Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Collection of regulogs in Bacillales taxonomic group

General statistics
Genomes 11
TF regulogs 154
TF regulons 901
TF binding sites 3939
RNA regulogs 39
RNA regulons 358
RNA sites 668

This collection involves all regulons that were tentatively predicted by applying integrative comparative genomic approach to a single taxonomic group of closely-related genomes. To infer the regulons operated by transcription factors (TFs), we combined the identification of TF binding sites and cross-genome comparison of regulons with the analysis of the genomic and functional context of candidate target genes. To infer the regulons operated by regulatory RNAs such as riboswitches, we identified candidate RNA regulatory elements using HMM profiles and further analyzed their genomic and functional context.

Studied genomes and reconstructed regulon statistics
TF RNA Total
Genomes Regulons Sites Regulons Sites Regulons Sites
Anoxybacillus flavithermus WK1 47 241 31 50 78 291
Bacillus amyloliquefaciens FZB42 108 527 33 61 141 588
Bacillus cereus ATCC 14579 68 281 34 90 102 371
Bacillus clausii KSM-K16 77 279 31 53 108 332
Bacillus halodurans C-125 80 345 36 60 116 405
Bacillus licheniformis DSM 13 118 534 34 63 152 597
Bacillus pumilus SAFR-032 91 419 34 62 125 481
Bacillus subtilis subsp. subtilis str. 168 129 624 33 65 162 689
Geobacillus kaustophilus HTA426 57 222 30 50 87 272
Oceanobacillus iheyensis HTE831 65 273 32 64 97 337
Paenibacillus sp. JDR-2 61 194 30 50 91 244
Genomic distribution of regulons
Family Type Regulator Function
AraC TF AdaA
2 AdaA

Bacillus subtilis subsp. subtilis str. 168
1 AdaA

Bacillus amyloliquefaciens FZB42
1 AdaA

Bacillus licheniformis DSM 13
2 AdaA

Bacillus cereus ATCC 14579
2 AdaA

Bacillus clausii KSM-K16
2 AdaA

Paenibacillus sp. JDR-2
DNA alkylation response
TF Btr
1 Btr

Bacillus subtilis subsp. subtilis str. 168
1 Btr

Bacillus amyloliquefaciens FZB42
1 Btr

Bacillus pumilus SAFR-032
1 Btr

Bacillus licheniformis DSM 13
1 Btr

Bacillus clausii KSM-K16
Iron homeostasis
TF RhgR
1 RhgR

Bacillus subtilis subsp. subtilis str. 168
1 RhgR

Bacillus licheniformis DSM 13
1 RhgR

Paenibacillus sp. JDR-2
Rhamnogalacturonides utilization
TF RmgR
2 RmgR

Bacillus subtilis subsp. subtilis str. 168
1 RmgR

Bacillus pumilus SAFR-032
2 RmgR

Bacillus licheniformis DSM 13
1 RmgR

Bacillus halodurans C-125
1 RmgR

Bacillus clausii KSM-K16
1 RmgR

Oceanobacillus iheyensis HTE831
1 RmgR

Paenibacillus sp. JDR-2
Rhamnogalacturonides utilization
TF YbfI
1 YbfI

Bacillus subtilis subsp. subtilis str. 168
1 YbfI

Bacillus licheniformis DSM 13
1 YbfI

Bacillus clausii KSM-K16
Drug resistance
TF YisR
1 YisR

Bacillus subtilis subsp. subtilis str. 168
1 YisR

Bacillus amyloliquefaciens FZB42
1 YisR

Bacillus pumilus SAFR-032
1 YisR

Bacillus licheniformis DSM 13
1 YisR

Anoxybacillus flavithermus WK1
1 YisR

Geobacillus kaustophilus HTA426
Metabolite transport
ArgR TF ArgR
5 ArgR

Bacillus subtilis subsp. subtilis str. 168
5 ArgR

Bacillus amyloliquefaciens FZB42
4 ArgR

Bacillus pumilus SAFR-032
6 ArgR

Bacillus licheniformis DSM 13
4 ArgR

Anoxybacillus flavithermus WK1
3 ArgR

Geobacillus kaustophilus HTA426
5 ArgR

Bacillus cereus ATCC 14579
4 ArgR

Bacillus halodurans C-125
2 ArgR

Bacillus clausii KSM-K16
5 ArgR

Oceanobacillus iheyensis HTE831
2 ArgR

Paenibacillus sp. JDR-2
Arginine biosynthesis; Arginine degradation
ArsR TF ArsR
2 ArsR

Bacillus subtilis subsp. subtilis str. 168
2 ArsR

Bacillus cereus ATCC 14579
2 ArsR

Bacillus halodurans C-125
2 ArsR

Bacillus clausii KSM-K16
2 ArsR

Oceanobacillus iheyensis HTE831
Arsenic resistance
TF AseR
1 AseR

Bacillus subtilis subsp. subtilis str. 168
1 AseR

Bacillus amyloliquefaciens FZB42
1 AseR

Bacillus licheniformis DSM 13
1 AseR

Anoxybacillus flavithermus WK1
2 AseR

Geobacillus kaustophilus HTA426
1 AseR

Bacillus halodurans C-125
1 AseR

Bacillus clausii KSM-K16
1 AseR

Oceanobacillus iheyensis HTE831
Arsenic resistance
TF CzrA
2 CzrA

Bacillus subtilis subsp. subtilis str. 168
2 CzrA

Bacillus amyloliquefaciens FZB42
1 CzrA

Bacillus pumilus SAFR-032
2 CzrA

Bacillus licheniformis DSM 13
1 CzrA

Anoxybacillus flavithermus WK1
2 CzrA

Geobacillus kaustophilus HTA426
2 CzrA

Bacillus cereus ATCC 14579
1 CzrA

Bacillus clausii KSM-K16
1 CzrA

Oceanobacillus iheyensis HTE831
2 CzrA

Paenibacillus sp. JDR-2
Zinc resistance; Nickel resistance; Copper resistance; Cobalt resistance; Cadmium resistance
TF SdpR
1 SdpR

