Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Collection of regulogs in Desulfovibrionales taxonomic group

General statistics
Genomes 10
TF regulogs 101
TF regulons 428
TF binding sites 2086
RNA regulogs 9
RNA regulons 43
RNA sites 72

This collection involves all regulons that were tentatively predicted by applying integrative comparative genomic approach to a single taxonomic group of closely-related genomes. To infer the regulons operated by transcription factors (TFs), we combined the identification of TF binding sites and cross-genome comparison of regulons with the analysis of the genomic and functional context of candidate target genes. To infer the regulons operated by regulatory RNAs such as riboswitches, we identified candidate RNA regulatory elements using HMM profiles and further analyzed their genomic and functional context.

Studied genomes and reconstructed regulon statistics
TF RNA Total
Genomes Regulons Sites Regulons Sites Regulons Sites
Desulfohalobium retbaense DSM 5692 35 104 3 5 38 109
Desulfomicrobium baculatum DSM 4028 47 205 4 7 51 212
Desulfovibrio desulfuricans G20 55 326 6 10 61 336
Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 27 158 6 11 33 169
Desulfovibrio magneticus RS-1 44 208 5 7 49 215
Desulfovibrio piger ATCC 29098 23 101 4 8 27 109
Desulfovibrio salexigens DSM 2638 52 276 4 7 56 283
Desulfovibrio vulgaris Hildenborough 71 348 6 10 77 358
Desulfovibrio vulgaris str. Miyazaki F 63 308 5 7 68 315
Lawsonia intracellularis PHE/MN1-00 11 52 0 0 11 52
Genomic distribution of regulons
Family Type Regulator Function
ArsR TF ArsR
2 ArsR

Desulfovibrio vulgaris Hildenborough
1 ArsR

Desulfovibrio vulgaris str. Miyazaki F
3 ArsR

Desulfovibrio desulfuricans G20
2 ArsR

Desulfovibrio piger ATCC 29098
3 ArsR

Desulfovibrio salexigens DSM 2638
3 ArsR

Desulfovibrio magneticus RS-1
2 ArsR

Desulfomicrobium baculatum DSM 4028
2 ArsR

Desulfohalobium retbaense DSM 5692
Arsenic resistance
TF ArsR2
1 ArsR2

Desulfovibrio desulfuricans G20
1 ArsR2

Desulfovibrio salexigens DSM 2638
1 ArsR2

Desulfovibrio magneticus RS-1
1 ArsR2

Desulfomicrobium baculatum DSM 4028
Arsenic resistance
TF ArsR3
2 ArsR3

Desulfovibrio vulgaris str. Miyazaki F
2 ArsR3

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Arsenic resistance
TF DESPIG_02495
1 DESPIG_02495

Desulfovibrio piger ATCC 29098
TF DMR_39480
2 DMR_39480

Desulfovibrio magneticus RS-1
TF DMR_45340
2 DMR_45340

Desulfovibrio magneticus RS-1
TF Dbac_0377
1 Dbac_0377

Desulfomicrobium baculatum DSM 4028
TF Dbac_1936
1 Dbac_1936

Desulfomicrobium baculatum DSM 4028
TF Ddes_1264
1 Ddes_1264

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Heavy metal resistance
TF SahR
4 SahR

Desulfovibrio vulgaris Hildenborough
3 SahR

Desulfovibrio vulgaris str. Miyazaki F
5 SahR

Desulfovibrio desulfuricans G20
3 SahR

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
3 SahR

Desulfovibrio piger ATCC 29098
3 SahR

Desulfovibrio salexigens DSM 2638
1 SahR

Desulfovibrio magneticus RS-1
1 SahR

Desulfomicrobium baculatum DSM 4028
2 SahR

Desulfohalobium retbaense DSM 5692
Methionine metabolism
TF SmtB
1 SmtB

Desulfovibrio vulgaris Hildenborough
1 SmtB

Desulfovibrio vulgaris str. Miyazaki F
1 SmtB

Desulfovibrio desulfuricans G20
1 SmtB

Desulfovibrio salexigens DSM 2638
1 SmtB

Desulfomicrobium baculatum DSM 4028
1 SmtB

Desulfohalobium retbaense DSM 5692
Heavy metal resistance
BirA TF BirA
2 BirA

Desulfovibrio vulgaris Hildenborough
2 BirA

Desulfovibrio vulgaris str. Miyazaki F
2 BirA

Desulfovibrio desulfuricans G20
Biotin biosynthesis
CRP TF CooA
1 CooA

Desulfovibrio vulgaris Hildenborough
1 CooA

Desulfovibrio vulgaris str. Miyazaki F
1 CooA

Desulfovibrio desulfuricans G20
1 CooA

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
1 CooA

Desulfovibrio salexigens DSM 2638
1 CooA

Desulfovibrio magneticus RS-1
1 CooA

Desulfomicrobium baculatum DSM 4028
1 CooA

Desulfohalobium retbaense DSM 5692
Carbon monoxide utilization
TF DVU0379
1 DVU0379

