Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Orthologous regulated operons containing Rfer_3130 gene

Properties
Regulog: UxuR2 - Comamonadaceae
Regulator type: Transcription factor
Regulator family: GntR/Others
Regulation mode:
Biological process: Glucuronate utilization; Galacturonate utilization
Effector:
Phylum: Proteobacteria/Beta
Built upon 24 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Variovorax paradoxus S110
Position: -157
Score: 4.6616
Sequence: GATCTGGTCATGCCAGTTT
Position: -42
Score: 4.69657
Sequence: AAAGTGGCCTCGCCAAATT
Position: -28
Score: 5.05008
Sequence: AAATTGGTAAGGCCAAAAG
Locus tag: Vapar_5317
Name: null
Funciton: amidohydrolase 2
Locus tag: Vapar_5318
Name: Rfer_3129
Funciton: ABC-type sugar transport system, ATP-binding protein (EC 3.6.3.17)
Locus tag: Vapar_5319
Name: Rfer_3130
Funciton: Possible fucose ABC transporter, permease component
Locus tag: Vapar_5320
Name: Rfer_3131
Funciton: Possible fucose ABC transporter, substrate-binding component
Locus tag: Vapar_5321
Name: Rfer_3134
Funciton: L-fuconate dehydratase (EC 4.2.1.68)
Locus tag: Vapar_5322
Name: Rfer_3136
Funciton: SDR dehydrogenase clustered with L-fuconate utilization genes
Locus tag: Vapar_5323
Name: Rfer_3138
Funciton: Possible alternative L-fucose mutarotase
Vapar_5317-Rfer_3129-Rfer_3130-Rfer_3131-Rfer_3134-Rfer_3136-Rfer_3138 -157 4.7 GATCTGGTCATGCCAGTTT Vapar_5317
-42 4.7 AAAGTGGCCTCGCCAAATT
-28 5.1 AAATTGGTAAGGCCAAAAG