Bacillus subtilis subsp. subtilis str. 168
1 SdpR

Bacillus licheniformis DSM 13
1 SdpR

Anoxybacillus flavithermus WK1
1 SdpR

Geobacillus kaustophilus HTA426
1 SdpR

Bacillus cereus ATCC 14579
1 SdpR

Bacillus halodurans C-125
1 SdpR

Bacillus clausii KSM-K16
1 SdpR

Paenibacillus sp. JDR-2
Toxin-antitoxin system
TF YbzH
2 YbzH

Bacillus subtilis subsp. subtilis str. 168
2 YbzH

Bacillus amyloliquefaciens FZB42
2 YbzH

Bacillus licheniformis DSM 13
2 YbzH

Bacillus clausii KSM-K16
Metabolite transport
TF YczG
2 YczG

Bacillus subtilis subsp. subtilis str. 168
2 YczG

Bacillus amyloliquefaciens FZB42
2 YczG

Bacillus licheniformis DSM 13
2 YczG

Bacillus cereus ATCC 14579
Utilization of aromatic compounds
TF YdfF
2 YdfF

Bacillus subtilis subsp. subtilis str. 168
3 YdfF

Bacillus licheniformis DSM 13
2 YdfF

Bacillus halodurans C-125
3 YdfF

Bacillus clausii KSM-K16
AsnC TF YwrC
1 YwrC

Bacillus subtilis subsp. subtilis str. 168
1 YwrC

Bacillus amyloliquefaciens FZB42
1 YwrC

Bacillus pumilus SAFR-032
1 YwrC

Bacillus licheniformis DSM 13
1 YwrC

Paenibacillus sp. JDR-2
Metal homeostasis
BglG TF LicR
1 LicR

Bacillus subtilis subsp. subtilis str. 168
1 LicR

Bacillus amyloliquefaciens FZB42
1 LicR

Bacillus pumilus SAFR-032
1 LicR

Bacillus clausii KSM-K16
1 LicR

Oceanobacillus iheyensis HTE831
Beta-glucosides utilization
TF ManR
2 ManR

Bacillus subtilis subsp. subtilis str. 168
2 ManR

Bacillus amyloliquefaciens FZB42
1 ManR

Bacillus licheniformis DSM 13
Mannose utilization
TF MtlR
2 MtlR

Bacillus subtilis subsp. subtilis str. 168
2 MtlR

Bacillus amyloliquefaciens FZB42
2 MtlR

Bacillus pumilus SAFR-032
1 MtlR

Bacillus licheniformis DSM 13
2 MtlR

Anoxybacillus flavithermus WK1
2 MtlR

Geobacillus kaustophilus HTA426
1 MtlR

Bacillus halodurans C-125
1 MtlR

Oceanobacillus iheyensis HTE831
1 MtlR

Paenibacillus sp. JDR-2
Mannitol utilization
BirA TF BirA
3 BirA

Bacillus subtilis subsp. subtilis str. 168
3 BirA

Bacillus amyloliquefaciens FZB42
3 BirA

Bacillus pumilus SAFR-032
2 BirA

Bacillus licheniformis DSM 13
4 BirA

Anoxybacillus flavithermus WK1
5 BirA

Geobacillus kaustophilus HTA426
3 BirA

Bacillus cereus ATCC 14579
4 BirA

Bacillus halodurans C-125
2 BirA

Bacillus clausii KSM-K16
2 BirA

Oceanobacillus iheyensis HTE831
2 BirA

Paenibacillus sp. JDR-2
Biotin biosynthesis
CRP TF Fnr
5 Fnr

Bacillus subtilis subsp. subtilis str. 168
4 Fnr

Bacillus amyloliquefaciens FZB42
1 Fnr

Bacillus pumilus SAFR-032
7 Fnr

Bacillus licheniformis DSM 13
1 Fnr

Anoxybacillus flavithermus WK1
2 Fnr

Geobacillus kaustophilus HTA426
2 Fnr

Bacillus cereus ATCC 14579
4 Fnr

Bacillus halodurans C-125
1 Fnr

Bacillus clausii KSM-K16
1 Fnr

Oceanobacillus iheyensis HTE831
1 Fnr

Paenibacillus sp. JDR-2
Anaerobic metabolism
CcpN TF CcpN
2 CcpN

Bacillus subtilis subsp. subtilis str. 168
2 CcpN

Bacillus amyloliquefaciens FZB42
2 CcpN

Bacillus pumilus SAFR-032
2 CcpN

Bacillus licheniformis DSM 13
2 CcpN

Anoxybacillus flavithermus WK1
2 CcpN

Geobacillus kaustophilus HTA426
2 CcpN

Bacillus cereus ATCC 14579
2 CcpN

Bacillus halodurans C-125
2 CcpN

Bacillus clausii KSM-K16
2 CcpN

Oceanobacillus iheyensis HTE831
Gluconeogenesis
CitB TF CitT
1 CitT

Bacillus subtilis subsp. subtilis str. 168
1 CitT

Bacillus amyloliquefaciens FZB42
1 CitT

Bacillus pumilus SAFR-032
1 CitT

Bacillus licheniformis DSM 13
1 CitT

Bacillus cereus ATCC 14579
1 CitT

Bacillus halodurans C-125
1 CitT

Bacillus clausii KSM-K16
1 CitT

Oceanobacillus iheyensis HTE831
Citrate utilization
TF MalR
3 MalR

Bacillus subtilis subsp. subtilis str. 168
2 MalR

Bacillus amyloliquefaciens FZB42
2 MalR

Bacillus pumilus SAFR-032
2 MalR

Bacillus licheniformis DSM 13
1 MalR

Bacillus halodurans C-125
Malate utilization
CodY TF CodY
73 CodY

Bacillus subtilis subsp. subtilis str. 168
70 CodY

Bacillus amyloliquefaciens FZB42
47 CodY

Bacillus pumilus SAFR-032
59 CodY

Bacillus licheniformis DSM 13
38 CodY

Anoxybacillus flavithermus WK1
16 CodY

Geobacillus kaustophilus HTA426
35 CodY

Bacillus cereus ATCC 14579
21 CodY

Bacillus halodurans C-125
8 CodY

Bacillus clausii KSM-K16
25 CodY

Oceanobacillus iheyensis HTE831
6 CodY

Paenibacillus sp. JDR-2
Amino acid metabolism
CsoR TF CsoR
3 CsoR

Bacillus subtilis subsp. subtilis str. 168
2 CsoR

Bacillus amyloliquefaciens FZB42
2 CsoR

Bacillus pumilus SAFR-032
2 CsoR

Bacillus licheniformis DSM 13
1 CsoR

Anoxybacillus flavithermus WK1
1 CsoR

Geobacillus kaustophilus HTA426
2 CsoR

Bacillus cereus ATCC 14579
2 CsoR

Bacillus halodurans C-125
3 CsoR

Bacillus clausii KSM-K16
2 CsoR

Oceanobacillus iheyensis HTE831
3 CsoR

Paenibacillus sp. JDR-2
Copper resistance
TF YrkD
2 YrkD

Bacillus subtilis subsp. subtilis str. 168
2 YrkD

Bacillus amyloliquefaciens FZB42
2 YrkD

Bacillus pumilus SAFR-032
2 YrkD

Bacillus licheniformis DSM 13
9 YrkD

Anoxybacillus flavithermus WK1
7 YrkD

Geobacillus kaustophilus HTA426
5 YrkD

Bacillus cereus ATCC 14579
3 YrkD

Oceanobacillus iheyensis HTE831
Multidrug resistance
CtsR TF CtsR
3 CtsR

Bacillus subtilis subsp. subtilis str. 168
4 CtsR

Bacillus amyloliquefaciens FZB42
4 CtsR

Bacillus pumilus SAFR-032
5 CtsR

Bacillus licheniformis DSM 13
4 CtsR

Anoxybacillus flavithermus WK1
4 CtsR

Geobacillus kaustophilus HTA426
5 CtsR

Bacillus cereus ATCC 14579
4 CtsR

Bacillus halodurans C-125
3 CtsR

Bacillus clausii KSM-K16
3 CtsR

Oceanobacillus iheyensis HTE831
2 CtsR

Paenibacillus sp. JDR-2
Heat shock response
DeoR TF FruR
1 FruR

Bacillus subtilis subsp. subtilis str. 168
1 FruR

Bacillus amyloliquefaciens FZB42
1 FruR

Bacillus pumilus SAFR-032
1 FruR

Bacillus licheniformis DSM 13
1 FruR

Anoxybacillus flavithermus WK1
1 FruR

Geobacillus kaustophilus HTA426
1 FruR

Bacillus cereus ATCC 14579
1 FruR

Bacillus halodurans C-125
1 FruR

Bacillus clausii KSM-K16
1 FruR

Oceanobacillus iheyensis HTE831
Fructose utilization
TF GlcR
1 GlcR

Bacillus subtilis subsp. subtilis str. 168
1 GlcR

Bacillus amyloliquefaciens FZB42
1 GlcR

Bacillus licheniformis DSM 13
1 GlcR

Bacillus halodurans C-125
1 GlcR

Oceanobacillus iheyensis HTE831
TF IolR
2 IolR

Bacillus subtilis subsp. subtilis str. 168
2 IolR

Bacillus amyloliquefaciens FZB42
2 IolR

Bacillus licheniformis DSM 13
2 IolR

Bacillus clausii KSM-K16
Inositol utilization
TF RhaR
1 RhaR

Bacillus subtilis subsp. subtilis str. 168
1 RhaR

Bacillus licheniformis DSM 13
1 RhaR

Bacillus halodurans C-125
1 RhaR

Oceanobacillus iheyensis HTE831
2 RhaR

Paenibacillus sp. JDR-2
Rhamnose utilization
TF YcnK
1 YcnK

Bacillus subtilis subsp. subtilis str. 168
1 YcnK

Bacillus amyloliquefaciens FZB42
1 YcnK

Bacillus licheniformis DSM 13
Copper homeostasis
DtxR TF MntR
2 MntR

Bacillus subtilis subsp. subtilis str. 168
1 MntR

Bacillus amyloliquefaciens FZB42
2 MntR

Bacillus pumilus SAFR-032
1 MntR

Bacillus licheniformis DSM 13
1 MntR

Anoxybacillus flavithermus WK1
1 MntR

Geobacillus kaustophilus HTA426
2 MntR

Bacillus cereus ATCC 14579
2 MntR

Bacillus halodurans C-125
1 MntR

Bacillus clausii KSM-K16
1 MntR

Oceanobacillus iheyensis HTE831
1 MntR

Paenibacillus sp. JDR-2
Manganese homeostasis
FUR TF Fur
25 Fur

Bacillus subtilis subsp. subtilis str. 168
21 Fur

Bacillus amyloliquefaciens FZB42
18 Fur

Bacillus pumilus SAFR-032
21 Fur

Bacillus licheniformis DSM 13
4 Fur

Anoxybacillus flavithermus WK1
3 Fur

Geobacillus kaustophilus HTA426
16 Fur

Bacillus cereus ATCC 14579
11 Fur

Bacillus halodurans C-125
12 Fur

Bacillus clausii KSM-K16
11 Fur

Oceanobacillus iheyensis HTE831
8 Fur

Paenibacillus sp. JDR-2
Iron homeostasis
TF PerR
9 PerR

Bacillus subtilis subsp. subtilis str. 168
10 PerR

Bacillus amyloliquefaciens FZB42
6 PerR

Bacillus pumilus SAFR-032
11 PerR

Bacillus licheniformis DSM 13
8 PerR

Anoxybacillus flavithermus WK1
8 PerR

Geobacillus kaustophilus HTA426
11 PerR

Bacillus cereus ATCC 14579
6 PerR

Bacillus halodurans C-125
4 PerR

Bacillus clausii KSM-K16
10 PerR

Oceanobacillus iheyensis HTE831
6 PerR

Paenibacillus sp. JDR-2
Oxidative stress response; Peroxide stress response
TF Zur
6 Zur

Bacillus subtilis subsp. subtilis str. 168
5 Zur

Bacillus amyloliquefaciens FZB42
5 Zur

Bacillus pumilus SAFR-032
9 Zur

Bacillus licheniformis DSM 13
3 Zur

Anoxybacillus flavithermus WK1
1 Zur

Geobacillus kaustophilus HTA426
4 Zur

Bacillus cereus ATCC 14579
4 Zur

Bacillus halodurans C-125
6 Zur

Bacillus clausii KSM-K16
5 Zur

Oceanobacillus iheyensis HTE831
2 Zur

Paenibacillus sp. JDR-2
Zinc homeostasis
FapR TF FapR
5 FapR

Bacillus subtilis subsp. subtilis str. 168
5 FapR

Bacillus amyloliquefaciens FZB42
5 FapR

Bacillus pumilus SAFR-032
6 FapR

Bacillus licheniformis DSM 13
3 FapR

Anoxybacillus flavithermus WK1
3 FapR

Geobacillus kaustophilus HTA426
6 FapR

Bacillus cereus ATCC 14579
4 FapR

Bacillus halodurans C-125
3 FapR

Bacillus clausii KSM-K16
4 FapR

Oceanobacillus iheyensis HTE831
3 FapR

Paenibacillus sp. JDR-2
Fatty acid biosynthesis
Fis TF AcoR
1 AcoR

Bacillus subtilis subsp. subtilis str. 168
1 AcoR

Bacillus amyloliquefaciens FZB42
1 AcoR

Bacillus pumilus SAFR-032
1 AcoR

Bacillus licheniformis DSM 13
1 AcoR

Bacillus cereus ATCC 14579
1 AcoR

Bacillus halodurans C-125
Acetoin utilization
TF BkdR
2 BkdR

Bacillus subtilis subsp. subtilis str. 168
2 BkdR

Bacillus amyloliquefaciens FZB42
2 BkdR

Bacillus pumilus SAFR-032
2 BkdR

Bacillus licheniformis DSM 13
2 BkdR

Anoxybacillus flavithermus WK1
2 BkdR

Geobacillus kaustophilus HTA426
2 BkdR

Bacillus cereus ATCC 14579
1 BkdR

Bacillus halodurans C-125
1 BkdR

Bacillus clausii KSM-K16
2 BkdR

Oceanobacillus iheyensis HTE831
Branched-chain amino acid degradation
TF RocR
3 RocR

Bacillus subtilis subsp. subtilis str. 168
3 RocR

Bacillus amyloliquefaciens FZB42
2 RocR

Bacillus pumilus SAFR-032
2 RocR

Bacillus licheniformis DSM 13
2 RocR

Geobacillus kaustophilus HTA426
1 RocR

Bacillus cereus ATCC 14579
2 RocR

Bacillus halodurans C-125
2 RocR

Bacillus clausii KSM-K16
Arginine degradation; Ornithine degradation
GlnL TF GlnL
1 GlnL

Bacillus subtilis subsp. subtilis str. 168
1 GlnL

Bacillus amyloliquefaciens FZB42
2 GlnL

Bacillus pumilus SAFR-032
1 GlnL

Bacillus licheniformis DSM 13
2 GlnL

Bacillus cereus ATCC 14579
1 GlnL

Bacillus halodurans C-125
Aspartate utilization; Glutamine utilization
GntR/MocR TF BC3039
2 BC3039