Desulfovibrio vulgaris Hildenborough
1 DVU0379

Desulfovibrio desulfuricans G20
1 DVU0379

Desulfovibrio salexigens DSM 2638
Uranium reduction
TF DVU3111
3 DVU3111

Desulfovibrio vulgaris Hildenborough
Alkaline stress response
TF Dde_1200
1 Dde_1200

Desulfovibrio desulfuricans G20
1 Dde_1200

Desulfovibrio salexigens DSM 2638
TF Ddes_0528, DESPIG_03026
2 Ddes_0528, DESPIG_03026

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
1 Ddes_0528, DESPIG_03026

Desulfovibrio piger ATCC 29098
Nitrosative stress response
TF Ddes_1411/Ddes_2092
6 Ddes_1411/Ddes_2092

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
TF Ddes_1827
1 Ddes_1827

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Nitrosative stress response
TF Desal_0494
2 Desal_0494

Desulfovibrio salexigens DSM 2638
TF Desal_2066
2 Desal_2066

Desulfovibrio salexigens DSM 2638
2 Desal_2066

Desulfovibrio magneticus RS-1
2 Desal_2066

Desulfohalobium retbaense DSM 5692
TF DvMF_1708
1 DvMF_1708

Desulfovibrio vulgaris str. Miyazaki F
1 DvMF_1708

Desulfovibrio piger ATCC 29098
1 DvMF_1708

Desulfovibrio magneticus RS-1
TF HcpR
3 HcpR

Desulfovibrio vulgaris Hildenborough
2 HcpR

Desulfovibrio vulgaris str. Miyazaki F
4 HcpR

Desulfovibrio desulfuricans G20
4 HcpR

Desulfovibrio salexigens DSM 2638
4 HcpR

Desulfovibrio magneticus RS-1
4 HcpR

Desulfomicrobium baculatum DSM 4028
3 HcpR

Desulfohalobium retbaense DSM 5692
Nitrosative stress response
DeoR TF GlpR
1 GlpR

Desulfovibrio vulgaris Hildenborough
1 GlpR

Desulfovibrio vulgaris str. Miyazaki F
1 GlpR

Desulfovibrio desulfuricans G20
1 GlpR

Desulfovibrio magneticus RS-1
Glycerol utilization
FUR TF Fur
13 Fur

Desulfovibrio vulgaris Hildenborough
10 Fur

Desulfovibrio vulgaris str. Miyazaki F
21 Fur

Desulfovibrio desulfuricans G20
11 Fur

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
11 Fur

Desulfovibrio piger ATCC 29098
20 Fur

Desulfovibrio salexigens DSM 2638
12 Fur

Desulfovibrio magneticus RS-1
5 Fur

Lawsonia intracellularis PHE/MN1-00
1 Fur

Desulfomicrobium baculatum DSM 4028
1 Fur

Desulfohalobium retbaense DSM 5692
Iron homeostasis
TF PerR
4 PerR

Desulfovibrio vulgaris Hildenborough
3 PerR

Desulfovibrio vulgaris str. Miyazaki F
4 PerR

Desulfovibrio desulfuricans G20
4 PerR

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
4 PerR

Desulfovibrio piger ATCC 29098
3 PerR

Desulfovibrio salexigens DSM 2638
4 PerR

Desulfomicrobium baculatum DSM 4028
3 PerR

Desulfohalobium retbaense DSM 5692
Peroxide stress response
TF Zur
1 Zur

Desulfovibrio vulgaris Hildenborough
1 Zur

Desulfovibrio vulgaris str. Miyazaki F
1 Zur

Desulfovibrio desulfuricans G20
1 Zur

Desulfovibrio salexigens DSM 2638
1 Zur

Desulfovibrio magneticus RS-1
1 Zur

Desulfomicrobium baculatum DSM 4028
Zinc homeostasis
Fis TF DVU0110
1 DVU0110

Desulfovibrio vulgaris Hildenborough
1 DVU0110

Desulfovibrio vulgaris str. Miyazaki F
1 DVU0110

Desulfovibrio piger ATCC 29098
2 DVU0110

Desulfovibrio magneticus RS-1
TF DVU0118
1 DVU0118

Desulfovibrio vulgaris Hildenborough
1 DVU0118

Desulfovibrio vulgaris str. Miyazaki F
TF DVU0151
1 DVU0151

Desulfovibrio vulgaris Hildenborough
1 DVU0151

Desulfovibrio vulgaris str. Miyazaki F
1 DVU0151

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
1 DVU0151

Desulfovibrio piger ATCC 29098
1 DVU0151

Desulfovibrio magneticus RS-1
Metabolite transport
TF DVU0539/DVU0946
4 DVU0539/DVU0946

