Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Collection of regulogs in Clostridiaceae taxonomic group

General statistics
Genomes 20
TF regulogs 0
TF regulons 0
TF binding sites 0
RNA regulogs 40
RNA regulons 566
RNA sites 968

This collection involves all regulons that were tentatively predicted by applying integrative comparative genomic approach to a single taxonomic group of closely-related genomes. To infer the regulons operated by transcription factors (TFs), we combined the identification of TF binding sites and cross-genome comparison of regulons with the analysis of the genomic and functional context of candidate target genes. To infer the regulons operated by regulatory RNAs such as riboswitches, we identified candidate RNA regulatory elements using HMM profiles and further analyzed their genomic and functional context.

Studied genomes and reconstructed regulon statistics
TF RNA Total
Genomes Regulons Sites Regulons Sites Regulons Sites
Clostridium acetobutylicum ATCC 824 0 0 33 59 33 59
Clostridium bartlettii DSM 16795 0 0 28 55 28 55
Clostridium beijerincki NCIMB 8052 0 0 34 65 34 65
Clostridium bolteae ATCC BAA-613 0 0 24 40 24 40
Clostridium botulinum A str. ATCC 3502 0 0 34 64 34 64
Clostridium butyricum 5521 0 0 30 51 30 51
Clostridium cellulolyticum H10 0 0 29 42 29 42
Clostridium difficile 630 0 0 31 67 31 67
Clostridium hiranonis DSM 13275 0 0 28 41 28 41
Clostridium kluyveri DSM 555 0 0 32 76 32 76
Clostridium leptum DSM 753 0 0 18 20 18 20
Clostridium nexile DSM 1787 0 0 25 32 25 32
Clostridium novyi NT 0 0 32 57 32 57
Clostridium perfringens ATCC 13124 0 0 33 61 33 61
Clostridium phytofermentans ISDg 0 0 26 37 26 37
Clostridium scindens ATCC 35704 0 0 25 34 25 34
Clostridium sp. L2-50 0 0 19 23 19 23
Clostridium sp. OhILAs 0 0 35 63 35 63
Clostridium sp. SS2/1 0 0 18 25 18 25
Clostridium tetani E88 0 0 32 56 32 56
Genomic distribution of regulons
Family Type Regulator Function
RF00050 RNA FMN
3 FMN