Bacillus cereus ATCC 14579
Metabolite transport
TF BH1940
2 BH1940

Bacillus halodurans C-125
TF GabR
1 GabR

Bacillus subtilis subsp. subtilis str. 168
1 GabR

Bacillus amyloliquefaciens FZB42
1 GabR

Bacillus pumilus SAFR-032
1 GabR

Bacillus licheniformis DSM 13
Gamma-aminobutyrate utilization
TF PdxQ
2 PdxQ

Bacillus amyloliquefaciens FZB42
1 PdxQ

Geobacillus kaustophilus HTA426
Pyridoxine/pyridoxal homeostasis
TF PdxR
1 PdxR

Bacillus clausii KSM-K16
1 PdxR

Oceanobacillus iheyensis HTE831
Pyridoxine biosynthesis
TF PdxW
1 PdxW

Bacillus halodurans C-125
1 PdxW

Paenibacillus sp. JDR-2
Pyridoxine/pyridoxal homeostasis
TF YcxD
1 YcxD

Bacillus subtilis subsp. subtilis str. 168
1 YcxD

Bacillus amyloliquefaciens FZB42
1 YcxD

Bacillus pumilus SAFR-032
1 YcxD

Bacillus licheniformis DSM 13
1 YcxD

Paenibacillus sp. JDR-2
Multidrug efflux
TF YdeF
1 YdeF

Bacillus subtilis subsp. subtilis str. 168
1 YdeF

Paenibacillus sp. JDR-2
Metabolite transport
TF YdfD/YisV
4 YdfD/YisV

Bacillus subtilis subsp. subtilis str. 168
4 YdfD/YisV

Bacillus cereus ATCC 14579
2 YdfD/YisV

Bacillus halodurans C-125
2 YdfD/YisV

Bacillus clausii KSM-K16
2 YdfD/YisV

Paenibacillus sp. JDR-2
Metabolite transport
TF YhdI/YdeL
2 YhdI/YdeL

Bacillus subtilis subsp. subtilis str. 168
1 YhdI/YdeL

Bacillus amyloliquefaciens FZB42
1 YhdI/YdeL

Bacillus licheniformis DSM 13
2 YhdI/YdeL

Bacillus cereus ATCC 14579
Metabolite transport
GntR/Others TF ABC3918
1 ABC3918

Bacillus halodurans C-125
1 ABC3918

Bacillus clausii KSM-K16
1 ABC3918

Paenibacillus sp. JDR-2
TF AraR
5 AraR

Bacillus subtilis subsp. subtilis str. 168
5 AraR

Bacillus amyloliquefaciens FZB42
2 AraR

Bacillus pumilus SAFR-032
3 AraR

Bacillus licheniformis DSM 13
2 AraR

Anoxybacillus flavithermus WK1
3 AraR

Geobacillus kaustophilus HTA426
5 AraR

Bacillus halodurans C-125
2 AraR

Oceanobacillus iheyensis HTE831
3 AraR

Paenibacillus sp. JDR-2
Arabinose utilization
TF BC2903
2 BC2903

Bacillus cereus ATCC 14579
1 BC2903

Bacillus halodurans C-125
2 BC2903

Bacillus clausii KSM-K16
2 BC2903

Oceanobacillus iheyensis HTE831
1 BC2903

Paenibacillus sp. JDR-2
Multidrug resistance; Multidrug efflux
TF BH0651
1 BH0651

Bacillus pumilus SAFR-032
2 BH0651

Bacillus licheniformis DSM 13
1 BH0651

Bacillus cereus ATCC 14579
1 BH0651

Bacillus halodurans C-125
2 BH0651

Bacillus clausii KSM-K16
1 BH0651

Paenibacillus sp. JDR-2
Multidrug resistance; Multidrug efflux
TF BglR
2 BglR

Bacillus subtilis subsp. subtilis str. 168
2 BglR

Bacillus amyloliquefaciens FZB42
2 BglR

Bacillus pumilus SAFR-032
Beta-glucosides utilization
TF FrlR
4 FrlR

Bacillus subtilis subsp. subtilis str. 168
4 FrlR

Bacillus amyloliquefaciens FZB42
Fructoselysine utilization
TF GamR
2 GamR

Bacillus subtilis subsp. subtilis str. 168
3 GamR

Bacillus licheniformis DSM 13
3 GamR

Bacillus halodurans C-125
3 GamR

Bacillus clausii KSM-K16
2 GamR

Oceanobacillus iheyensis HTE831
Glucosamine utilization
TF GarR
1 GarR

Bacillus clausii KSM-K16
2 GarR

Oceanobacillus iheyensis HTE831
Galactarate utilization
TF GmuR
1 GmuR

Bacillus subtilis subsp. subtilis str. 168
1 GmuR

Bacillus amyloliquefaciens FZB42
1 GmuR

Bacillus pumilus SAFR-032
1 GmuR

Bacillus licheniformis DSM 13
1 GmuR

Geobacillus kaustophilus HTA426
1 GmuR

Bacillus halodurans C-125
Glucomannan utilization
TF GntR
1 GntR

Bacillus subtilis subsp. subtilis str. 168
1 GntR

Bacillus licheniformis DSM 13
1 GntR

Oceanobacillus iheyensis HTE831
Gluconate utilization
TF GudR
2 GudR

Bacillus subtilis subsp. subtilis str. 168
1 GudR

Bacillus licheniformis DSM 13
3 GudR

Bacillus clausii KSM-K16
1 GudR

Oceanobacillus iheyensis HTE831
Glucarate utilization; Galactarate utilization
TF LutR
3 LutR