Desulfovibrio vulgaris Hildenborough
4 DVU0539/DVU0946

Desulfovibrio vulgaris str. Miyazaki F
1 DVU0539/DVU0946

Desulfovibrio desulfuricans G20
1 DVU0539/DVU0946

Desulfovibrio salexigens DSM 2638
3 DVU0539/DVU0946

Desulfovibrio magneticus RS-1
1 DVU0539/DVU0946

Desulfomicrobium baculatum DSM 4028
4 DVU0539/DVU0946

Desulfohalobium retbaense DSM 5692
TF DVU0569
1 DVU0569

Desulfovibrio vulgaris Hildenborough
1 DVU0569

Desulfovibrio vulgaris str. Miyazaki F
1 DVU0569

Desulfovibrio desulfuricans G20
1 DVU0569

Desulfovibrio salexigens DSM 2638
1 DVU0569

Desulfovibrio magneticus RS-1
1 DVU0569

Desulfomicrobium baculatum DSM 4028
1 DVU0569

Desulfohalobium retbaense DSM 5692
Amino acid metabolism
TF DVU0619
1 DVU0619

Desulfovibrio vulgaris Hildenborough
1 DVU0619

Desulfovibrio vulgaris str. Miyazaki F
1 DVU0619

Desulfovibrio salexigens DSM 2638
TF DVU0621
2 DVU0621

Desulfovibrio vulgaris Hildenborough
2 DVU0621

Desulfovibrio vulgaris str. Miyazaki F
1 DVU0621

Desulfovibrio desulfuricans G20
2 DVU0621

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
1 DVU0621

Desulfovibrio piger ATCC 29098
1 DVU0621

Desulfomicrobium baculatum DSM 4028
Nitrate and nitrite respiration
TF DVU0744
1 DVU0744