Clostridium sp. SS2/1
1 FMN

Clostridium sp. L2-50
1 FMN

Clostridium leptum DSM 753
1 FMN

Clostridium sp. OhILAs
2 FMN

Clostridium cellulolyticum H10
1 FMN

Clostridium phytofermentans ISDg
2 FMN

Clostridium acetobutylicum ATCC 824
3 FMN

Clostridium difficile 630
1 FMN

Clostridium bolteae ATCC BAA-613
2 FMN

Clostridium butyricum 5521
1 FMN

Clostridium nexile DSM 1787
3 FMN

Clostridium bartlettii DSM 16795
2 FMN

Clostridium hiranonis DSM 13275
2 FMN

Clostridium beijerincki NCIMB 8052
2 FMN

Clostridium scindens ATCC 35704
3 FMN

Clostridium botulinum A str. ATCC 3502
2 FMN

Clostridium kluyveri DSM 555
2 FMN

Clostridium novyi NT
2 FMN

Clostridium perfringens ATCC 13124
2 FMN

Clostridium tetani E88
Riboflavin biosynthesis
RF00059 RNA TPP
2 TPP

Clostridium sp. SS2/1
1 TPP

Clostridium sp. L2-50
2 TPP

Clostridium leptum DSM 753
3 TPP

Clostridium sp. OhILAs
2 TPP

Clostridium cellulolyticum H10
1 TPP

Clostridium phytofermentans ISDg
5 TPP

Clostridium acetobutylicum ATCC 824
3 TPP

Clostridium difficile 630
3 TPP

Clostridium bolteae ATCC BAA-613
3 TPP

Clostridium butyricum 5521
4 TPP

Clostridium nexile DSM 1787
2 TPP

Clostridium bartlettii DSM 16795
2 TPP

Clostridium hiranonis DSM 13275
4 TPP

Clostridium beijerincki NCIMB 8052
3 TPP

Clostridium scindens ATCC 35704
4 TPP

Clostridium botulinum A str. ATCC 3502
5 TPP

Clostridium kluyveri DSM 555
3 TPP

Clostridium novyi NT
5 TPP

Clostridium perfringens ATCC 13124
3 TPP

Clostridium tetani E88
Thiamine biosynthesis
RF00080 RNA yybP-ykoY
2 yybP-ykoY

Clostridium sp. SS2/1
2 yybP-ykoY

Clostridium sp. L2-50
2 yybP-ykoY

Clostridium cellulolyticum H10
3 yybP-ykoY

Clostridium phytofermentans ISDg
1 yybP-ykoY

Clostridium difficile 630
3 yybP-ykoY

Clostridium bolteae ATCC BAA-613
2 yybP-ykoY

Clostridium butyricum 5521
2 yybP-ykoY

Clostridium nexile DSM 1787
2 yybP-ykoY

Clostridium bartlettii DSM 16795
2 yybP-ykoY

Clostridium hiranonis DSM 13275
4 yybP-ykoY

Clostridium beijerincki NCIMB 8052
2 yybP-ykoY

Clostridium scindens ATCC 35704
3 yybP-ykoY

Clostridium botulinum A str. ATCC 3502
2 yybP-ykoY

Clostridium kluyveri DSM 555
2 yybP-ykoY

Clostridium perfringens ATCC 13124
1 yybP-ykoY

Clostridium tetani E88
RF00114 RNA S15
1 S15

Clostridium sp. SS2/1
1 S15

Clostridium sp. L2-50
1 S15

Clostridium bolteae ATCC BAA-613
Ribosome biogenesis
RF00162 RNA SAM
1 SAM

Clostridium sp. L2-50
1 SAM

Clostridium leptum DSM 753
4 SAM

Clostridium sp. OhILAs
1 SAM

Clostridium cellulolyticum H10
1 SAM

Clostridium phytofermentans ISDg
6 SAM

Clostridium acetobutylicum ATCC 824
6 SAM

Clostridium difficile 630
1 SAM

Clostridium bolteae ATCC BAA-613
4 SAM

Clostridium butyricum 5521
1 SAM

Clostridium nexile DSM 1787
4 SAM

Clostridium bartlettii DSM 16795
3 SAM

Clostridium hiranonis DSM 13275
5 SAM

Clostridium beijerincki NCIMB 8052
1 SAM

Clostridium scindens ATCC 35704
5 SAM

Clostridium botulinum A str. ATCC 3502
18 SAM

Clostridium kluyveri DSM 555
3 SAM

Clostridium novyi NT
2 SAM

Clostridium perfringens ATCC 13124
4 SAM

Clostridium tetani E88
Methionine biosynthesis
RF00167 RNA Purine
2 Purine

Clostridium sp. OhILAs
1 Purine

Clostridium cellulolyticum H10
3 Purine

Clostridium acetobutylicum ATCC 824
4 Purine

Clostridium difficile 630
2 Purine

Clostridium bolteae ATCC BAA-613
3 Purine

Clostridium butyricum 5521
2 Purine

Clostridium bartlettii DSM 16795
1 Purine

Clostridium hiranonis DSM 13275
4 Purine

Clostridium beijerincki NCIMB 8052
1 Purine

Clostridium scindens ATCC 35704
6 Purine

Clostridium botulinum A str. ATCC 3502
3 Purine

Clostridium kluyveri DSM 555
4 Purine

Clostridium novyi NT
4 Purine