Bacillus subtilis subsp. subtilis str. 168
3 LutR

Bacillus amyloliquefaciens FZB42
1 LutR

Bacillus pumilus SAFR-032
2 LutR

Bacillus licheniformis DSM 13
3 LutR

Anoxybacillus flavithermus WK1
2 LutR

Geobacillus kaustophilus HTA426
1 LutR

Bacillus cereus ATCC 14579
1 LutR

Bacillus halodurans C-125
1 LutR

Bacillus clausii KSM-K16
1 LutR

Oceanobacillus iheyensis HTE831
Lactate utilization
TF NagR
2 NagR

Bacillus subtilis subsp. subtilis str. 168
2 NagR

Bacillus amyloliquefaciens FZB42
2 NagR

Bacillus pumilus SAFR-032
1 NagR

Bacillus licheniformis DSM 13
1 NagR

Geobacillus kaustophilus HTA426
1 NagR

Bacillus cereus ATCC 14579
3 NagR

Bacillus halodurans C-125
1 NagR

Bacillus clausii KSM-K16
1 NagR

Oceanobacillus iheyensis HTE831
N-acetylglucosamine utilization
TF TreR
1 TreR

Bacillus subtilis subsp. subtilis str. 168
1 TreR

Bacillus amyloliquefaciens FZB42
1 TreR

Bacillus pumilus SAFR-032
1 TreR

Bacillus licheniformis DSM 13
1 TreR

Anoxybacillus flavithermus WK1
1 TreR

Geobacillus kaustophilus HTA426
1 TreR

Bacillus cereus ATCC 14579
2 TreR

Bacillus halodurans C-125
2 TreR

Bacillus clausii KSM-K16
Trehalose utilization
TF UxuR
1 UxuR

Bacillus licheniformis DSM 13
2 UxuR

Bacillus halodurans C-125
3 UxuR

Bacillus clausii KSM-K16
1 UxuR

Paenibacillus sp. JDR-2
Glucuronate utilization
TF YhcF
1 YhcF

Bacillus subtilis subsp. subtilis str. 168
1 YhcF

Bacillus amyloliquefaciens FZB42
1 YhcF

Bacillus cereus ATCC 14579
1 YhcF

Bacillus halodurans C-125
1 YhcF

Bacillus clausii KSM-K16
1 YhcF

Paenibacillus sp. JDR-2
Multidrug resistance; Multidrug efflux
TF YhcF2
1 YhcF2

Bacillus halodurans C-125
1 YhcF2

Bacillus clausii KSM-K16
1 YhcF2

Oceanobacillus iheyensis HTE831
2 YhcF2

Paenibacillus sp. JDR-2
Multidrug resistance; Multidrug efflux
TF YtrA
2 YtrA

Bacillus subtilis subsp. subtilis str. 168
1 YtrA

Bacillus amyloliquefaciens FZB42
1 YtrA

Bacillus pumilus SAFR-032
1 YtrA

Bacillus licheniformis DSM 13
1 YtrA

Anoxybacillus flavithermus WK1
1 YtrA

Geobacillus kaustophilus HTA426
1 YtrA

Bacillus cereus ATCC 14579
Ramoplanin resistance
GutR TF GutR
2 GutR

Bacillus subtilis subsp. subtilis str. 168
2 GutR

Bacillus amyloliquefaciens FZB42
Sorbitol utilization
HrcA TF HrcA
2 HrcA

Bacillus subtilis subsp. subtilis str. 168
2 HrcA

Bacillus amyloliquefaciens FZB42
2 HrcA

Bacillus pumilus SAFR-032
2 HrcA

Bacillus licheniformis DSM 13
2 HrcA

Anoxybacillus flavithermus WK1
2 HrcA

Geobacillus kaustophilus HTA426
2 HrcA

Bacillus cereus ATCC 14579
3 HrcA

Bacillus halodurans C-125
3 HrcA

Bacillus clausii KSM-K16
3 HrcA

Oceanobacillus iheyensis HTE831
3 HrcA

Paenibacillus sp. JDR-2
Heat shock response
HxlR TF HxlR
1 HxlR

Bacillus subtilis subsp. subtilis str. 168
1 HxlR

Bacillus amyloliquefaciens FZB42
1 HxlR

Bacillus pumilus SAFR-032
1 HxlR

Bacillus licheniformis DSM 13
1 HxlR

Oceanobacillus iheyensis HTE831
1 HxlR

Paenibacillus sp. JDR-2
Ribulose monophosphate pathway
TF YodB/CatR
5 YodB/CatR

Bacillus subtilis subsp. subtilis str. 168
4 YodB/CatR

Bacillus amyloliquefaciens FZB42
4 YodB/CatR

Bacillus pumilus SAFR-032
6 YodB/CatR

Bacillus licheniformis DSM 13
2 YodB/CatR

Anoxybacillus flavithermus WK1
6 YodB/CatR

Bacillus cereus ATCC 14579
3 YodB/CatR

Bacillus halodurans C-125
2 YodB/CatR

Oceanobacillus iheyensis HTE831
4 YodB/CatR

Paenibacillus sp. JDR-2
Oxidative stress response
TF YtcD
2 YtcD

Bacillus subtilis subsp. subtilis str. 168
2 YtcD

Bacillus amyloliquefaciens FZB42
2 YtcD

Bacillus pumilus SAFR-032
2 YtcD

Bacillus licheniformis DSM 13
2 YtcD

Paenibacillus sp. JDR-2
TF YybR/YdeP
5 YybR/YdeP

Bacillus subtilis subsp. subtilis str. 168
3 YybR/YdeP

Bacillus amyloliquefaciens FZB42
2 YybR/YdeP

Bacillus licheniformis DSM 13
2 YybR/YdeP

Bacillus cereus ATCC 14579
2 YybR/YdeP

Bacillus halodurans C-125
2 YybR/YdeP

Bacillus clausii KSM-K16
2 YybR/YdeP

Oceanobacillus iheyensis HTE831
2 YybR/YdeP

Paenibacillus sp. JDR-2
Multidrug resistance
IclR TF KipR
1 KipR

Bacillus subtilis subsp. subtilis str. 168
1 KipR

Bacillus amyloliquefaciens FZB42
1 KipR

Bacillus pumilus SAFR-032
1 KipR

Bacillus licheniformis DSM 13
1 KipR

Geobacillus kaustophilus HTA426
1 KipR

Bacillus cereus ATCC 14579
1 KipR

Bacillus halodurans C-125
Sporulation
LacI TF ABC1167
1 ABC1167

Bacillus clausii KSM-K16
Sugar utilization
TF BC0230
2 BC0230

Bacillus cereus ATCC 14579
TF BC5402
2 BC5402

Bacillus cereus ATCC 14579
TF BH1250
1 BH1250

Anoxybacillus flavithermus WK1
2 BH1250

Bacillus cereus ATCC 14579
2 BH1250

Bacillus halodurans C-125
2 BH1250

Bacillus clausii KSM-K16
Sugar utilization
TF BH1516
3 BH1516

Bacillus halodurans C-125
1 BH1516

Bacillus clausii KSM-K16
Maltose utilization
TF BglZ
2 BglZ

Bacillus subtilis subsp. subtilis str. 168
2 BglZ

Bacillus amyloliquefaciens FZB42
1 BglZ

Bacillus pumilus SAFR-032
1 BglZ

Bacillus licheniformis DSM 13
2 BglZ

Bacillus cereus ATCC 14579
Beta-glucosides utilization
TF CcpA
85 CcpA

Bacillus subtilis subsp. subtilis str. 168
74 CcpA

Bacillus amyloliquefaciens FZB42
66 CcpA

Bacillus pumilus SAFR-032
85 CcpA

Bacillus licheniformis DSM 13
25 CcpA

Anoxybacillus flavithermus WK1
17 CcpA

Geobacillus kaustophilus HTA426
22 CcpA

Bacillus cereus ATCC 14579
49 CcpA

Bacillus halodurans C-125
54 CcpA

Bacillus clausii KSM-K16
34 CcpA

Oceanobacillus iheyensis HTE831
11 CcpA

Paenibacillus sp. JDR-2
Carbon catabolism
TF ExuR
1 ExuR

Bacillus subtilis subsp. subtilis str. 168
1 ExuR

Bacillus amyloliquefaciens FZB42
1 ExuR

Bacillus pumilus SAFR-032
1 ExuR

Bacillus licheniformis DSM 13
Glucuronate utilization; Galacturonate utilization
TF GanR
2 GanR

Bacillus subtilis subsp. subtilis str. 168
2 GanR

Bacillus pumilus SAFR-032
2 GanR

Bacillus licheniformis DSM 13
1 GanR

Bacillus halodurans C-125
1 GanR

Bacillus clausii KSM-K16
Galactan utilization
TF GntR2
1 GntR2

Bacillus amyloliquefaciens FZB42
3 GntR2

Geobacillus kaustophilus HTA426
1 GntR2

Bacillus clausii KSM-K16
1 GntR2

Oceanobacillus iheyensis HTE831
Gluconate utilization
TF IolR1
2 IolR1

Bacillus subtilis subsp. subtilis str. 168
1 IolR1

Bacillus licheniformis DSM 13
2 IolR1

Geobacillus kaustophilus HTA426
2 IolR1

Bacillus halodurans C-125
1 IolR1

Paenibacillus sp. JDR-2
Inositol utilization
TF IolR2
1 IolR2

Geobacillus kaustophilus HTA426
2 IolR2

Bacillus halodurans C-125
Inositol utilization
TF KdgR
2 KdgR

Bacillus subtilis subsp. subtilis str. 168
3 KdgR

Bacillus pumilus SAFR-032
2 KdgR

Bacillus licheniformis DSM 13
Galacturonate utilization; Glucuronate utilization
TF KojR
2 KojR

Anoxybacillus flavithermus WK1
2 KojR

Bacillus halodurans C-125
Kojibiose utilization
TF MalR2
3 MalR2

Anoxybacillus flavithermus WK1
3 MalR2

Geobacillus kaustophilus HTA426
2 MalR2

Bacillus cereus ATCC 14579
4 MalR2

Bacillus halodurans C-125
3 MalR2

Bacillus clausii KSM-K16
2 MalR2

Oceanobacillus iheyensis HTE831
1 MalR2

Paenibacillus sp. JDR-2
Maltose utilization; Maltodextrin utilization
TF MdxR
2 MdxR

Bacillus subtilis subsp. subtilis str. 168
2 MdxR

Bacillus licheniformis DSM 13
Maltodextrin utilization; Maltose utilization
TF MsmR
1 MsmR

Bacillus subtilis subsp. subtilis str. 168
1 MsmR

Bacillus amyloliquefaciens FZB42
1 MsmR

Bacillus pumilus SAFR-032
2 MsmR

Bacillus licheniformis DSM 13
1 MsmR

Bacillus halodurans C-125
Alpha-galactosides utilization
TF NtdR
2 NtdR

Bacillus subtilis subsp. subtilis str. 168
2 NtdR

Bacillus pumilus SAFR-032
2 NtdR

Bacillus licheniformis DSM 13
Neotrehalosadiamine biosynthesis
TF RbsR
1 RbsR

Bacillus subtilis subsp. subtilis str. 168
1 RbsR

Bacillus amyloliquefaciens FZB42
1 RbsR

Bacillus pumilus SAFR-032
1 RbsR

Bacillus licheniformis DSM 13
1 RbsR

Anoxybacillus flavithermus WK1
1 RbsR

Geobacillus kaustophilus HTA426
1 RbsR

Bacillus cereus ATCC 14579
1 RbsR

Bacillus halodurans C-125
1 RbsR

Bacillus clausii KSM-K16
1 RbsR

Oceanobacillus iheyensis HTE831
1 RbsR

Paenibacillus sp. JDR-2
Ribose utilization
TF ScrR
2 ScrR

Bacillus amyloliquefaciens FZB42
2 ScrR

Bacillus licheniformis DSM 13
1 ScrR

Bacillus clausii KSM-K16
2 ScrR

Paenibacillus sp. JDR-2
Sucrose utilization
TF ScrR2
1 ScrR2

Bacillus cereus ATCC 14579
1 ScrR2

Bacillus halodurans C-125
1 ScrR2

Bacillus clausii KSM-K16
Sucrose utilization
TF UxuR
2 UxuR

Bacillus licheniformis DSM 13
2 UxuR

Bacillus clausii KSM-K16
2 UxuR

Oceanobacillus iheyensis HTE831
Glucuronate utilization
LexA TF LexA
28 LexA

Bacillus subtilis subsp. subtilis str. 168
21 LexA

Bacillus amyloliquefaciens FZB42
19 LexA

Bacillus pumilus SAFR-032
18 LexA

Bacillus licheniformis DSM 13
11 LexA

Anoxybacillus flavithermus WK1
9 LexA

Geobacillus kaustophilus HTA426
8 LexA

Bacillus cereus ATCC 14579
10 LexA

Bacillus halodurans C-125
8 LexA

Bacillus clausii KSM-K16
11 LexA

Oceanobacillus iheyensis HTE831
9 LexA

Paenibacillus sp. JDR-2
SOS response
LuxR TF ComA
7 ComA

Bacillus subtilis subsp. subtilis str. 168
4 ComA

Bacillus amyloliquefaciens FZB42
2 ComA

Bacillus pumilus SAFR-032
2 ComA

Bacillus licheniformis DSM 13
Competence
TF DesR
1 DesR

Bacillus subtilis subsp. subtilis str. 168
1 DesR

Bacillus amyloliquefaciens FZB42
1 DesR

Bacillus pumilus SAFR-032
1 DesR

Bacillus licheniformis DSM 13
1 DesR

Bacillus clausii KSM-K16
1 DesR

Oceanobacillus iheyensis HTE831
Cold shock response
TF YdfI
1 YdfI

Bacillus subtilis subsp. subtilis str. 168
1 YdfI

Bacillus amyloliquefaciens FZB42
1 YdfI

Bacillus licheniformis DSM 13
Metabolite transport
TF YvfU
1 YvfU

Bacillus subtilis subsp. subtilis str. 168
1 YvfU

Bacillus licheniformis DSM 13
1 YvfU

Bacillus cereus ATCC 14579
1 YvfU

Paenibacillus sp. JDR-2
Metabolite transport
LysR TF AlsR
2 AlsR

Bacillus subtilis subsp. subtilis str. 168
2 AlsR

Bacillus amyloliquefaciens FZB42
2 AlsR

Bacillus pumilus SAFR-032
2 AlsR

Bacillus licheniformis DSM 13
Acetoin production
TF BsdA
2 BsdA

Bacillus subtilis subsp. subtilis str. 168
2 BsdA

Bacillus amyloliquefaciens FZB42
2 BsdA

Bacillus licheniformis DSM 13
Salicylic acid resistance
TF CcpC
3 CcpC

Bacillus subtilis subsp. subtilis str. 168
2 CcpC

Bacillus amyloliquefaciens FZB42
2 CcpC

Bacillus pumilus SAFR-032
2 CcpC

Bacillus licheniformis DSM 13
1 CcpC

Bacillus cereus ATCC 14579
2 CcpC

Oceanobacillus iheyensis HTE831
Citrate metabolism
TF CitR
2 CitR

Bacillus subtilis subsp. subtilis str. 168
2 CitR

Bacillus amyloliquefaciens FZB42
2 CitR

Bacillus licheniformis DSM 13
2 CitR

Bacillus clausii KSM-K16
Citrate metabolism
TF CysL
2 CysL

Bacillus subtilis subsp. subtilis str. 168
2 CysL

Bacillus amyloliquefaciens FZB42
2 CysL

Bacillus pumilus SAFR-032
2 CysL

Bacillus licheniformis DSM 13
3 CysL

Anoxybacillus flavithermus WK1
2 CysL

Geobacillus kaustophilus HTA426
1 CysL

Bacillus halodurans C-125
2 CysL

Oceanobacillus iheyensis HTE831
Sulfite reduction
TF GltC
2 GltC

Bacillus subtilis subsp. subtilis str. 168
2 GltC

Bacillus amyloliquefaciens FZB42
2 GltC

Bacillus pumilus SAFR-032
2 GltC

Bacillus licheniformis DSM 13
2 GltC

Anoxybacillus flavithermus WK1
2 GltC

Geobacillus kaustophilus HTA426
Glutamate metabolism
TF GltC2
2 GltC2

Bacillus halodurans C-125
2 GltC2

Bacillus clausii KSM-K16
2 GltC2

Paenibacillus sp. JDR-2
Glutamate metabolism
TF GltR
2 GltR

Bacillus subtilis subsp. subtilis str. 168
3 GltR

Paenibacillus sp. JDR-2
unknown
TF YtlI
2 YtlI

Bacillus subtilis subsp. subtilis str. 168
2 YtlI

Bacillus amyloliquefaciens FZB42
L-cystine transporter
TF YwbI
2 YwbI

Bacillus subtilis subsp. subtilis str. 168
2 YwbI

Bacillus amyloliquefaciens FZB42
2 YwbI

Bacillus pumilus SAFR-032
1 YwbI

Bacillus licheniformis DSM 13
1 YwbI

Paenibacillus sp. JDR-2
Cell wall metabolism
LytTR TF LytT
1 LytT

Bacillus subtilis subsp. subtilis str. 168
1 LytT

Bacillus amyloliquefaciens FZB42
1 LytT

Bacillus pumilus SAFR-032
1 LytT

Bacillus licheniformis DSM 13
1 LytT

Bacillus cereus ATCC 14579
Penicillin resistance
MarR TF GbsR (YuaC)
1 GbsR (YuaC)