Desulfovibrio vulgaris Hildenborough
1 DVU0744

Desulfovibrio vulgaris str. Miyazaki F
1 DVU0744

Desulfovibrio desulfuricans G20
TF DVU0804
1 DVU0804

Desulfovibrio vulgaris Hildenborough
1 DVU0804

Desulfovibrio vulgaris str. Miyazaki F
1 DVU0804

Desulfovibrio desulfuricans G20
TF DVU1063
11 DVU1063

Desulfovibrio vulgaris Hildenborough
10 DVU1063

Desulfovibrio vulgaris str. Miyazaki F
8 DVU1063

Desulfovibrio desulfuricans G20
8 DVU1063

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
9 DVU1063

Desulfovibrio salexigens DSM 2638
5 DVU1063

Desulfovibrio magneticus RS-1
5 DVU1063

Lawsonia intracellularis PHE/MN1-00
4 DVU1063

Desulfomicrobium baculatum DSM 4028
1 DVU1063

Desulfohalobium retbaense DSM 5692
Motility
TF DVU1156
1 DVU1156

Desulfovibrio vulgaris Hildenborough
TF DVU1419
2 DVU1419

Desulfovibrio vulgaris Hildenborough
1 DVU1419

Desulfovibrio vulgaris str. Miyazaki F
1 DVU1419

Desulfovibrio desulfuricans G20
2 DVU1419

Desulfovibrio salexigens DSM 2638
1 DVU1419

Desulfomicrobium baculatum DSM 4028
1 DVU1419

Desulfohalobium retbaense DSM 5692
TF DVU2106
2 DVU2106

Desulfovibrio vulgaris Hildenborough
1 DVU2106

Desulfovibrio desulfuricans G20
2 DVU2106

Desulfovibrio salexigens DSM 2638
1 DVU2106

Desulfovibrio magneticus RS-1
1 DVU2106

Desulfohalobium retbaense DSM 5692
Nitrogen fixation
TF DVU2114
3 DVU2114

Desulfovibrio vulgaris Hildenborough
2 DVU2114

Desulfovibrio vulgaris str. Miyazaki F
2 DVU2114

Desulfovibrio desulfuricans G20
4 DVU2114

Desulfovibrio magneticus RS-1
1 DVU2114

Desulfohalobium retbaense DSM 5692
TF DVU2275
1 DVU2275

Desulfovibrio vulgaris Hildenborough
1 DVU2275

Desulfovibrio piger ATCC 29098
1 DVU2275

Desulfovibrio salexigens DSM 2638
Pyruvate metabolism
TF DVU2359
1 DVU2359

Desulfovibrio vulgaris Hildenborough
1 DVU2359

Desulfovibrio vulgaris str. Miyazaki F
1 DVU2359

Desulfovibrio desulfuricans G20
TF DVU2394
1 DVU2394

Desulfovibrio vulgaris Hildenborough
1 DVU2394

Desulfovibrio vulgaris str. Miyazaki F
1 DVU2394

Desulfovibrio desulfuricans G20
1 DVU2394

Desulfovibrio salexigens DSM 2638
2 DVU2394

Desulfovibrio magneticus RS-1
3 DVU2394

Desulfomicrobium baculatum DSM 4028
1 DVU2394

Desulfohalobium retbaense DSM 5692
Energy metabolism
TF DVU2827
2 DVU2827

Desulfovibrio vulgaris Hildenborough
2 DVU2827

Desulfovibrio desulfuricans G20
2 DVU2827

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
2 DVU2827

Desulfovibrio piger ATCC 29098
2 DVU2827

Desulfomicrobium baculatum DSM 4028
Pyruvate metabolism
TF DVU2894
3 DVU2894

Desulfovibrio vulgaris Hildenborough
2 DVU2894

Desulfovibrio vulgaris str. Miyazaki F
4 DVU2894

Desulfovibrio desulfuricans G20
5 DVU2894

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
2 DVU2894

Desulfovibrio piger ATCC 29098
2 DVU2894

Desulfovibrio salexigens DSM 2638
2 DVU2894

Desulfovibrio magneticus RS-1
3 DVU2894

Lawsonia intracellularis PHE/MN1-00
2 DVU2894

Desulfomicrobium baculatum DSM 4028
1 DVU2894

Desulfohalobium retbaense DSM 5692
Motility
TF DVU2934
1 DVU2934

Desulfovibrio vulgaris Hildenborough
1 DVU2934

Desulfovibrio vulgaris str. Miyazaki F
1 DVU2934

Desulfovibrio desulfuricans G20
1 DVU2934

Desulfovibrio salexigens DSM 2638
1 DVU2934

Lawsonia intracellularis PHE/MN1-00
1 DVU2934

Desulfomicrobium baculatum DSM 4028
1 DVU2934

Desulfohalobium retbaense DSM 5692
TF DVU2956
1 DVU2956

Desulfovibrio vulgaris Hildenborough
2 DVU2956

Desulfovibrio vulgaris str. Miyazaki F
1 DVU2956

Desulfovibrio magneticus RS-1
1 DVU2956

Desulfomicrobium baculatum DSM 4028
TF DVU3023
3 DVU3023

Desulfovibrio vulgaris Hildenborough
2 DVU3023

Desulfovibrio vulgaris str. Miyazaki F
1 DVU3023

Desulfovibrio desulfuricans G20
1 DVU3023

Desulfovibrio magneticus RS-1
1 DVU3023

Desulfomicrobium baculatum DSM 4028
1 DVU3023

Desulfohalobium retbaense DSM 5692
Lactate utilization
TF DVU3305
2 DVU3305

Desulfovibrio vulgaris Hildenborough
2 DVU3305

Desulfovibrio vulgaris str. Miyazaki F
1 DVU3305

Desulfovibrio salexigens DSM 2638