Clostridium perfringens ATCC 13124
1 Purine

Clostridium tetani E88
Purine metabolism
RF00168 RNA Lysine
1 Lysine

Clostridium sp. L2-50
1 Lysine

Clostridium leptum DSM 753
2 Lysine

Clostridium sp. OhILAs
1 Lysine

Clostridium cellulolyticum H10
2 Lysine

Clostridium phytofermentans ISDg
1 Lysine

Clostridium acetobutylicum ATCC 824
4 Lysine

Clostridium difficile 630
2 Lysine

Clostridium bolteae ATCC BAA-613
1 Lysine

Clostridium butyricum 5521
1 Lysine

Clostridium nexile DSM 1787
3 Lysine

Clostridium bartlettii DSM 16795
3 Lysine

Clostridium hiranonis DSM 13275
2 Lysine

Clostridium beijerincki NCIMB 8052
1 Lysine

Clostridium scindens ATCC 35704
3 Lysine

Clostridium botulinum A str. ATCC 3502
2 Lysine

Clostridium kluyveri DSM 555
3 Lysine

Clostridium novyi NT
3 Lysine

Clostridium perfringens ATCC 13124
2 Lysine

Clostridium tetani E88
Lysine biosynthesis
RF00174 RNA Cobalamin
1 Cobalamin

Clostridium sp. SS2/1
1 Cobalamin

Clostridium leptum DSM 753
8 Cobalamin

Clostridium sp. OhILAs
2 Cobalamin

Clostridium cellulolyticum H10
4 Cobalamin

Clostridium phytofermentans ISDg
2 Cobalamin

Clostridium acetobutylicum ATCC 824
3 Cobalamin

Clostridium difficile 630
1 Cobalamin

Clostridium bolteae ATCC BAA-613
2 Cobalamin

Clostridium butyricum 5521
1 Cobalamin

Clostridium nexile DSM 1787
4 Cobalamin

Clostridium bartlettii DSM 16795
1 Cobalamin

Clostridium hiranonis DSM 13275
1 Cobalamin

Clostridium beijerincki NCIMB 8052
2 Cobalamin

Clostridium scindens ATCC 35704
1 Cobalamin

Clostridium botulinum A str. ATCC 3502
1 Cobalamin

Clostridium kluyveri DSM 555
3 Cobalamin

Clostridium novyi NT
4 Cobalamin

Clostridium perfringens ATCC 13124
8 Cobalamin

Clostridium tetani E88
Cobalamin biosynthesis
RF00230 RNA T-box(Ala)
1 T-box(Ala)

Clostridium leptum DSM 753
1 T-box(Ala)

Clostridium sp. OhILAs
2 T-box(Ala)

Clostridium cellulolyticum H10
1 T-box(Ala)

Clostridium phytofermentans ISDg
1 T-box(Ala)

Clostridium acetobutylicum ATCC 824
1 T-box(Ala)

Clostridium difficile 630
2 T-box(Ala)

Clostridium butyricum 5521
1 T-box(Ala)

Clostridium bartlettii DSM 16795
1 T-box(Ala)

Clostridium hiranonis DSM 13275
2 T-box(Ala)

Clostridium beijerincki NCIMB 8052
1 T-box(Ala)

Clostridium botulinum A str. ATCC 3502
1 T-box(Ala)

Clostridium kluyveri DSM 555
2 T-box(Ala)

Clostridium novyi NT
2 T-box(Ala)

Clostridium perfringens ATCC 13124
1 T-box(Ala)

Clostridium tetani E88
Amino acid metabolism
RNA T-box(Arg)
1 T-box(Arg)

Clostridium sp. OhILAs
1 T-box(Arg)

Clostridium acetobutylicum ATCC 824
4 T-box(Arg)

Clostridium difficile 630
1 T-box(Arg)

Clostridium butyricum 5521
4 T-box(Arg)

Clostridium bartlettii DSM 16795
2 T-box(Arg)

Clostridium hiranonis DSM 13275
1 T-box(Arg)

Clostridium beijerincki NCIMB 8052
1 T-box(Arg)

Clostridium botulinum A str. ATCC 3502
1 T-box(Arg)

Clostridium novyi NT
1 T-box(Arg)

Clostridium perfringens ATCC 13124
1 T-box(Arg)

Clostridium tetani E88
Amino acid metabolism
RNA T-box(Asn)
1 T-box(Asn)

Clostridium sp. SS2/1
1 T-box(Asn)

Clostridium sp. L2-50
1 T-box(Asn)

Clostridium leptum DSM 753
1 T-box(Asn)

Clostridium sp. OhILAs
1 T-box(Asn)

Clostridium phytofermentans ISDg
1 T-box(Asn)

Clostridium acetobutylicum ATCC 824
2 T-box(Asn)

Clostridium difficile 630
1 T-box(Asn)

Clostridium bolteae ATCC BAA-613
3 T-box(Asn)

Clostridium bartlettii DSM 16795
1 T-box(Asn)

Clostridium hiranonis DSM 13275
1 T-box(Asn)

Clostridium beijerincki NCIMB 8052
1 T-box(Asn)

Clostridium scindens ATCC 35704
1 T-box(Asn)

Clostridium botulinum A str. ATCC 3502
2 T-box(Asn)

Clostridium kluyveri DSM 555
1 T-box(Asn)

Clostridium novyi NT
2 T-box(Asn)

