Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulons of Polaromonas naphthalenivorans CJ2

Allows to visualize regulome content in the context of metabolic pathways
Type Regulator Effector Pathway Operons Sites
TF Aave_3430 2 2
TF CadR-PbrR Lead ion, (Pb2+); Cadmium, ion (Cd2+) Lead resistance; Cadmium resistance 1 1
TF CueR Copper ion, (Cu+) Copper resistance 2 2
TF Daci_0595 Metabolite transport 1 1
TF FadP Fatty acid degradation 4 4
TF GabR Gamma-aminobutyric acid Gamma-aminobutyrate utilization 1 1
TF GabR2 Gamma-aminobutyric acid Gamma-aminobutyrate utilization 1 1
TF GguR Glucarate utilization; Galactarate utilization; Galacturonate utilization; Glucuronate utilization 2 2
TF GntR Gluconate Gluconate utilization 2 3
TF GudR Glucarate utilization 1 1
TF HexR 2-keto-3-deoxy-6-phosphogluconate Central carbohydrate metabolism 3 3
TF HrcA Heat shock Heat shock response 2 2
TF IscR Iron-sulfur cluster redox state Iron-sulfur cluster biogenesis 1 1
TF LexA DNA damage SOS response 4 5
TF LiuR Branched-chain amino acid degradation 5 10
TF ModE3 Tungsten Tungsten homeostasis 2 2
TF NmlR Diamide Carbonyl stress response 1 1
TF NorR Nitric oxide Nitrosative stress response 2 2
TF NrdR Deoxyribonucleotides Deoxyribonucleotide biosynthesis 1 2
TF NrtR Adenosine diphosphate ribose NAD biosynthesis 2 4
TF NsrR Nitric oxide Nitrosative stress response 5 6
TF NtrC Phosphorylated NtrB, signal histidine kinase Nitrogen assimilation 3 5
TF SdhR Tricarboxylic acid cycle 3 3
TF UxuR2 Glucuronate utilization; Galacturonate utilization 2 8
TF VanR Vanillate Vanillate utilization 1 2
TF YdcR 1 1
TF YrdX 1 4
TF Zur Zinc ion, (Zn2+) Zinc homeostasis 2 4
RNA SAH_riboswitch S-adenosylhomocysteine Methionine metabolism 2 2
RNA TPP Thiamine pyrophosphate Thiamine biosynthesis 1 1
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