2 DVU3305

Desulfovibrio magneticus RS-1
2 DVU3305

Desulfomicrobium baculatum DSM 4028
1 DVU3305

Desulfohalobium retbaense DSM 5692
TF DVUA0057
7 DVUA0057

Desulfovibrio vulgaris Hildenborough
4 DVUA0057

Desulfovibrio vulgaris str. Miyazaki F
4 DVUA0057

Desulfovibrio desulfuricans G20
1 DVUA0057

Desulfovibrio salexigens DSM 2638
4 DVUA0057

Desulfomicrobium baculatum DSM 4028
Biofilm formation
TF DVUA0100
3 DVUA0100

Desulfovibrio vulgaris Hildenborough
3 DVUA0100

Desulfovibrio vulgaris str. Miyazaki F
3 DVUA0100

Desulfovibrio piger ATCC 29098
1 DVUA0100

Lawsonia intracellularis PHE/MN1-00
TF DVUA0143
2 DVUA0143

Desulfovibrio vulgaris Hildenborough
2 DVUA0143

Desulfovibrio vulgaris str. Miyazaki F
2 DVUA0143

Desulfovibrio salexigens DSM 2638
3 DVUA0143

Desulfovibrio magneticus RS-1
3 DVUA0143

Desulfomicrobium baculatum DSM 4028
Nitrogen fixation
TF KdpR
1 KdpR

Desulfovibrio vulgaris Hildenborough
1 KdpR

Desulfovibrio vulgaris str. Miyazaki F
Potassium homeostasis
TF NifA-1
9 NifA-1

Desulfovibrio vulgaris Hildenborough
11 NifA-1

Desulfovibrio vulgaris str. Miyazaki F
9 NifA-1

Desulfovibrio desulfuricans G20
10 NifA-1

Desulfovibrio salexigens DSM 2638
2 NifA-1

Desulfovibrio magneticus RS-1
6 NifA-1

Desulfomicrobium baculatum DSM 4028
4 NifA-1

Desulfohalobium retbaense DSM 5692
Nitrogen assimilation
TF OhcR
1 OhcR

Desulfovibrio vulgaris Hildenborough
1 OhcR

Desulfovibrio vulgaris str. Miyazaki F
1 OhcR

Desulfovibrio desulfuricans G20
1 OhcR

Desulfovibrio salexigens DSM 2638
1 OhcR

Desulfovibrio magneticus RS-1
1 OhcR

Desulfohalobium retbaense DSM 5692
Energy metabolism
TF PspF
1 PspF

Desulfovibrio vulgaris Hildenborough
1 PspF

Desulfovibrio vulgaris str. Miyazaki F
1 PspF

Desulfovibrio desulfuricans G20
1 PspF

Desulfovibrio magneticus RS-1
1 PspF

Desulfomicrobium baculatum DSM 4028
Phage shock response
TF ZraR
2 ZraR

Desulfovibrio vulgaris Hildenborough
2 ZraR

Desulfovibrio vulgaris str. Miyazaki F
3 ZraR

Desulfovibrio desulfuricans G20
1 ZraR

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
1 ZraR

Desulfovibrio piger ATCC 29098
1 ZraR

Desulfovibrio magneticus RS-1
2 ZraR

Lawsonia intracellularis PHE/MN1-00
Zinc homeostasis
GntR/MocR TF DVU0030
2 DVU0030

Desulfovibrio vulgaris Hildenborough
2 DVU0030

Desulfovibrio vulgaris str. Miyazaki F
2 DVU0030

Desulfovibrio desulfuricans G20
2 DVU0030

Desulfovibrio salexigens DSM 2638
1 DVU0030

Desulfovibrio magneticus RS-1
2 DVU0030

Desulfomicrobium baculatum DSM 4028
2 DVU0030

Desulfohalobium retbaense DSM 5692
Amino acid transport
TF DVU2086
1 DVU2086

Desulfovibrio vulgaris Hildenborough
TF DVU2953
1 DVU2953

Desulfovibrio vulgaris Hildenborough
1 DVU2953

Desulfomicrobium baculatum DSM 4028
Metabolite transport
TF PdxQ
1 PdxQ

Desulfovibrio vulgaris str. Miyazaki F
1 PdxQ

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Pyridoxine/pyridoxal homeostasis
GntR/Others TF DMR_17410
2 DMR_17410

Desulfovibrio magneticus RS-1
Metabolite transport
TF DVU2644
1 DVU2644

Desulfovibrio vulgaris Hildenborough
1 DVU2644

Desulfovibrio desulfuricans G20
1 DVU2644

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
2 DVU2644

Desulfovibrio piger ATCC 29098
2 DVU2644

Desulfovibrio salexigens DSM 2638
Amino acid metabolism
TF DVU2802
1 DVU2802

Desulfovibrio vulgaris Hildenborough
1 DVU2802

Desulfovibrio desulfuricans G20
1 DVU2802

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
1 DVU2802

Desulfovibrio salexigens DSM 2638
1 DVU2802

Desulfomicrobium baculatum DSM 4028
1 DVU2802

Desulfohalobium retbaense DSM 5692
TF Dbac_2821
1 Dbac_2821

Desulfomicrobium baculatum DSM 4028
TF Desal_0038
1 Desal_0038

Desulfovibrio salexigens DSM 2638
Carbohydrate metabolism
TF Desal_2919
2 Desal_2919

Desulfovibrio salexigens DSM 2638
Hypothetical ABC transporter
TF Desal_3745
2 Desal_3745

Desulfovibrio salexigens DSM 2638
Metabolite transport
TF DvMF_1479
1 DvMF_1479

Desulfovibrio vulgaris str. Miyazaki F
Amino acid transport
TF DvMF_1994
3 DvMF_1994