Bacillus subtilis subsp. subtilis str. 168
1 GbsR (YuaC)

Bacillus amyloliquefaciens FZB42
1 GbsR (YuaC)

Bacillus pumilus SAFR-032
1 GbsR (YuaC)

Bacillus licheniformis DSM 13
1 GbsR (YuaC)

Bacillus clausii KSM-K16
Glycine betaine synthesis
TF MhqR
4 MhqR

Bacillus subtilis subsp. subtilis str. 168
4 MhqR

Bacillus amyloliquefaciens FZB42
3 MhqR

Bacillus pumilus SAFR-032
4 MhqR

Bacillus licheniformis DSM 13
1 MhqR

Anoxybacillus flavithermus WK1
1 MhqR

Geobacillus kaustophilus HTA426
5 MhqR

Bacillus cereus ATCC 14579
3 MhqR

Bacillus clausii KSM-K16
2 MhqR

Oceanobacillus iheyensis HTE831
1 MhqR

Paenibacillus sp. JDR-2
2-Methylhydroquinone and catechol resistance
TF OhrR
1 OhrR

Bacillus subtilis subsp. subtilis str. 168
1 OhrR

Bacillus amyloliquefaciens FZB42
1 OhrR

Bacillus pumilus SAFR-032
1 OhrR

Bacillus licheniformis DSM 13
1 OhrR

Geobacillus kaustophilus HTA426
1 OhrR

Bacillus cereus ATCC 14579
2 OhrR

Oceanobacillus iheyensis HTE831
1 OhrR

Paenibacillus sp. JDR-2
Peroxide stress response
TF YetL
2 YetL

Bacillus subtilis subsp. subtilis str. 168
2 YetL

Bacillus amyloliquefaciens FZB42
Flavonoids response
TF YvbF/YvaV
4 YvbF/YvaV

Bacillus subtilis subsp. subtilis str. 168
4 YvbF/YvaV

Bacillus amyloliquefaciens FZB42
2 YvbF/YvaV

Bacillus pumilus SAFR-032
2 YvbF/YvaV

Bacillus licheniformis DSM 13
Osmotic stress response
TF YybA
3 YybA

Bacillus subtilis subsp. subtilis str. 168
4 YybA

Bacillus amyloliquefaciens FZB42
2 YybA

Bacillus licheniformis DSM 13
2 YybA

Bacillus halodurans C-125
2 YybA

Bacillus clausii KSM-K16
1 YybA

Oceanobacillus iheyensis HTE831
2 YybA

Paenibacillus sp. JDR-2
Polyamine homeostasis
MerR TF BltR
1 BltR

Bacillus subtilis subsp. subtilis str. 168
1 BltR

Bacillus amyloliquefaciens FZB42
1 BltR

Bacillus pumilus SAFR-032
1 BltR

Bacillus halodurans C-125
Multidrug resistance
TF BmrR
1 BmrR

Bacillus subtilis subsp. subtilis str. 168
1 BmrR

Bacillus licheniformis DSM 13
Multidrug resistance
TF GlnR
3 GlnR

Bacillus subtilis subsp. subtilis str. 168
2 GlnR

Bacillus amyloliquefaciens FZB42
2 GlnR

Bacillus pumilus SAFR-032
2 GlnR

Bacillus licheniformis DSM 13
2 GlnR

Anoxybacillus flavithermus WK1
3 GlnR

Geobacillus kaustophilus HTA426
4 GlnR

Bacillus cereus ATCC 14579
3 GlnR

Bacillus halodurans C-125
1 GlnR

Bacillus clausii KSM-K16
1 GlnR

Oceanobacillus iheyensis HTE831
2 GlnR

Paenibacillus sp. JDR-2
Nitrogen assimilation
TF TnrA
44 TnrA

Bacillus subtilis subsp. subtilis str. 168
40 TnrA

Bacillus amyloliquefaciens FZB42
23 TnrA

Bacillus pumilus SAFR-032
31 TnrA

Bacillus licheniformis DSM 13
10 TnrA

Anoxybacillus flavithermus WK1
10 TnrA

Geobacillus kaustophilus HTA426
21 TnrA

Bacillus halodurans C-125
15 TnrA

Bacillus clausii KSM-K16
10 TnrA

Oceanobacillus iheyensis HTE831
16 TnrA

Paenibacillus sp. JDR-2
Nitrogen assimilation
TF YdfL
1 YdfL

Bacillus subtilis subsp. subtilis str. 168
1 YdfL

Bacillus licheniformis DSM 13
1 YdfL

Bacillus cereus ATCC 14579
1 YdfL

Bacillus halodurans C-125
Multidrug resistance
TF YfmP
1 YfmP

Bacillus subtilis subsp. subtilis str. 168
1 YfmP

Bacillus amyloliquefaciens FZB42
1 YfmP

Bacillus pumilus SAFR-032
1 YfmP

Bacillus licheniformis DSM 13
1 YfmP

Bacillus cereus ATCC 14579
2 YfmP

Paenibacillus sp. JDR-2
Metal efflux
NiaR TF NiaR
3 NiaR

Bacillus subtilis subsp. subtilis str. 168
3 NiaR

Bacillus amyloliquefaciens FZB42
1 NiaR

Bacillus pumilus SAFR-032
3 NiaR

Bacillus licheniformis DSM 13
2 NiaR

Anoxybacillus flavithermus WK1
3 NiaR

Geobacillus kaustophilus HTA426
3 NiaR

Bacillus cereus ATCC 14579
3 NiaR

Bacillus halodurans C-125
3 NiaR

Bacillus clausii KSM-K16
NAD biosynthesis
NrdR TF NrdR
1 NrdR

Bacillus subtilis subsp. subtilis str. 168
1 NrdR

Bacillus amyloliquefaciens FZB42
1 NrdR

Bacillus pumilus SAFR-032
1 NrdR

Bacillus licheniformis DSM 13
1 NrdR

Anoxybacillus flavithermus WK1
2 NrdR

Geobacillus kaustophilus HTA426
1 NrdR

Bacillus cereus ATCC 14579
2 NrdR

Bacillus halodurans C-125
1 NrdR

Bacillus clausii KSM-K16
1 NrdR

Oceanobacillus iheyensis HTE831
2 NrdR

Paenibacillus sp. JDR-2
Deoxyribonucleotide biosynthesis
OmpR TF BceR
1 BceR

Bacillus subtilis subsp. subtilis str. 168
1 BceR

Bacillus amyloliquefaciens FZB42
1 BceR

Bacillus pumilus SAFR-032
1 BceR

Bacillus licheniformis DSM 13
1 BceR

Geobacillus kaustophilus HTA426
1 BceR

Bacillus halodurans C-125
1 BceR

Oceanobacillus iheyensis HTE831
Bacitracin resistance
TF CssR
3 CssR

Bacillus subtilis subsp. subtilis str. 168
3 CssR

Bacillus amyloliquefaciens FZB42
3 CssR

Bacillus pumilus SAFR-032
3 CssR

Bacillus licheniformis DSM 13
2 CssR

Oceanobacillus iheyensis HTE831
Protein secretion stress response
TF DctR
1 DctR

Bacillus subtilis subsp. subtilis str. 168
1 DctR

Bacillus amyloliquefaciens FZB42
1 DctR

Bacillus pumilus SAFR-032
1 DctR

Geobacillus kaustophilus HTA426
C4-dicarboxylate transport
TF LiaR
1 LiaR

Bacillus subtilis subsp. subtilis str. 168
1 LiaR

Bacillus amyloliquefaciens FZB42
1 LiaR

Bacillus pumilus SAFR-032
1 LiaR

Bacillus licheniformis DSM 13
1 LiaR

Anoxybacillus flavithermus WK1
1 LiaR

Geobacillus kaustophilus HTA426
1 LiaR

Bacillus cereus ATCC 14579
1 LiaR

Bacillus halodurans C-125
1 LiaR

Bacillus clausii KSM-K16
1 LiaR

Oceanobacillus iheyensis HTE831
1 LiaR

Paenibacillus sp. JDR-2
Cell wall-active antibiotics stress response
TF YvcP
1 YvcP

