridium botulinum A str. ATCC 19397
2 NiaR

Clostridium botulinum A str. ATCC 3502
2 NiaR

Clostridium botulinum A str. Hall
2 NiaR

Clostridium botulinum A2 str. Kyoto
2 NiaR

Clostridium botulinum A3 str. Loch Maree
1 NiaR

Clostridium botulinum B str. Eklund 17B
2 NiaR

Clostridium botulinum B1 str. Okra
2 NiaR

Clostridium botulinum Ba4 str. 657
2 NiaR

Clostridium botulinum Bf
- -
2 NiaR

Clostridium botulinum F str. Langeland
2 NiaR

Clostridium botulinum NCTC 2916
2 NiaR

Clostridium butyricum 5521
-
2 NiaR

Clostridium difficile 630
2 NiaR

Clostridium difficile CD196
2 NiaR

Clostridium difficile QCD-32g58
2 NiaR

Clostridium difficile QCD-37x79
2 NiaR

Clostridium difficile QCD-63q42
2 NiaR

Clostridium difficile QCD-76w55
2 NiaR

Clostridium difficile QCD-97b34
2 NiaR

Clostridium difficile R20291
-
2 NiaR

Clostridium kluyveri DSM 555
-
1 NiaR

Clostridium nexile DSM 1787
2 NiaR

Clostridium novyi NT
- - - - - - - - -
2 NiaR

Clostridium phytofermentans ISDg
1 NiaR

Clostridium scindens ATCC 35704
1 NiaR

Clostridium sp. L2-50
1 NiaR

Clostridium sp. OhILAs
-
2 NiaR

Clostridium sporogenes ATCC 15579
2 NiaR

Clostridium tetani E88
- - - - -
1 NiaR

Thermoanaerobacter ethanolicus ATCC 33223
1 NiaR

Thermoanaerobacter italicus Ab9
Rex
6 Rex

Alkaliphilus metalliredigenes QYMF
3 Rex

Anaerococcus hydrogenalis DSM 7454
3 Rex

Anaerococcus prevotii DSM 20548
2 Rex

Blautia hansenii DSM 20583
9 Rex

Clostridiales bacterium 1_7_47_FAA
-
5 Rex

Clostridium acetobutylicum ATCC 824
8 Rex

Clostridium bartlettii DSM 16795
15 Rex

Clostridium beijerincki NCIMB 8052
7 Rex

Clostridium bolteae ATCC BAA-613
12 Rex

Clostridium botulinum A str. ATCC 19397
12 Rex

Clostridium botulinum A str. ATCC 3502
11 Rex

Clostridium botulinum A str. Hall
10 Rex

Clostridium botulinum A2 str. Kyoto
10 Rex

Clostridium botulinum A3 str. Loch Maree
7 Rex

Clostridium botulinum B str. Eklund 17B
10 Rex

Clostridium botulinum B1 str. Okra
10 Rex

Clostridium botulinum Ba4 str. 657
9 Rex

Clostridium botulinum Bf
12 Rex

Clostridium botulinum C str. Eklund
9 Rex

Clostridium botulinum E3 str. Alaska E43
11 Rex

Clostridium botulinum F str. Langeland
10 Rex

Clostridium botulinum NCTC 2916
17 Rex

Clostridium butyricum 5521
8 Rex

Clostridium cellulolyticum H10
5 Rex

Clostridium difficile 630
5 Rex

Clostridium difficile CD196
5 Rex

Clostridium difficile QCD-32g58
5 Rex

Clostridium difficile QCD-37x79
5 Rex

Clostridium difficile QCD-63q42
4 Rex

Clostridium difficile QCD-76w55
5 Rex

Clostridium difficile QCD-97b34
5 Rex

Clostridium difficile R20291
3 Rex

Clostridium hiranonis DSM 13275
4 Rex

Clostridium kluyveri DSM 555
4 Rex

Clostridium leptum DSM 753
4 Rex

Clostridium nexile DSM 1787
17 Rex

Clostridium novyi NT
10 Rex

Clostridium perfringens ATCC 13124
9 Rex

Clostridium perfringens B str. ATCC 3626
10 Rex

Clostridium perfringens C str. JGS1495
10 Rex

Clostridium perfringens CPE str. F4969
9 Rex

Clostridium perfringens D str. JGS1721
9 Rex

Clostridium perfringens E str. JGS1987
10 Rex

Clostridium perfringens NCTC 8239
9 Rex