Desulfovibrio vulgaris str. Miyazaki F
1 DvMF_1994

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Carbohydrate metabolism
TF DvMF_2930
2 DvMF_2930

Desulfovibrio vulgaris str. Miyazaki F
TF LldR
1 LldR

Desulfovibrio vulgaris Hildenborough
1 LldR

Desulfovibrio vulgaris str. Miyazaki F
1 LldR

Desulfovibrio desulfuricans G20
1 LldR

Desulfovibrio salexigens DSM 2638
3 LldR

Desulfomicrobium baculatum DSM 4028
1 LldR

Desulfohalobium retbaense DSM 5692
Lactate utilization
TF PhnF
2 PhnF

Desulfovibrio desulfuricans G20
3 PhnF

Desulfomicrobium baculatum DSM 4028
Phosphonate utilization
HrcA TF HrcA
1 HrcA

Desulfovibrio vulgaris Hildenborough
1 HrcA

Desulfovibrio vulgaris str. Miyazaki F
1 HrcA

Desulfovibrio desulfuricans G20
2 HrcA

Desulfovibrio magneticus RS-1
1 HrcA

Desulfomicrobium baculatum DSM 4028
1 HrcA

Desulfohalobium retbaense DSM 5692
Heat shock response
HxlR TF DVU2423
2 DVU2423

Desulfovibrio vulgaris Hildenborough
2 DVU2423

Desulfovibrio vulgaris str. Miyazaki F
2 DVU2423

Desulfovibrio magneticus RS-1
2 DVU2423

Desulfomicrobium baculatum DSM 4028
1 DVU2423

Desulfohalobium retbaense DSM 5692
Nitrogen metabolism
LacI TF GalR
2 GalR

Desulfovibrio desulfuricans G20
2 GalR

Desulfovibrio salexigens DSM 2638
Galactose utilization
TF RbsR
1 RbsR

Desulfovibrio salexigens DSM 2638
Ribose utilization
LexA TF LexA
4 LexA

Desulfovibrio desulfuricans G20
SOS response
LysR TF DVU0309
2 DVU0309

Desulfovibrio vulgaris Hildenborough
2 DVU0309

Desulfovibrio desulfuricans G20
2 DVU0309

Desulfovibrio salexigens DSM 2638
2 DVU0309

Desulfohalobium retbaense DSM 5692
TF HrsM
2 HrsM

Desulfovibrio vulgaris Hildenborough
2 HrsM

Desulfovibrio vulgaris str. Miyazaki F
1 HrsM

Desulfovibrio desulfuricans G20
3 HrsM

Desulfovibrio salexigens DSM 2638
1 HrsM

Desulfovibrio magneticus RS-1
3 HrsM

Desulfomicrobium baculatum DSM 4028
1 HrsM

Desulfohalobium retbaense DSM 5692
MarR TF DVU0525
1 DVU0525

Desulfovibrio vulgaris Hildenborough
1 DVU0525

Desulfovibrio vulgaris str. Miyazaki F
1 DVU0525

Desulfovibrio salexigens DSM 2638
Multidrug resistance
MerR TF CadR-PbrR
1 CadR-PbrR

Desulfovibrio piger ATCC 29098
1 CadR-PbrR

Desulfovibrio magneticus RS-1
Lead resistance; Cadmium resistance
ModE TF ModE2
4 ModE2

Desulfovibrio vulgaris Hildenborough
6 ModE2

Desulfovibrio vulgaris str. Miyazaki F
7 ModE2

Desulfovibrio desulfuricans G20
8 ModE2

Desulfovibrio salexigens DSM 2638
6 ModE2

Desulfovibrio magneticus RS-1
6 ModE2

Desulfomicrobium baculatum DSM 4028
3 ModE2

Desulfohalobium retbaense DSM 5692
Molybdopterin biosynthesis; Molybdenum homeostasis
NikR TF NikR
2 NikR