Clostridium perfringens ATCC 13124
2 T-box(Asn)

Clostridium tetani E88
Amino acid metabolism
RNA T-box(Asp)
1 T-box(Asp)

Clostridium sp. OhILAs
1 T-box(Asp)

Clostridium cellulolyticum H10
1 T-box(Asp)

Clostridium acetobutylicum ATCC 824
1 T-box(Asp)

Clostridium botulinum A str. ATCC 3502
Amino acid metabolism
RNA T-box(Cys)
1 T-box(Cys)

Clostridium sp. SS2/1
1 T-box(Cys)

Clostridium sp. OhILAs
1 T-box(Cys)

Clostridium phytofermentans ISDg
3 T-box(Cys)

Clostridium acetobutylicum ATCC 824
1 T-box(Cys)

Clostridium butyricum 5521
1 T-box(Cys)

Clostridium nexile DSM 1787
1 T-box(Cys)

Clostridium beijerincki NCIMB 8052
1 T-box(Cys)

Clostridium scindens ATCC 35704
3 T-box(Cys)

Clostridium botulinum A str. ATCC 3502
2 T-box(Cys)

Clostridium kluyveri DSM 555
1 T-box(Cys)

Clostridium novyi NT
4 T-box(Cys)

Clostridium perfringens ATCC 13124
1 T-box(Cys)

Clostridium tetani E88
Amino acid metabolism
RNA T-box(Gly)
1 T-box(Gly)

Clostridium sp. OhILAs
1 T-box(Gly)

Clostridium phytofermentans ISDg
1 T-box(Gly)

Clostridium acetobutylicum ATCC 824
1 T-box(Gly)

Clostridium butyricum 5521
1 T-box(Gly)

Clostridium beijerincki NCIMB 8052
1 T-box(Gly)

Clostridium botulinum A str. ATCC 3502
1 T-box(Gly)

Clostridium kluyveri DSM 555
1 T-box(Gly)

Clostridium novyi NT
1 T-box(Gly)

Clostridium perfringens ATCC 13124
1 T-box(Gly)

Clostridium tetani E88
Amino acid metabolism
RNA T-box(His)
1 T-box(His)

Clostridium sp. OhILAs
1 T-box(His)

Clostridium difficile 630
1 T-box(His)

Clostridium hiranonis DSM 13275
Amino acid metabolism
RNA T-box(Ile)
1 T-box(Ile)

Clostridium sp. SS2/1
1 T-box(Ile)

Clostridium sp. L2-50
1 T-box(Ile)

Clostridium leptum DSM 753
1 T-box(Ile)

Clostridium cellulolyticum H10
1 T-box(Ile)

Clostridium phytofermentans ISDg
2 T-box(Ile)

Clostridium acetobutylicum ATCC 824
1 T-box(Ile)

Clostridium difficile 630
1 T-box(Ile)

Clostridium bolteae ATCC BAA-613
2 T-box(Ile)

Clostridium butyricum 5521
1 T-box(Ile)

Clostridium nexile DSM 1787
2 T-box(Ile)

Clostridium bartlettii DSM 16795
1 T-box(Ile)

Clostridium hiranonis DSM 13275
2 T-box(Ile)

Clostridium beijerincki NCIMB 8052
1 T-box(Ile)

Clostridium scindens ATCC 35704
1 T-box(Ile)

Clostridium botulinum A str. ATCC 3502
2 T-box(Ile)

Clostridium kluyveri DSM 555
3 T-box(Ile)

Clostridium novyi NT
2 T-box(Ile)

Clostridium perfringens ATCC 13124
2 T-box(Ile)

Clostridium tetani E88
Amino acid metabolism
RNA T-box(Leu)
1 T-box(Leu)

Clostridium sp. SS2/1
1 T-box(Leu)

Clostridium sp. L2-50
1 T-box(Leu)

Clostridium leptum DSM 753
1 T-box(Leu)

Clostridium sp. OhILAs
2 T-box(Leu)

Clostridium cellulolyticum H10
2 T-box(Leu)

Clostridium phytofermentans ISDg
2 T-box(Leu)

Clostridium acetobutylicum ATCC 824
2 T-box(Leu)

Clostridium difficile 630
1 T-box(Leu)

Clostridium bolteae ATCC BAA-613
2 T-box(Leu)

Clostridium butyricum 5521
1 T-box(Leu)