Bacillus subtilis subsp. subtilis str. 168
1 YvcP

Bacillus halodurans C-125
1 YvcP

Bacillus clausii KSM-K16
1 YvcP

Paenibacillus sp. JDR-2
Bacitracin resistance
PadR TF PadR
1 PadR

Bacillus subtilis subsp. subtilis str. 168
1 PadR

Bacillus amyloliquefaciens FZB42
2 PadR

Bacillus pumilus SAFR-032
1 PadR

Bacillus licheniformis DSM 13
Phenolic acid stress response
PurR TF PurR
10 PurR

Bacillus subtilis subsp. subtilis str. 168
10 PurR

Bacillus amyloliquefaciens FZB42
10 PurR

Bacillus pumilus SAFR-032
11 PurR

Bacillus licheniformis DSM 13
6 PurR

Anoxybacillus flavithermus WK1
8 PurR

Geobacillus kaustophilus HTA426
8 PurR

Bacillus cereus ATCC 14579
9 PurR

Bacillus halodurans C-125
9 PurR

Bacillus clausii KSM-K16
7 PurR

Oceanobacillus iheyensis HTE831
3 PurR

Paenibacillus sp. JDR-2
Purine metabolism
ROK TF XylR
3 XylR

Bacillus subtilis subsp. subtilis str. 168
3 XylR

Bacillus amyloliquefaciens FZB42
3 XylR

Bacillus pumilus SAFR-032
4 XylR

Bacillus licheniformis DSM 13
4 XylR

Geobacillus kaustophilus HTA426
4 XylR

Bacillus halodurans C-125
2 XylR

Bacillus clausii KSM-K16
3 XylR

Oceanobacillus iheyensis HTE831
2 XylR

Paenibacillus sp. JDR-2
Xylose utilization
Rex TF Rex
5 Rex

Bacillus subtilis subsp. subtilis str. 168
4 Rex

Bacillus amyloliquefaciens FZB42
3 Rex

Bacillus pumilus SAFR-032
7 Rex

Bacillus licheniformis DSM 13
6 Rex

Anoxybacillus flavithermus WK1
3 Rex

Geobacillus kaustophilus HTA426
5 Rex

Bacillus cereus ATCC 14579
1 Rex

Bacillus halodurans C-125
3 Rex

Bacillus clausii KSM-K16
4 Rex

Oceanobacillus iheyensis HTE831
4 Rex

Paenibacillus sp. JDR-2
Energy metabolism
RpiR TF GlvR
1 GlvR

Bacillus subtilis subsp. subtilis str. 168
1 GlvR

Bacillus amyloliquefaciens FZB42
1 GlvR

Bacillus licheniformis DSM 13
Maltose utilization
TF GlvR2
2 GlvR2

Bacillus pumilus SAFR-032
2 GlvR2

Bacillus clausii KSM-K16
Maltose utilization
TF MurR
1 MurR

Bacillus subtilis subsp. subtilis str. 168
1 MurR

Bacillus pumilus SAFR-032
1 MurR

Bacillus licheniformis DSM 13
N-acetylmuramate utilization
Rrf2 TF CymR
8 CymR

Bacillus subtilis subsp. subtilis str. 168
7 CymR

Bacillus amyloliquefaciens FZB42
4 CymR

Bacillus pumilus SAFR-032
6 CymR

Bacillus licheniformis DSM 13
6 CymR

Anoxybacillus flavithermus WK1
3 CymR

Geobacillus kaustophilus HTA426
6 CymR

Bacillus cereus ATCC 14579
5 CymR

Bacillus halodurans C-125
3 CymR

Bacillus clausii KSM-K16
4 CymR

Oceanobacillus iheyensis HTE831
9 CymR

Paenibacillus sp. JDR-2
Cysteine metabolism
TF NsrR
2 NsrR

Bacillus subtilis subsp. subtilis str. 168
2 NsrR

Bacillus amyloliquefaciens FZB42
3 NsrR

Bacillus pumilus SAFR-032
3 NsrR

Bacillus licheniformis DSM 13
2 NsrR

Geobacillus kaustophilus HTA426
1 NsrR

Bacillus halodurans C-125
2 NsrR

Bacillus clausii KSM-K16
2 NsrR

Oceanobacillus iheyensis HTE831
Nitrosative stress response
SorC TF CggR
1 CggR

Bacillus subtilis subsp. subtilis str. 168
1 CggR

Bacillus amyloliquefaciens FZB42
1 CggR

Bacillus pumilus SAFR-032
1 CggR

Bacillus licheniformis DSM 13
1 CggR

Anoxybacillus flavithermus WK1
1 CggR

Geobacillus kaustophilus HTA426
1 CggR

Bacillus cereus ATCC 14579
1 CggR

Bacillus halodurans C-125
1 CggR

Bacillus clausii KSM-K16
1 CggR

Oceanobacillus iheyensis HTE831
1 CggR

Paenibacillus sp. JDR-2
Glycolysis
TF DeoR
1 DeoR

Bacillus subtilis subsp. subtilis str. 168
1 DeoR

Bacillus amyloliquefaciens FZB42
1 DeoR

Bacillus pumilus SAFR-032
1 DeoR

Bacillus licheniformis DSM 13
1 DeoR

Bacillus cereus ATCC 14579
Deoxynucleoside utilization
SrmR TF PutR
1 PutR

Bacillus subtilis subsp. subtilis str. 168
1 PutR

Bacillus amyloliquefaciens FZB42
1 PutR

Bacillus pumilus SAFR-032
1 PutR

Bacillus licheniformis DSM 13
Proline utilization
TetR TF FadR
5 FadR

Bacillus subtilis subsp. subtilis str. 168
5 FadR

Bacillus amyloliquefaciens FZB42
5 FadR

Bacillus pumilus SAFR-032
5 FadR

Bacillus licheniformis DSM 13
5 FadR

Anoxybacillus flavithermus WK1
6 FadR

Geobacillus kaustophilus HTA426
4 FadR

Bacillus cereus ATCC 14579
4 FadR

Bacillus halodurans C-125
4 FadR

Bacillus clausii KSM-K16
5 FadR

Oceanobacillus iheyensis HTE831
Fatty acid degradation
TF FatR
1 FatR

Bacillus subtilis subsp. subtilis str. 168
1 FatR

Bacillus amyloliquefaciens FZB42
1 FatR

Bacillus pumilus SAFR-032
1 FatR

Bacillus licheniformis DSM 13
1 FatR

Bacillus cereus ATCC 14579
Toxic fatty acid stress response
TF LmrA
3 LmrA

Bacillus subtilis subsp. subtilis str. 168
1 LmrA

Bacillus amyloliquefaciens FZB42
Multidrug resistance
TF QdoR
3 QdoR

Bacillus subtilis subsp. subtilis str. 168
1 QdoR

Bacillus amyloliquefaciens FZB42
1 QdoR

Bacillus pumilus SAFR-032
1 QdoR

Bacillus licheniformis DSM 13
Multidrug resistance
TF YhgD
1 YhgD

Bacillus subtilis subsp. subtilis str. 168
2 YhgD

Bacillus amyloliquefaciens FZB42
2 YhgD

Bacillus pumilus SAFR-032
1 YhgD

Bacillus licheniformis DSM 13
1 YhgD

Anoxybacillus flavithermus WK1
3 YhgD

Geobacillus kaustophilus HTA426
2 YhgD

Bacillus cereus ATCC 14579
1 YhgD

Bacillus halodurans C-125
2 YhgD

Paenibacillus sp. JDR-2
TrpR TF HisR
2 HisR

Bacillus subtilis subsp. subtilis str. 168
2 HisR

Bacillus amyloliquefaciens FZB42
2 HisR

Bacillus pumilus SAFR-032
2 HisR

Bacillus licheniformis DSM 13
2 HisR

Anoxybacillus flavithermus WK1
1 HisR

Geobacillus kaustophilus HTA426
2 HisR

Bacillus halodurans C-125
2 HisR

Bacillus clausii KSM-K16
2 HisR

Oceanobacillus iheyensis HTE831
1 HisR

Paenibacillus sp. JDR-2
Histidine biosynthesis
XRE TF AnsR
2 AnsR

Bacillus subtilis subsp. subtilis str. 168
2 AnsR

Bacillus amyloliquefaciens FZB42
2 AnsR

Bacillus pumilus SAFR-032
2 AnsR

Bacillus licheniformis DSM 13
2 AnsR

Bacillus cereus ATCC 14579
Asparagine degradation
TF SinR
3 SinR

Bacillus subtilis subsp. subtilis str. 168
3 SinR

Bacillus amyloliquefaciens FZB42
3 SinR

Bacillus pumilus SAFR-032
3 SinR

Bacillus licheniformis DSM 13
1 SinR

Bacillus cereus ATCC 14579
1 SinR

Bacillus halodurans C-125
1 SinR

Oceanobacillus iheyensis HTE831
Biofilm formation
[Other] TF LevR
1 LevR

Bacillus subtilis subsp. subtilis str. 168
1 LevR

Bacillus licheniformis DSM 13
Levan utilization
RF00050 RNA FMN
2 FMN

Bacillus subtilis subsp. subtilis str. 168
2 FMN

Bacillus amyloliquefaciens FZB42
2 FMN

Bacillus pumilus SAFR-032
2 FMN

Bacillus licheniformis DSM 13
1 FMN

Anoxybacillus flavithermus WK1
2 FMN

Geobacillus kaustophilus HTA426
2 FMN

Bacillus cereus ATCC 14579
1 FMN

Bacillus halodurans C-125
2 FMN

Bacillus clausii KSM-K16
2 FMN

Oceanobacillus iheyensis HTE831
2 FMN

Paenibacillus sp. JDR-2
Riboflavin biosynthesis
RF00059 RNA TPP
5 TPP

Bacillus subtilis subsp. subtilis str. 168
6 TPP

Bacillus amyloliquefaciens FZB42
4 TPP

Bacillus pumilus SAFR-032
4 TPP

Bacillus licheniformis DSM 13
3 TPP

Anoxybacillus flavithermus WK1
2 TPP

Geobacillus kaustophilus HTA426
6 TPP

Bacillus cereus ATCC 14579
4 TPP

Bacillus halodurans C-125
5 TPP

Bacillus clausii KSM-K16
4 TPP

Oceanobacillus iheyensis HTE831
3 TPP

Paenibacillus sp. JDR-2
Thiamine biosynthesis
RF00080 RNA yybP-ykoY
2 yybP-ykoY

Bacillus subtilis subsp. subtilis str. 168
1 yybP-ykoY

Bacillus amyloliquefaciens FZB42
2 yybP-ykoY

Bacillus pumilus SAFR-032
2 yybP-ykoY

Bacillus licheniformis DSM 13
1 yybP-ykoY

Anoxybacillus flavithermus WK1
1 yybP-ykoY

Geobacillus kaustophilus HTA426
2 yybP-ykoY

Bacillus cereus ATCC 14579
1 yybP-ykoY

Bacillus halodurans C-125
2 yybP-ykoY

Bacillus clausii KSM-K16
2 yybP-ykoY

Oceanobacillus iheyensis HTE831
RF00162 RNA SAM
11 SAM

Bacillus subtilis subsp. subtilis str. 168
10 SAM

Bacillus amyloliquefaciens FZB42
9 SAM

Bacillus pumilus SAFR-032
10 SAM

Bacillus licheniformis DSM 13
6 SAM

Anoxybacillus flavithermus WK1
9 SAM

Geobacillus kaustophilus HTA426
17 SAM

Bacillus cereus ATCC 14579
5 SAM

Bacillus halodurans C-125
8 SAM

Bacillus clausii KSM-K16
12 SAM

Oceanobacillus iheyensis HTE831
1 SAM

Paenibacillus sp. JDR-2
Methionine biosynthesis
RF00167 RNA Purine
5 Purine

Bacillus subtilis subsp. subtilis str. 168
5 Purine

Bacillus amyloliquefaciens FZB42
4 Purine

Bacillus pumilus SAFR-032
4 Purine

Bacillus licheniformis DSM 13
5 Purine

Anoxybacillus flavithermus WK1
3 Purine

Geobacillus kaustophilus HTA426
6 Purine

Bacillus cereus ATCC 14579
5 Purine

Bacillus halodurans C-125
3 Purine

Bacillus clausii KSM-K16
4 Purine

Oceanobacillus iheyensis HTE831
5 Purine

Paenibacillus sp. JDR-2
Purine metabolism
RF00168 RNA Lysine
2 Lysine

Bacillus subtilis subsp. subtilis str. 168
2 Lysine

Bacillus amyloliquefaciens FZB42
2 Lysine

Bacillus pumilus SAFR-032
2 Lysine

Bacillus licheniformis DSM 13
1 Lysine

Anoxybacillus flavithermus WK1
1 Lysine

Geobacillus kaustophilus HTA426
4 Lysine

Bacillus cereus ATCC 14579
4 Lysine

Bacillus halodurans C-125
2 Lysine

Bacillus clausii KSM-K16
2 Lysine

Oceanobacillus iheyensis HTE831
1 Lysine

Paenibacillus sp. JDR-2
Lysine biosynthesis
RF00174 RNA Cobalamin
1 Cobalamin

Bacillus subtilis subsp. subtilis str. 168
1 Cobalamin

Bacillus pumilus SAFR-032
1 Cobalamin

Bacillus licheniformis DSM 13
3 Cobalamin

Anoxybacillus flavithermus WK1
3 Cobalamin

Geobacillus kaustophilus HTA426
1 Cobalamin

Bacillus cereus ATCC 14579
5 Cobalamin

Bacillus halodurans C-125
1 Cobalamin

Bacillus clausii KSM-K16
2 Cobalamin

Paenibacillus sp. JDR-2
Cobalamin biosynthesis
RF00230 RNA T-box(Ala)
1 T-box(Ala)

