Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Collection of regulogs for PdxR transcription factor

General statistics
Genomes 243
TF regulogs 40
TF regulons 116
TF binding sites 190

Transcription factor PdxR from the GntR protein family activates pyridoxal 5'-phosphate biosynthesis genes in wide range of bacteria. Originally PdxR was discovered in Corynebacterium glutamicum [PMID 12948641, 20847010]. Comparative genomics analysis identified PdxR orthologs in both gram-positive and gram-negative bacteria. Pyridoxal 5'-phosphate is served as effector molecule for PdxR. Main target of PdxR is pyridoxal 5'-phosphate synthase.'), (1,304,'BioQ','Collection: BioQ','Transcription factor BioQ from the TetR protein family repress biotin biosynthesis and transport genes [22178235]. BioQ was found in Corynebacteriaceae and have a palindromic DNA-binding motif.

Phylum Regulog TF regulons (studied genomes) TFBSs Logo
Actinobacteria PdxR - Corynebacteriaceae 3 (8) 3
Actinobacteria PdxR - Frankineae/Propionibacterineae/Pseudonocardiaceae 1 (9) 1
Actinobacteria PdxR2 - Frankineae/Propionibacterineae/Pseudonocardiaceae 5 (9) 7
Actinobacteria PdxR3 - Frankineae/Propionibacterineae/Pseudonocardiaceae 3 (9) 3
Actinobacteria PdxR3 - Micrococcineae 7 (14) 7
Actinobacteria PdxR - Micrococcineae 3 (14) 3
Actinobacteria PdxR2 - Micrococcineae 2 (14) 4
Actinobacteria PdxR2 - Mycobacteriaceae 1 (9) 1
Actinobacteria PdxR3 - Mycobacteriaceae 5 (9) 6
Actinobacteria PdxR2 - Nocardiaceae 4 (4) 4
Actinobacteria PdxR3 - Nocardiaceae 4 (4) 16
Actinobacteria PdxR3 - Streptomycetaceae 4 (4) 12
Deinococcus-Thermus PdxR2 - Deinococcus-Thermus 1 (5) 1
Firmicutes PdxR - Bacillales 2 (11) 2
Firmicutes PdxR - Clostridia-3 14 (14) 21
Firmicutes PdxR - Enterococcaceae 2 (2) 5
Firmicutes PdxR - Lactobacillaceae 2 (15) 4
Firmicutes PdxR - Listeriaceae 4 (4) 8
Firmicutes PdxR - Staphylococcaceae 7 (7) 7
Firmicutes PdxR - Streptococcaceae 7 (15) 14
Firmicutes PdxR - Thermoanaerobacterales 2 (7) 4
Proteobacteria/Alpha PdxR3 - Caulobacterales 1 (4) 1
Proteobacteria/Alpha PdxR - Rhizobiales 2 (15) 3
Proteobacteria/Alpha PdxR2 - Rhizobiales 1 (15) 1
Proteobacteria/Alpha PdxR2 - Rhodobacterales 2 (15) 3
Proteobacteria/Alpha PdxR3 - Rhodobacterales 1 (15) 1
Proteobacteria/Alpha PdxR - Rhodospirillales 1 (9) 2
Proteobacteria/Alpha PdxR2 - Sphingomonadales 1 (7) 1
Proteobacteria/Beta PdxR - Alcaligenaceae 2 (3) 2
Proteobacteria/Beta PdxR2 - Alcaligenaceae 2 (3) 3
Proteobacteria/Beta PdxR - Comamonadaceae 2 (11) 2
Proteobacteria/Beta PdxR3 - Comamonadaceae 1 (11) 4
Proteobacteria/Beta PdxR2 - Ralstonia 1 (6) 2
Proteobacteria/Beta PdxR - Various betaproteobacteria 1 (12) 1
Proteobacteria/Gamma PdxR - Enterobacteriales 1 (12) 2
Proteobacteria/Gamma PdxR2 - Enterobacteriales 5 (12) 18
Proteobacteria/Gamma PdxR3 - Enterobacteriales 3 (12) 3
Proteobacteria/Gamma PdxR - Pasteurellales 3 (9) 3
Proteobacteria/Gamma PdxR - Pseudomonadaceae 2 (8) 3
Proteobacteria/gamma PdxR2 - Xanthomonadales 1 (4) 2