Clostridium nexile DSM 1787
1 T-box(Leu)

Clostridium bartlettii DSM 16795
1 T-box(Leu)

Clostridium hiranonis DSM 13275
1 T-box(Leu)

Clostridium beijerincki NCIMB 8052
1 T-box(Leu)

Clostridium scindens ATCC 35704
1 T-box(Leu)

Clostridium botulinum A str. ATCC 3502
5 T-box(Leu)

Clostridium kluyveri DSM 555
2 T-box(Leu)

Clostridium novyi NT
1 T-box(Leu)

Clostridium perfringens ATCC 13124
1 T-box(Leu)

Clostridium tetani E88
Amino acid metabolism
RNA T-box(Lys)
1 T-box(Lys)

Clostridium beijerincki NCIMB 8052
Amino acid metabolism
RNA T-box(Met)
4 T-box(Met)

Clostridium sp. OhILAs
1 T-box(Met)

Clostridium cellulolyticum H10
1 T-box(Met)

Clostridium phytofermentans ISDg
1 T-box(Met)

Clostridium acetobutylicum ATCC 824
1 T-box(Met)

Clostridium difficile 630
1 T-box(Met)

Clostridium butyricum 5521
1 T-box(Met)

Clostridium nexile DSM 1787
1 T-box(Met)

Clostridium bartlettii DSM 16795
1 T-box(Met)

Clostridium hiranonis DSM 13275
1 T-box(Met)

Clostridium beijerincki NCIMB 8052
1 T-box(Met)

Clostridium scindens ATCC 35704
1 T-box(Met)

Clostridium botulinum A str. ATCC 3502
1 T-box(Met)

Clostridium kluyveri DSM 555
1 T-box(Met)

Clostridium novyi NT
1 T-box(Met)

Clostridium perfringens ATCC 13124
1 T-box(Met)

Clostridium tetani E88
Amino acid metabolism
RNA T-box(Phe)
1 T-box(Phe)

Clostridium sp. SS2/1
1 T-box(Phe)

Clostridium sp. L2-50
1 T-box(Phe)

Clostridium leptum DSM 753
1 T-box(Phe)

Clostridium sp. OhILAs
1 T-box(Phe)

Clostridium cellulolyticum H10
1 T-box(Phe)

Clostridium phytofermentans ISDg
1 T-box(Phe)

Clostridium acetobutylicum ATCC 824
1 T-box(Phe)

Clostridium difficile 630
1 T-box(Phe)

Clostridium bolteae ATCC BAA-613
1 T-box(Phe)

Clostridium butyricum 5521
1 T-box(Phe)

Clostridium nexile DSM 1787
1 T-box(Phe)

Clostridium bartlettii DSM 16795
1 T-box(Phe)

Clostridium hiranonis DSM 13275
1 T-box(Phe)

Clostridium beijerincki NCIMB 8052
1 T-box(Phe)

Clostridium scindens ATCC 35704
1 T-box(Phe)

Clostridium botulinum A str. ATCC 3502
1 T-box(Phe)

Clostridium kluyveri DSM 555
1 T-box(Phe)

Clostridium novyi NT
1 T-box(Phe)

Clostridium perfringens ATCC 13124
2 T-box(Phe)

Clostridium tetani E88
Amino acid metabolism
RNA T-box(Pro)
1 T-box(Pro)

Clostridium sp. OhILAs
1 T-box(Pro)

Clostridium phytofermentans ISDg
1 T-box(Pro)

Clostridium acetobutylicum ATCC 824
1 T-box(Pro)

Clostridium difficile 630
1 T-box(Pro)

Clostridium bolteae ATCC BAA-613
1 T-box(Pro)

Clostridium butyricum 5521
1 T-box(Pro)

Clostridium nexile DSM 1787
1 T-box(Pro)

Clostridium bartlettii DSM 16795
1 T-box(Pro)

Clostridium hiranonis DSM 13275
1 T-box(Pro)

Clostridium beijerincki NCIMB 8052
1 T-box(Pro)

Clostridium scindens ATCC 35704
1 T-box(Pro)

Clostridium botulinum A str. ATCC 3502
1 T-box(Pro)

Clostridium kluyveri DSM 555
1 T-box(Pro)

Clostridium novyi NT
1 T-box(Pro)

Clostridium perfringens ATCC 13124
1 T-box(Pro)

Clostridium tetani E88
Amino acid metabolism
RNA T-box(Ser)
1 T-box(Ser)

