Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Collections of regulogs classified by taxonomic group

Each taxonomy collection organizes all reconstructed regulogs for a given set of taxonomically related microbial genomes. The taxonomy collections represent results of large-scale reconstruction of regulon operated by either transcription factors or RNA regulatory elements. The taxonomical collections of regulons are valuable for modeling the evolution of transcriptional regulatory networks and could be used as a framework for interpretation of high-throughput gene expression data.

Reconstructed Studied
Phylum/class Taxonomic group TF regulogs (regulons) RNA regulogs (regulons) Total regulogs (regulons) Genomes
Actinobacteria Bifidobacteriaceae 68 (299) 2 (18) 70 (317) 10
Actinobacteria Corynebacteriaceae 59 (262) 13 (56) 72 (318) 8
Actinobacteria Frankineae/Propionibacterineae/Pseudonocardiaceae 29 (123) 0 (0) 29 (123) 9
Actinobacteria Micrococcineae 40 (220) 0 (0) 40 (220) 14
Actinobacteria Mycobacteriaceae 30 (154) 12 (80) 42 (234) 9
Actinobacteria Nocardiaceae 35 (114) 0 (0) 35 (114) 4
Actinobacteria Streptomycetaceae 36 (120) 3 (8) 39 (128) 4
Bacteroidetes Bacteroidaceae 38 (223) 2 (22) 40 (245) 11
Chlamydiae Chlamydiales 4 (21) 0 (0) 4 (21) 7
Chlorobi Chlorobiales 5 (46) 6 (45) 11 (91) 11
Chloroflexi Chloroflexi 30 (107) 17 (65) 47 (172) 5
Cyanobacteria Cyanobacteria 19 (182) 11 (64) 30 (246) 14
Deinococcus-Thermus Deinococcus-Thermus 10 (29) 13 (44) 23 (73) 5
Firmicutes Bacillales 154 (901) 39 (358) 193 (1259) 11
Firmicutes Clostridia-1 33 (160) 0 (0) 33 (160) 8
Firmicutes Clostridia-2 19 (40) 1 (3) 20 (43) 3
Firmicutes Clostridia-3 19 (190) 2 (28) 21 (218) 14
Firmicutes Clostridiaceae 0 (0) 40 (566) 40 (566) 20
Firmicutes Enterococcaceae 15 (24) 0 (0) 15 (24) 2
Firmicutes Lactobacillaceae 82 (485) 39 (409) 121 (894) 15
Firmicutes Listeriaceae 25 (94) 0 (0) 25 (94) 4
Firmicutes Staphylococcaceae 52 (281) 29 (194) 81 (475) 7
Firmicutes Streptococcaceae 70 (595) 29 (330) 99 (925) 15
Firmicutes Thermoanaerobacterales 16 (71) 3 (19) 19 (90) 7
Proteobacteria/alpha Caulobacterales 33 (100) 8 (26) 41 (126) 4
Proteobacteria/alpha Rhizobiales 97 (539) 12 (124) 109 (663) 15
Proteobacteria/alpha Rhodobacterales 76 (386) 13 (115) 89 (501) 15
Proteobacteria/alpha Rhodospirillales 40 (154) 3 (14) 43 (168) 9
Proteobacteria/alpha Sphingomonadales 28 (108) 2 (7) 30 (115) 7
Proteobacteria/beta Alcaligenaceae 25 (60) 0 (0) 25 (60) 3
Proteobacteria/beta Burkholderia 75 (375) 9 (67) 84 (442) 8
Proteobacteria/beta Comamonadaceae 72 (316) 4 (26) 76 (342) 11
Proteobacteria/beta Ralstonia 69 (277) 10 (46) 79 (323) 6
Proteobacteria/beta Various betaproteobacteria 47 (158) 4 (24) 51 (182) 12
Proteobacteria/delta Desulfovibrionales 101 (428) 9 (43) 110 (471) 10
Proteobacteria/delta Desulfuromonadales 19 (111) 3 (18) 22 (129) 9
Proteobacteria/gamma Alteromonadales 50 (231) 3 (13) 53 (244) 9
Proteobacteria/gamma Enterobacteriales 127 (812) 18 (147) 145 (959) 12
Proteobacteria/gamma Moraxellaceae 29 (58) 4 (8) 33 (66) 4
Proteobacteria/gamma Oceanospirillales/Alteromonadales 72 (247) 3 (16) 75 (263) 12
Proteobacteria/gamma Pasteurellales 31 (181) 11 (82) 42 (263) 9
Proteobacteria/gamma Pseudomonadaceae 71 (338) 9 (58) 80 (396) 8
Proteobacteria/gamma Psychromonadaceae/Aeromonadales 56 (194) 3 (16) 59 (210) 6
Proteobacteria/gamma Shewanellaceae 90 (911) 15 (214) 105 (1125) 16
Proteobacteria/gamma Vibrionales 70 (444) 17 (140) 87 (584) 10
Proteobacteria/gamma Xanthomonadales 42 (106) 4 (10) 46 (116) 4
Thermotogae Thermotogales 34 (245) 13 (74) 47 (319) 11