Bacillus subtilis subsp. subtilis str. 168
1 T-box(Ala)

Bacillus amyloliquefaciens FZB42
1 T-box(Ala)

Bacillus pumilus SAFR-032
1 T-box(Ala)

Bacillus licheniformis DSM 13
1 T-box(Ala)

Anoxybacillus flavithermus WK1
1 T-box(Ala)

Geobacillus kaustophilus HTA426
1 T-box(Ala)

Bacillus cereus ATCC 14579
1 T-box(Ala)

Bacillus halodurans C-125
1 T-box(Ala)

Bacillus clausii KSM-K16
1 T-box(Ala)

Oceanobacillus iheyensis HTE831
Amino acid metabolism
RNA T-box(Arg)
1 T-box(Arg)

Bacillus halodurans C-125
1 T-box(Arg)

Paenibacillus sp. JDR-2
Amino acid metabolism
RNA T-box(Asn)
1 T-box(Asn)

Bacillus subtilis subsp. subtilis str. 168
1 T-box(Asn)

Bacillus amyloliquefaciens FZB42
1 T-box(Asn)

Bacillus licheniformis DSM 13
1 T-box(Asn)

Anoxybacillus flavithermus WK1
2 T-box(Asn)

Bacillus cereus ATCC 14579
1 T-box(Asn)

Bacillus halodurans C-125
1 T-box(Asn)

Bacillus clausii KSM-K16
Amino acid metabolism
RNA T-box(Asp)
1 T-box(Asp)

Geobacillus kaustophilus HTA426
2 T-box(Asp)

Bacillus cereus ATCC 14579
1 T-box(Asp)

Oceanobacillus iheyensis HTE831
1 T-box(Asp)

Paenibacillus sp. JDR-2
Amino acid metabolism
RNA T-box(Cys)
1 T-box(Cys)

Bacillus subtilis subsp. subtilis str. 168
1 T-box(Cys)

Bacillus amyloliquefaciens FZB42
1 T-box(Cys)

Bacillus pumilus SAFR-032
1 T-box(Cys)

Bacillus licheniformis DSM 13
1 T-box(Cys)

Anoxybacillus flavithermus WK1
1 T-box(Cys)

Geobacillus kaustophilus HTA426
1 T-box(Cys)

Bacillus cereus ATCC 14579
1 T-box(Cys)

Bacillus halodurans C-125
1 T-box(Cys)

Bacillus clausii KSM-K16
1 T-box(Cys)

Oceanobacillus iheyensis HTE831
1 T-box(Cys)

Paenibacillus sp. JDR-2
Amino acid metabolism
RNA T-box(Gln) Amino acid metabolism
RNA T-box(Gly)
1 T-box(Gly)

Bacillus subtilis subsp. subtilis str. 168
1 T-box(Gly)

Bacillus amyloliquefaciens FZB42
1 T-box(Gly)

Bacillus pumilus SAFR-032
1 T-box(Gly)

Bacillus licheniformis DSM 13
1 T-box(Gly)

Anoxybacillus flavithermus WK1
1 T-box(Gly)

Geobacillus kaustophilus HTA426
1 T-box(Gly)

Bacillus halodurans C-125
1 T-box(Gly)

Oceanobacillus iheyensis HTE831
1 T-box(Gly)

Paenibacillus sp. JDR-2
Amino acid metabolism
RNA T-box(Ile)
1 T-box(Ile)

Bacillus subtilis subsp. subtilis str. 168
1 T-box(Ile)

Bacillus amyloliquefaciens FZB42
1 T-box(Ile)

Bacillus pumilus SAFR-032
1 T-box(Ile)

Bacillus licheniformis DSM 13
1 T-box(Ile)

Anoxybacillus flavithermus WK1
1 T-box(Ile)

Geobacillus kaustophilus HTA426
4 T-box(Ile)

Bacillus cereus ATCC 14579
1 T-box(Ile)

Bacillus halodurans C-125
1 T-box(Ile)

Bacillus clausii KSM-K16
3 T-box(Ile)

Oceanobacillus iheyensis HTE831
1 T-box(Ile)

Paenibacillus sp. JDR-2
Amino acid metabolism
RNA T-box(Leu)
3 T-box(Leu)

Bacillus subtilis subsp. subtilis str. 168
3 T-box(Leu)

Bacillus amyloliquefaciens FZB42
4 T-box(Leu)

Bacillus pumilus SAFR-032
3 T-box(Leu)

Bacillus licheniformis DSM 13
2 T-box(Leu)

Anoxybacillus flavithermus WK1
2 T-box(Leu)

Geobacillus kaustophilus HTA426
2 T-box(Leu)

Bacillus cereus ATCC 14579
2 T-box(Leu)

Bacillus halodurans C-125
2 T-box(Leu)

Bacillus clausii KSM-K16
2 T-box(Leu)

Oceanobacillus iheyensis HTE831
4 T-box(Leu)

Paenibacillus sp. JDR-2
Amino acid metabolism
RNA T-box(Lys)
1 T-box(Lys)

Bacillus amyloliquefaciens FZB42
1 T-box(Lys)

Bacillus pumilus SAFR-032
1 T-box(Lys)

Bacillus cereus ATCC 14579
1 T-box(Lys)

Bacillus halodurans C-125
1 T-box(Lys)

Bacillus clausii KSM-K16
2 T-box(Lys)

Paenibacillus sp. JDR-2
Amino acid metabolism
RNA T-box(Met)
1 T-box(Met)

Bacillus pumilus SAFR-032
1 T-box(Met)

Bacillus cereus ATCC 14579
1 T-box(Met)

Bacillus halodurans C-125
1 T-box(Met)

Bacillus clausii KSM-K16
2 T-box(Met)

Paenibacillus sp. JDR-2
Amino acid metabolism
RNA T-box(Phe)
1 T-box(Phe)

Bacillus subtilis subsp. subtilis str. 168
1 T-box(Phe)

Bacillus amyloliquefaciens FZB42
1 T-box(Phe)

Bacillus pumilus SAFR-032
1 T-box(Phe)

Bacillus licheniformis DSM 13
1 T-box(Phe)

Anoxybacillus flavithermus WK1
1 T-box(Phe)

Geobacillus kaustophilus HTA426
1 T-box(Phe)

Bacillus cereus ATCC 14579
1 T-box(Phe)

Bacillus halodurans C-125
1 T-box(Phe)

Bacillus clausii KSM-K16
1 T-box(Phe)

Oceanobacillus iheyensis HTE831
1 T-box(Phe)

Paenibacillus sp. JDR-2
Amino acid metabolism
RNA T-box(Pro)
2 T-box(Pro)

Bacillus subtilis subsp. subtilis str. 168
2 T-box(Pro)

Bacillus amyloliquefaciens FZB42
3 T-box(Pro)

Bacillus pumilus SAFR-032
2 T-box(Pro)

Bacillus licheniformis DSM 13
2 T-box(Pro)

Anoxybacillus flavithermus WK1
2 T-box(Pro)

Geobacillus kaustophilus HTA426
1 T-box(Pro)

Bacillus cereus ATCC 14579
1 T-box(Pro)

Bacillus halodurans C-125
1 T-box(Pro)

Bacillus clausii KSM-K16
3 T-box(Pro)

Oceanobacillus iheyensis HTE831
2 T-box(Pro)

Paenibacillus sp. JDR-2
Amino acid metabolism
RNA T-box(Ser)
1 T-box(Ser)

Bacillus subtilis subsp. subtilis str. 168
1 T-box(Ser)

Bacillus amyloliquefaciens FZB42
1 T-box(Ser)

Bacillus pumilus SAFR-032
1 T-box(Ser)

Bacillus licheniformis DSM 13
1 T-box(Ser)

Anoxybacillus flavithermus WK1
1 T-box(Ser)

Geobacillus kaustophilus HTA426
1 T-box(Ser)

Bacillus cereus ATCC 14579
2 T-box(Ser)

Bacillus halodurans C-125
2 T-box(Ser)

Bacillus clausii KSM-K16
1 T-box(Ser)

Oceanobacillus iheyensis HTE831
1 T-box(Ser)

Paenibacillus sp. JDR-2
Amino acid metabolism
RNA T-box(Thr)
2 T-box(Thr)

Bacillus subtilis subsp. subtilis str. 168
1 T-box(Thr)

Bacillus amyloliquefaciens FZB42
2 T-box(Thr)

Bacillus pumilus SAFR-032
2 T-box(Thr)

Bacillus licheniformis DSM 13
1 T-box(Thr)

Anoxybacillus flavithermus WK1
1 T-box(Thr)

Geobacillus kaustophilus HTA426
5 T-box(Thr)

Bacillus cereus ATCC 14579
1 T-box(Thr)

Bacillus halodurans C-125
2 T-box(Thr)

Bacillus clausii KSM-K16
1 T-box(Thr)

Oceanobacillus iheyensis HTE831
2 T-box(Thr)

Paenibacillus sp. JDR-2
Amino acid metabolism
RNA T-box(Trp)
2 T-box(Trp)

Bacillus subtilis subsp. subtilis str. 168
1 T-box(Trp)

Bacillus amyloliquefaciens FZB42
1 T-box(Trp)

Bacillus pumilus SAFR-032
2 T-box(Trp)

Bacillus licheniformis DSM 13
1 T-box(Trp)

Anoxybacillus flavithermus WK1
1 T-box(Trp)

Geobacillus kaustophilus HTA426
3 T-box(Trp)

Bacillus cereus ATCC 14579
1 T-box(Trp)

Bacillus halodurans C-125
1 T-box(Trp)