Clostridium sp. OhILAs
1 T-box(Ser)

Clostridium cellulolyticum H10
1 T-box(Ser)

Clostridium phytofermentans ISDg
1 T-box(Ser)

Clostridium acetobutylicum ATCC 824
1 T-box(Ser)

Clostridium difficile 630
1 T-box(Ser)

Clostridium butyricum 5521
1 T-box(Ser)

Clostridium hiranonis DSM 13275
1 T-box(Ser)

Clostridium beijerincki NCIMB 8052
2 T-box(Ser)

Clostridium botulinum A str. ATCC 3502
1 T-box(Ser)

Clostridium kluyveri DSM 555
2 T-box(Ser)

Clostridium novyi NT
1 T-box(Ser)

Clostridium perfringens ATCC 13124
2 T-box(Ser)

Clostridium tetani E88
Amino acid metabolism
RNA T-box(Thr)
1 T-box(Thr)

Clostridium sp. SS2/1
1 T-box(Thr)

Clostridium sp. L2-50
1 T-box(Thr)

Clostridium leptum DSM 753
2 T-box(Thr)

Clostridium sp. OhILAs
1 T-box(Thr)

Clostridium cellulolyticum H10
2 T-box(Thr)

Clostridium phytofermentans ISDg
1 T-box(Thr)

Clostridium acetobutylicum ATCC 824
1 T-box(Thr)

Clostridium difficile 630
1 T-box(Thr)

Clostridium bolteae ATCC BAA-613
2 T-box(Thr)

Clostridium butyricum 5521
1 T-box(Thr)

Clostridium nexile DSM 1787
1 T-box(Thr)

Clostridium bartlettii DSM 16795
1 T-box(Thr)

Clostridium hiranonis DSM 13275
2 T-box(Thr)

Clostridium beijerincki NCIMB 8052
1 T-box(Thr)

Clostridium botulinum A str. ATCC 3502
1 T-box(Thr)

Clostridium novyi NT
1 T-box(Thr)

Clostridium perfringens ATCC 13124
1 T-box(Thr)

Clostridium tetani E88
Amino acid metabolism
RNA T-box(Trp)
2 T-box(Trp)

Clostridium sp. SS2/1
2 T-box(Trp)

Clostridium sp. L2-50
2 T-box(Trp)

Clostridium leptum DSM 753
3 T-box(Trp)

Clostridium sp. OhILAs
1 T-box(Trp)

Clostridium cellulolyticum H10
2 T-box(Trp)

Clostridium phytofermentans ISDg
3 T-box(Trp)

Clostridium acetobutylicum ATCC 824
2 T-box(Trp)

Clostridium difficile 630
2 T-box(Trp)

Clostridium bolteae ATCC BAA-613
3 T-box(Trp)

Clostridium butyricum 5521
2 T-box(Trp)

Clostridium nexile DSM 1787
3 T-box(Trp)

Clostridium bartlettii DSM 16795
2 T-box(Trp)

Clostridium hiranonis DSM 13275
2 T-box(Trp)

Clostridium beijerincki NCIMB 8052
1 T-box(Trp)

Clostridium scindens ATCC 35704
2 T-box(Trp)

Clostridium botulinum A str. ATCC 3502
3 T-box(Trp)

Clostridium kluyveri DSM 555
2 T-box(Trp)

Clostridium novyi NT
1 T-box(Trp)

Clostridium perfringens ATCC 13124
1 T-box(Trp)

Clostridium tetani E88
Amino acid metabolism
RNA T-box(Tyr)
1 T-box(Tyr)

Clostridium leptum DSM 753
1 T-box(Tyr)

Clostridium sp. OhILAs
2 T-box(Tyr)

Clostridium cellulolyticum H10
1 T-box(Tyr)

Clostridium phytofermentans ISDg
1 T-box(Tyr)

Clostridium acetobutylicum ATCC 824
1 T-box(Tyr)

Clostridium difficile 630
2 T-box(Tyr)

Clostridium bolteae ATCC BAA-613
1 T-box(Tyr)

Clostridium nexile DSM 1787
2 T-box(Tyr)

Clostridium bartlettii DSM 16795
1 T-box(Tyr)

Clostridium hiranonis DSM 13275
1 T-box(Tyr)

Clostridium beijerincki NCIMB 8052
1 T-box(Tyr)