Desulfovibrio vulgaris Hildenborough
3 NikR

Desulfovibrio vulgaris str. Miyazaki F
3 NikR

Desulfovibrio desulfuricans G20
2 NikR

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
1 NikR

Desulfovibrio piger ATCC 29098
1 NikR

Desulfovibrio salexigens DSM 2638
1 NikR

Lawsonia intracellularis PHE/MN1-00
1 NikR

Desulfomicrobium baculatum DSM 4028
Nickel homeostasis
OmpR TF PhoB
8 PhoB

Desulfovibrio vulgaris Hildenborough
8 PhoB

Desulfovibrio vulgaris str. Miyazaki F
10 PhoB

Desulfovibrio desulfuricans G20
2 PhoB

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
3 PhoB

Desulfovibrio piger ATCC 29098
8 PhoB

Desulfovibrio salexigens DSM 2638
8 PhoB

Desulfovibrio magneticus RS-1
9 PhoB

Desulfomicrobium baculatum DSM 4028
4 PhoB

Desulfohalobium retbaense DSM 5692
Phosphate metabolism
Rex TF Rex
14 Rex

Desulfovibrio vulgaris Hildenborough
11 Rex

Desulfovibrio vulgaris str. Miyazaki F
18 Rex

Desulfovibrio desulfuricans G20
8 Rex

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
6 Rex

Desulfovibrio piger ATCC 29098
12 Rex

Desulfovibrio salexigens DSM 2638
9 Rex

Desulfovibrio magneticus RS-1
1 Rex

Lawsonia intracellularis PHE/MN1-00
9 Rex

Desulfomicrobium baculatum DSM 4028
10 Rex

Desulfohalobium retbaense DSM 5692
Energy metabolism
Rrf2 TF DVU1964/DVU1967
1 DVU1964/DVU1967

Desulfovibrio vulgaris Hildenborough
1 DVU1964/DVU1967

Desulfovibrio vulgaris str. Miyazaki F
1 DVU1964/DVU1967

Desulfovibrio desulfuricans G20
2 DVU1964/DVU1967

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
2 DVU1964/DVU1967

Desulfovibrio salexigens DSM 2638
1 DVU1964/DVU1967

Desulfomicrobium baculatum DSM 4028
TF HmcR
1 HmcR

Desulfovibrio vulgaris Hildenborough
1 HmcR

Desulfovibrio vulgaris str. Miyazaki F
1 HmcR

Desulfovibrio desulfuricans G20
1 HmcR

Desulfovibrio salexigens DSM 2638
1 HmcR

Desulfomicrobium baculatum DSM 4028
1 HmcR

Desulfohalobium retbaense DSM 5692
Energy metabolism
TF TmcR
1 TmcR

Desulfovibrio vulgaris Hildenborough
1 TmcR

Desulfovibrio vulgaris str. Miyazaki F
1 TmcR

Desulfovibrio desulfuricans G20
Energy metabolism
Sigma54 TF RpoN
81 RpoN

Desulfovibrio vulgaris Hildenborough
73 RpoN

Desulfovibrio vulgaris str. Miyazaki F
66 RpoN

Desulfovibrio desulfuricans G20
45 RpoN

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
18 RpoN

Desulfovibrio piger ATCC 29098
53 RpoN

Desulfovibrio salexigens DSM 2638
45 RpoN

Desulfovibrio magneticus RS-1
19 RpoN

Lawsonia intracellularis PHE/MN1-00
57 RpoN

Desulfomicrobium baculatum DSM 4028
15 RpoN

Desulfohalobium retbaense DSM 5692
Zinc homeostasis; Nitrogen metabolism; Motility; Metabolite transport; Intercellular adhesion; Cell wall metabolism
Sigma70 TF FliA
10 FliA

Desulfovibrio vulgaris Hildenborough
11 FliA

Desulfovibrio vulgaris str. Miyazaki F
9 FliA

Desulfovibrio desulfuricans G20
6 FliA

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
5 FliA

Desulfovibrio salexigens DSM 2638
9 FliA

Desulfovibrio magneticus RS-1
3 FliA

Lawsonia intracellularis PHE/MN1-00
5 FliA

Desulfomicrobium baculatum DSM 4028
3 FliA

Desulfohalobium retbaense DSM 5692
Motility
TF RpoH
4 RpoH

Desulfovibrio vulgaris Hildenborough
3 RpoH

Desulfovibrio desulfuricans G20
2 RpoH

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
2 RpoH

Desulfovibrio piger ATCC 29098
1 RpoH

Desulfovibrio salexigens DSM 2638
3 RpoH

Desulfovibrio magneticus RS-1
1 RpoH

Lawsonia intracellularis PHE/MN1-00
2 RpoH

Desulfohalobium retbaense DSM 5692
Heat shock response
TetR TF DVU0057
1 DVU0057

Desulfovibrio vulgaris Hildenborough
1 DVU0057

Desulfovibrio vulgaris str. Miyazaki F
1 DVU0057

Desulfovibrio salexigens DSM 2638
TF DVU0436
1 DVU0436

Desulfovibrio vulgaris Hildenborough
1 DVU0436

Desulfovibrio vulgaris str. Miyazaki F
TF DVU1760
2 DVU1760

Desulfovibrio vulgaris Hildenborough
TF DVU2819
1 DVU2819

Desulfovibrio vulgaris Hildenborough
Metabolite transport
TF Dbac_0104
1 Dbac_0104