Clostridium perfringens SM101
10 Rex

Clostridium perfringens str. 13
12 Rex

Clostridium phytofermentans ISDg
2 Rex

Clostridium scindens ATCC 35704
-
6 Rex

Clostridium sp. OhILAs
7 Rex

Clostridium sp. SS2/1
9 Rex

Clostridium sporogenes ATCC 15579
11 Rex

Clostridium tetani E88
4 Rex

Clostridium thermocellum ATCC 27405
2 Rex

Clostridium thermocellum DSM 4150
1 Rex

Epulopiscium sp. 'N.t. morphotype B'
2 Rex

Finegoldia magna ATCC 29328
1 Rex

Peptostreptococcus micros ATCC 33270
2 Rex

Thermoanaerobacter ethanolicus ATCC 33223
2 Rex

Thermoanaerobacter italicus Ab9
XylR1 - - - - - -
4 XylR1

Clostridium acetobutylicum ATCC 824
-
7 XylR1

Clostridium beijerincki NCIMB 8052
- - - - - - - - - - - - - -
3 XylR1

Clostridium butyricum 5521
1 XylR1

Clostridium cellulolyticum H10
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
XylR2 - - - - - - - - - - - - - - - - - - - - - - - - -
3 XylR2

Clostridium difficile 630
3 XylR2

Clostridium difficile CD196
3 XylR2

Clostridium difficile QCD-32g58
3 XylR2

Clostridium difficile QCD-37x79
3 XylR2

Clostridium difficile QCD-63q42
3 XylR2

Clostridium difficile QCD-76w55
3 XylR2

Clostridium difficile QCD-97b34
3 XylR2

Clostridium difficile R20291
- - - - - - - - - - - - - -
5 XylR2

Clostridium phytofermentans ISDg
- - - - - - - - - - -
1 XylR2

Thermoanaerobacter ethanolicus ATCC 33223
-
Zur - - - - - -
3 Zur

Clostridium acetobutylicum ATCC 824
1 Zur

Clostridium bartlettii DSM 16795
4 Zur

Clostridium beijerincki NCIMB 8052
-
3 Zur

Clostridium botulinum A str. ATCC 19397
3 Zur

Clostridium botulinum A str. ATCC 3502
3 Zur

Clostridium botulinum A str. Hall
3 Zur

Clostridium botulinum A2 str. Kyoto
3 Zur

Clostridium botulinum A3 str. Loch Maree
2 Zur

Clostridium botulinum B str. Eklund 17B
3 Zur

Clostridium botulinum B1 str. Okra
3 Zur

Clostridium botulinum Ba4 str. 657
3 Zur

Clostridium botulinum Bf
-
2 Zur

Clostridium botulinum E3 str. Alaska E43
3 Zur

Clostridium botulinum F str. Langeland
3 Zur

Clostridium botulinum NCTC 2916
3 Zur

Clostridium butyricum 5521
- - - - - - - - -
1 Zur

Clostridium hiranonis DSM 13275
4 Zur

Clostridium kluyveri DSM 555
- -
1 Zur

Clostridium novyi NT
3 Zur

Clostridium perfringens ATCC 13124
3 Zur

Clostridium perfringens B str. ATCC 3626
3 Zur

Clostridium perfringens C str. JGS1495
3 Zur

Clostridium perfringens CPE str. F4969
3 Zur

Clostridium perfringens D str. JGS1721
3 Zur

Clostridium perfringens E str. JGS1987
2 Zur

Clostridium perfringens NCTC 8239
1 Zur

Clostridium perfringens SM101
3 Zur

Clostridium perfringens str. 13
- - - - -
3 Zur

Clostridium sporogenes ATCC 15579
3 Zur

Clostridium tetani E88
- - - - - - -
-- Legend --
5 Orthologous regulator is detected and five members of regulon are predicted in a target genome
- Orthologous regulator is detected in a target genome but no potential members of regulon where identified
3 Three potential members of regulon were found, but orthologous regulator could not be detected in a target genome.
3 Neither orthologous regulator no potential members of regulon were found in a target genome