Clostridium scindens ATCC 35704
1 T-box(Tyr)

Clostridium novyi NT
Amino acid metabolism
RNA T-box(Val)
2 T-box(Val)

Clostridium sp. L2-50
1 T-box(Val)

Clostridium sp. OhILAs
1 T-box(Val)

Clostridium cellulolyticum H10
2 T-box(Val)

Clostridium phytofermentans ISDg
2 T-box(Val)

Clostridium acetobutylicum ATCC 824
1 T-box(Val)

Clostridium difficile 630
1 T-box(Val)

Clostridium butyricum 5521
1 T-box(Val)

Clostridium nexile DSM 1787
1 T-box(Val)

Clostridium bartlettii DSM 16795
1 T-box(Val)

Clostridium hiranonis DSM 13275
2 T-box(Val)

Clostridium beijerincki NCIMB 8052
2 T-box(Val)

Clostridium scindens ATCC 35704
1 T-box(Val)

Clostridium botulinum A str. ATCC 3502
1 T-box(Val)

Clostridium kluyveri DSM 555
1 T-box(Val)

Clostridium novyi NT
1 T-box(Val)

Clostridium perfringens ATCC 13124
1 T-box(Val)

Clostridium tetani E88
Amino acid metabolism
RF00234 RNA glmS
1 glmS

Clostridium sp. SS2/1
1 glmS

Clostridium sp. L2-50
1 glmS

Clostridium sp. OhILAs
1 glmS

Clostridium cellulolyticum H10
1 glmS

Clostridium phytofermentans ISDg
1 glmS

Clostridium acetobutylicum ATCC 824
1 glmS

Clostridium difficile 630
1 glmS

Clostridium bolteae ATCC BAA-613
1 glmS

Clostridium butyricum 5521
1 glmS

Clostridium bartlettii DSM 16795
1 glmS

Clostridium hiranonis DSM 13275
1 glmS

Clostridium beijerincki NCIMB 8052
1 glmS

Clostridium botulinum A str. ATCC 3502
1 glmS

Clostridium kluyveri DSM 555
1 glmS

Clostridium novyi NT
1 glmS

Clostridium perfringens ATCC 13124
1 glmS

Clostridium tetani E88
Amino sugar metabolism
RF00379 RNA ydaO-yuaA
1 ydaO-yuaA

Clostridium sp. OhILAs
4 ydaO-yuaA

Clostridium cellulolyticum H10
1 ydaO-yuaA

Clostridium phytofermentans ISDg
2 ydaO-yuaA

Clostridium acetobutylicum ATCC 824
1 ydaO-yuaA

Clostridium bolteae ATCC BAA-613
2 ydaO-yuaA

Clostridium beijerincki NCIMB 8052
2 ydaO-yuaA

Clostridium botulinum A str. ATCC 3502
2 ydaO-yuaA

Clostridium kluyveri DSM 555
1 ydaO-yuaA

Clostridium novyi NT
2 ydaO-yuaA

Clostridium tetani E88
Cell wall metabolism; Osmotic stress response
RF00380 RNA ykoK
1 ykoK

Clostridium cellulolyticum H10
2 ykoK

Clostridium acetobutylicum ATCC 824
1 ykoK

Clostridium butyricum 5521
1 ykoK

Clostridium nexile DSM 1787
1 ykoK

Clostridium beijerincki NCIMB 8052
2 ykoK

Clostridium botulinum A str. ATCC 3502
1 ykoK

Clostridium kluyveri DSM 555
1 ykoK

Clostridium perfringens ATCC 13124
Magnesium homeostasis
RF00442 RNA ykkC-yxkD
2 ykkC-yxkD

Clostridium sp. OhILAs
1 ykkC-yxkD

Clostridium cellulolyticum H10
2 ykkC-yxkD

Clostridium difficile 630
1 ykkC-yxkD

Clostridium butyricum 5521
1 ykkC-yxkD

Clostridium bartlettii DSM 16795
1 ykkC-yxkD

Clostridium beijerincki NCIMB 8052
1 ykkC-yxkD

Clostridium botulinum A str. ATCC 3502
1 ykkC-yxkD

Clostridium kluyveri DSM 555
1 ykkC-yxkD

Clostridium perfringens ATCC 13124
Multidrug resistance
RF00504 RNA Glycine
1 Glycine