Desulfovibrio salexigens DSM 2638
2 Dbac_0104

Desulfovibrio magneticus RS-1
2 Dbac_0104

Desulfomicrobium baculatum DSM 4028
Metabolite transport
TrmB TF LysX
3 LysX

Desulfovibrio vulgaris Hildenborough
3 LysX

Desulfovibrio vulgaris str. Miyazaki F
5 LysX

Desulfovibrio desulfuricans G20
Lysine biosynthesis
TunR TF TunR
3 TunR

Desulfovibrio vulgaris Hildenborough
9 TunR

Desulfovibrio vulgaris str. Miyazaki F
3 TunR

Desulfovibrio desulfuricans G20
4 TunR

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
1 TunR

Desulfovibrio piger ATCC 29098
1 TunR

Desulfovibrio salexigens DSM 2638
7 TunR

Desulfovibrio magneticus RS-1
3 TunR

Desulfomicrobium baculatum DSM 4028
Tungsten homeostasis; Molybdenum homeostasis
TF TunR2
2 TunR2

Desulfovibrio vulgaris Hildenborough
2 TunR2

Desulfovibrio vulgaris str. Miyazaki F
5 TunR2

Desulfovibrio magneticus RS-1
1 TunR2

Desulfomicrobium baculatum DSM 4028
Molybdenum homeostasis; Metabolite transport
RF00050 RNA FMN
1 FMN

Desulfovibrio vulgaris Hildenborough
1 FMN

Desulfovibrio vulgaris str. Miyazaki F
1 FMN

Desulfovibrio desulfuricans G20
1 FMN

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
1 FMN

Desulfovibrio piger ATCC 29098
1 FMN

Desulfovibrio salexigens DSM 2638
1 FMN

Desulfovibrio magneticus RS-1
1 FMN

Desulfomicrobium baculatum DSM 4028
Riboflavin biosynthesis
RF00059 RNA TPP
1 TPP

Desulfovibrio vulgaris Hildenborough
1 TPP

Desulfovibrio vulgaris str. Miyazaki F
1 TPP

Desulfovibrio desulfuricans G20
2 TPP

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
2 TPP

Desulfovibrio piger ATCC 29098
1 TPP

Desulfovibrio salexigens DSM 2638
2 TPP

Desulfomicrobium baculatum DSM 4028
2 TPP

Desulfohalobium retbaense DSM 5692
Thiamine biosynthesis
RF00080 RNA yybP-ykoY
1 yybP-ykoY

Desulfovibrio vulgaris Hildenborough
1 yybP-ykoY

Desulfovibrio vulgaris str. Miyazaki F
1 yybP-ykoY

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
1 yybP-ykoY

Desulfovibrio piger ATCC 29098
1 yybP-ykoY

Desulfovibrio magneticus RS-1
2 yybP-ykoY

Desulfomicrobium baculatum DSM 4028
RF00162 RNA SAM
1 SAM

Desulfovibrio vulgaris Hildenborough
1 SAM

Desulfovibrio vulgaris str. Miyazaki F
1 SAM

Desulfovibrio desulfuricans G20
1 SAM

Desulfovibrio salexigens DSM 2638
Methionine biosynthesis
RF00174 RNA Cobalamin
3 Cobalamin

Desulfovibrio vulgaris Hildenborough
2 Cobalamin

Desulfovibrio vulgaris str. Miyazaki F
3 Cobalamin

Desulfovibrio desulfuricans G20
3 Cobalamin

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
3 Cobalamin

Desulfovibrio piger ATCC 29098
4 Cobalamin

Desulfovibrio salexigens DSM 2638
2 Cobalamin

Desulfovibrio magneticus RS-1
2 Cobalamin

Desulfomicrobium baculatum DSM 4028
1 Cobalamin

Desulfohalobium retbaense DSM 5692
Cobalamin biosynthesis
RF00379 RNA ydaO-yuaA
1 ydaO-yuaA

Desulfovibrio magneticus RS-1
Cell wall metabolism; Osmotic stress response
RF00504 RNA Glycine
1 Glycine

Desulfovibrio vulgaris Hildenborough
1 Glycine

Desulfovibrio desulfuricans G20
2 Glycine

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Glycine metabolism
RF01051 RNA GEMM_RNA_motif
1 GEMM_RNA_motif

Desulfovibrio desulfuricans G20
2 GEMM_RNA_motif

Desulfovibrio magneticus RS-1
2 GEMM_RNA_motif

Desulfohalobium retbaense DSM 5692
Second messenger response
RF01068 RNA mini-ykkC
1 mini-ykkC

Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774
Multidrug resistance