Bacillus clausii KSM-K16
2 T-box(Trp)

Oceanobacillus iheyensis HTE831
2 T-box(Trp)

Paenibacillus sp. JDR-2
Amino acid metabolism
RNA T-box(Tyr)
2 T-box(Tyr)

Bacillus subtilis subsp. subtilis str. 168
1 T-box(Tyr)

Bacillus amyloliquefaciens FZB42
1 T-box(Tyr)

Bacillus pumilus SAFR-032
2 T-box(Tyr)

Bacillus licheniformis DSM 13
1 T-box(Tyr)

Anoxybacillus flavithermus WK1
1 T-box(Tyr)

Geobacillus kaustophilus HTA426
6 T-box(Tyr)

Bacillus cereus ATCC 14579
1 T-box(Tyr)

Bacillus halodurans C-125
1 T-box(Tyr)

Bacillus clausii KSM-K16
2 T-box(Tyr)

Oceanobacillus iheyensis HTE831
1 T-box(Tyr)

Paenibacillus sp. JDR-2
Amino acid metabolism
RNA T-box(Val)
1 T-box(Val)

Bacillus subtilis subsp. subtilis str. 168
1 T-box(Val)

Bacillus amyloliquefaciens FZB42
1 T-box(Val)

Bacillus pumilus SAFR-032
1 T-box(Val)

Bacillus licheniformis DSM 13
1 T-box(Val)

Anoxybacillus flavithermus WK1
1 T-box(Val)

Geobacillus kaustophilus HTA426
1 T-box(Val)

Bacillus cereus ATCC 14579
1 T-box(Val)

Bacillus halodurans C-125
1 T-box(Val)

Bacillus clausii KSM-K16
1 T-box(Val)

Oceanobacillus iheyensis HTE831
Amino acid metabolism
RF00234 RNA glmS
1 glmS

Bacillus subtilis subsp. subtilis str. 168
1 glmS

Bacillus amyloliquefaciens FZB42
1 glmS

Bacillus pumilus SAFR-032
1 glmS

Bacillus licheniformis DSM 13
1 glmS

Anoxybacillus flavithermus WK1
1 glmS

Geobacillus kaustophilus HTA426
1 glmS

Bacillus cereus ATCC 14579
1 glmS

Bacillus halodurans C-125
1 glmS

Bacillus clausii KSM-K16
1 glmS

Oceanobacillus iheyensis HTE831
1 glmS

Paenibacillus sp. JDR-2
Amino sugar metabolism
RF00379 RNA ydaO-yuaA
2 ydaO-yuaA

Bacillus subtilis subsp. subtilis str. 168
1 ydaO-yuaA

Bacillus amyloliquefaciens FZB42
2 ydaO-yuaA

Bacillus pumilus SAFR-032
2 ydaO-yuaA

Bacillus licheniformis DSM 13
2 ydaO-yuaA

Geobacillus kaustophilus HTA426
2 ydaO-yuaA

Bacillus cereus ATCC 14579
1 ydaO-yuaA

Bacillus halodurans C-125
1 ydaO-yuaA

Oceanobacillus iheyensis HTE831
5 ydaO-yuaA

Paenibacillus sp. JDR-2
Cell wall metabolism; Osmotic stress response
RF00380 RNA ykoK
1 ykoK

Bacillus subtilis subsp. subtilis str. 168
1 ykoK

Bacillus amyloliquefaciens FZB42
1 ykoK

Bacillus pumilus SAFR-032
1 ykoK

Bacillus licheniformis DSM 13
2 ykoK

Bacillus halodurans C-125
1 ykoK

Bacillus clausii KSM-K16
Magnesium homeostasis
RF00442 RNA ykkC-yxkD
2 ykkC-yxkD

Bacillus subtilis subsp. subtilis str. 168
2 ykkC-yxkD

Bacillus amyloliquefaciens FZB42
1 ykkC-yxkD

Bacillus pumilus SAFR-032
2 ykkC-yxkD

Bacillus licheniformis DSM 13
1 ykkC-yxkD

Bacillus halodurans C-125
1 ykkC-yxkD

Bacillus clausii KSM-K16
1 ykkC-yxkD

Oceanobacillus iheyensis HTE831
1 ykkC-yxkD

Paenibacillus sp. JDR-2
Multidrug resistance
RF00504 RNA Glycine
1 Glycine

Bacillus subtilis subsp. subtilis str. 168
2 Glycine

Bacillus amyloliquefaciens FZB42
2 Glycine

Bacillus pumilus SAFR-032
1 Glycine

Bacillus licheniformis DSM 13
1 Glycine

Anoxybacillus flavithermus WK1
1 Glycine

Geobacillus kaustophilus HTA426
1 Glycine

Bacillus cereus ATCC 14579
1 Glycine

Bacillus halodurans C-125
1 Glycine

Bacillus clausii KSM-K16
1 Glycine

Oceanobacillus iheyensis HTE831
Glycine metabolism
RF00515 RNA PyrR
3 PyrR

Bacillus subtilis subsp. subtilis str. 168
3 PyrR

Bacillus amyloliquefaciens FZB42
3 PyrR

Bacillus pumilus SAFR-032
3 PyrR

Bacillus licheniformis DSM 13
3 PyrR

Anoxybacillus flavithermus WK1
3 PyrR

Geobacillus kaustophilus HTA426
4 PyrR

Bacillus cereus ATCC 14579
3 PyrR

Bacillus halodurans C-125
2 PyrR

Bacillus clausii KSM-K16
3 PyrR

Oceanobacillus iheyensis HTE831
1 PyrR

Paenibacillus sp. JDR-2
Pyrimidine metabolism
RF00516 RNA ylbH
1 ylbH

Bacillus subtilis subsp. subtilis str. 168
1 ylbH

Bacillus amyloliquefaciens FZB42
1 ylbH

Bacillus pumilus SAFR-032
1 ylbH

Bacillus licheniformis DSM 13
1 ylbH

Anoxybacillus flavithermus WK1
1 ylbH

Geobacillus kaustophilus HTA426
1 ylbH

Bacillus cereus ATCC 14579
1 ylbH

Bacillus halodurans C-125
1 ylbH

Oceanobacillus iheyensis HTE831
1 ylbH

Paenibacillus sp. JDR-2
RF00522 RNA PreQ1
1 PreQ1

Bacillus subtilis subsp. subtilis str. 168
1 PreQ1

Bacillus amyloliquefaciens FZB42
1 PreQ1

Bacillus pumilus SAFR-032
1 PreQ1

Bacillus licheniformis DSM 13
1 PreQ1

Anoxybacillus flavithermus WK1
1 PreQ1

Geobacillus kaustophilus HTA426
2 PreQ1

Bacillus cereus ATCC 14579
1 PreQ1

Bacillus halodurans C-125
2 PreQ1

Bacillus clausii KSM-K16
3 PreQ1

Oceanobacillus iheyensis HTE831
1 PreQ1

Paenibacillus sp. JDR-2
Queuosine biosynthesis
RF00555 RNA L13_leader
1 L13_leader

Bacillus subtilis subsp. subtilis str. 168
1 L13_leader

Bacillus amyloliquefaciens FZB42
1 L13_leader

Bacillus pumilus SAFR-032
1 L13_leader

Bacillus licheniformis DSM 13
1 L13_leader

Anoxybacillus flavithermus WK1
1 L13_leader

Geobacillus kaustophilus HTA426
1 L13_leader

Bacillus cereus ATCC 14579
1 L13_leader

Oceanobacillus iheyensis HTE831
Ribosome biogenesis
RF00556 RNA L19_leader
1 L19_leader

Bacillus subtilis subsp. subtilis str. 168
1 L19_leader

Bacillus amyloliquefaciens FZB42
1 L19_leader

Bacillus pumilus SAFR-032
1 L19_leader

Bacillus licheniformis DSM 13
1 L19_leader

Anoxybacillus flavithermus WK1
1 L19_leader

Geobacillus kaustophilus HTA426
1 L19_leader

Bacillus cereus ATCC 14579
1 L19_leader

Bacillus halodurans C-125
1 L19_leader

Bacillus clausii KSM-K16
1 L19_leader

Oceanobacillus iheyensis HTE831
Ribosome biogenesis
RF00557 RNA L10_leader
1 L10_leader

Bacillus subtilis subsp. subtilis str. 168
1 L10_leader

Bacillus amyloliquefaciens FZB42
1 L10_leader

Bacillus pumilus SAFR-032
1 L10_leader

Bacillus licheniformis DSM 13
1 L10_leader

Anoxybacillus flavithermus WK1
1 L10_leader

Geobacillus kaustophilus HTA426
1 L10_leader

Bacillus cereus ATCC 14579
1 L10_leader

Bacillus halodurans C-125
1 L10_leader

Bacillus clausii KSM-K16
1 L10_leader

Oceanobacillus iheyensis HTE831
1 L10_leader

Paenibacillus sp. JDR-2
Ribosome biogenesis
RF00558 RNA L20_leader
1 L20_leader

Bacillus subtilis subsp. subtilis str. 168
1 L20_leader

Bacillus amyloliquefaciens FZB42
1 L20_leader

Bacillus licheniformis DSM 13
1 L20_leader

Anoxybacillus flavithermus WK1
1 L20_leader

Bacillus cereus ATCC 14579
1 L20_leader

Bacillus halodurans C-125
1 L20_leader

Bacillus clausii KSM-K16
1 L20_leader

Oceanobacillus iheyensis HTE831
1 L20_leader

Paenibacillus sp. JDR-2
Ribosome biogenesis
RF00559 RNA L21_leader
1 L21_leader

Bacillus subtilis subsp. subtilis str. 168
1 L21_leader

Bacillus amyloliquefaciens FZB42
1 L21_leader

Bacillus pumilus SAFR-032
1 L21_leader

Bacillus licheniformis DSM 13
1 L21_leader

Anoxybacillus flavithermus WK1
1 L21_leader

Geobacillus kaustophilus HTA426
1 L21_leader

Bacillus cereus ATCC 14579
1 L21_leader

Bacillus halodurans C-125
1 L21_leader

Bacillus clausii KSM-K16
1 L21_leader

Oceanobacillus iheyensis HTE831
1 L21_leader

Paenibacillus sp. JDR-2
Ribosome biogenesis
RF01051 RNA GEMM_RNA_motif
1 GEMM_RNA_motif

Bacillus pumilus SAFR-032
1 GEMM_RNA_motif

Bacillus licheniformis DSM 13
2 GEMM_RNA_motif

Anoxybacillus flavithermus WK1
2 GEMM_RNA_motif

Bacillus cereus ATCC 14579
1 GEMM_RNA_motif

Bacillus halodurans C-125
1 GEMM_RNA_motif

Oceanobacillus iheyensis HTE831
1 GEMM_RNA_motif

Paenibacillus sp. JDR-2
Second messenger response