Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Orthologous regulated operons containing plyC1 gene

Properties
Regulog: HTCS_Rgu-1 - Bacteroidaceae
Regulator type: Transcription factor
Regulator family: [Other]
Regulation mode: activator
Biological process: Rhamnogalacturonides utilization
Effector: Rhamogalacturonate oligosaccharides; Galacturonate oligosaccharides
Phylum: Bacteroidetes
Built upon 26 sites [see more]
Orthologous operons
Operon Position Score Sequence Locus Tag of the First Gene
Bacteroides ovatus ATCC 8483
Position: -128
Score: 9.53095
Sequence: CAAAAAATACGA-(9)-CAAATATTGCAC
Locus tag: BACOVA_04911
Name: susC_Rgu-1
Funciton: TonB-dependent outer membrane transporter of rhamnogalacturonan oligosaccharides
Locus tag: BACOVA_04910
Name: susD_Rgu-1
Funciton: Outer membrane polysaccharide binding protein for rhamnogalacturonan oligomers
Locus tag: BACOVA_04909
Name: BT4112
Funciton: Predicted pectin lyase
Locus tag: BACOVA_04908
Name: pemC
Funciton: Pectinesterase (EC 3.1.1.11)
Locus tag: BACOVA_04907
Name: plyC1
Funciton: Pectate lyase C
Locus tag: BACOVA_04906
Name: plyC1
Funciton: Pectate lyase C
Locus tag: BACOVA_04905
Name: plyC1
Funciton: Pectate lyase C
susC_Rgu-1-susD_Rgu-1-BT4112-pemC-plyC1-plyC1-plyC1 -128 9.5 CAAAAAATACGA-(9)-CAAATATTGCAC BACOVA_04911
Bacteroides thetaiotaomicron VPI-5482
Position: -119
Score: 9.8102
Sequence: CAAAAAATACAA-(9)-CAAATATTGCAC
Locus tag: BT4116
Name: plyC1
Funciton: Pectate lyase C
Locus tag: BT4115
Name: plyC1
Funciton: Pectate lyase C
plyC1-plyC1 -119 9.8 CAAAAAATACAA-(9)-CAAATATTGCAC BT4116