Clostridium sp. SS2/1
1 Glycine

Clostridium leptum DSM 753
2 Glycine

Clostridium sp. OhILAs
1 Glycine

Clostridium cellulolyticum H10
1 Glycine

Clostridium acetobutylicum ATCC 824
3 Glycine

Clostridium difficile 630
3 Glycine

Clostridium bolteae ATCC BAA-613
1 Glycine

Clostridium butyricum 5521
1 Glycine

Clostridium nexile DSM 1787
2 Glycine

Clostridium bartlettii DSM 16795
3 Glycine

Clostridium hiranonis DSM 13275
2 Glycine

Clostridium beijerincki NCIMB 8052
2 Glycine

Clostridium scindens ATCC 35704
1 Glycine

Clostridium botulinum A str. ATCC 3502
3 Glycine

Clostridium kluyveri DSM 555
1 Glycine

Clostridium novyi NT
1 Glycine

Clostridium perfringens ATCC 13124
2 Glycine

Clostridium tetani E88
Glycine metabolism
RF00515 RNA PyrR
3 PyrR

Clostridium sp. OhILAs
2 PyrR

Clostridium cellulolyticum H10
3 PyrR

Clostridium acetobutylicum ATCC 824
2 PyrR

Clostridium difficile 630
4 PyrR

Clostridium butyricum 5521
3 PyrR

Clostridium bartlettii DSM 16795
2 PyrR

Clostridium hiranonis DSM 13275
3 PyrR

Clostridium beijerincki NCIMB 8052
5 PyrR

Clostridium botulinum A str. ATCC 3502
3 PyrR

Clostridium kluyveri DSM 555
3 PyrR

Clostridium novyi NT
4 PyrR

Clostridium perfringens ATCC 13124
3 PyrR

Clostridium tetani E88
Pyrimidine metabolism
RF00522 RNA PreQ1
1 PreQ1

Clostridium sp. L2-50
1 PreQ1

Clostridium sp. OhILAs
1 PreQ1

Clostridium cellulolyticum H10
1 PreQ1

Clostridium phytofermentans ISDg
2 PreQ1

Clostridium acetobutylicum ATCC 824
1 PreQ1

Clostridium difficile 630
1 PreQ1

Clostridium bolteae ATCC BAA-613
1 PreQ1

Clostridium butyricum 5521
2 PreQ1

Clostridium nexile DSM 1787
1 PreQ1

Clostridium hiranonis DSM 13275
2 PreQ1

Clostridium beijerincki NCIMB 8052
1 PreQ1

Clostridium scindens ATCC 35704
2 PreQ1

Clostridium botulinum A str. ATCC 3502
1 PreQ1

Clostridium kluyveri DSM 555
2 PreQ1

Clostridium novyi NT
2 PreQ1

Clostridium perfringens ATCC 13124
1 PreQ1

Clostridium tetani E88
Queuosine biosynthesis
RF00556 RNA L19_leader
1 L19_leader

Clostridium sp. SS2/1
1 L19_leader

Clostridium sp. L2-50
1 L19_leader

Clostridium leptum DSM 753
1 L19_leader

Clostridium sp. OhILAs
1 L19_leader

Clostridium cellulolyticum H10
1 L19_leader

Clostridium acetobutylicum ATCC 824
1 L19_leader

Clostridium difficile 630
1 L19_leader

Clostridium butyricum 5521
1 L19_leader

Clostridium nexile DSM 1787
1 L19_leader

Clostridium bartlettii DSM 16795
1 L19_leader

Clostridium beijerincki NCIMB 8052
1 L19_leader

Clostridium scindens ATCC 35704
1 L19_leader

Clostridium botulinum A str. ATCC 3502
1 L19_leader

Clostridium kluyveri DSM 555
1 L19_leader

Clostridium novyi NT
1 L19_leader

Clostridium perfringens ATCC 13124
1 L19_leader

Clostridium tetani E88
Ribosome biogenesis
RF00557 RNA L10_leader
1 L10_leader

Clostridium sp. SS2/1
1 L10_leader

Clostridium sp. L2-50
1 L10_leader

Clostridium leptum DSM 753
1 L10_leader

Clostridium sp. OhILAs
1 L10_leader

Clostridium cellulolyticum H10
1 L10_leader

Clostridium phytofermentans ISDg
1 L10_leader

Clostridium acetobutylicum ATCC 824
1 L10_leader

Clostridium difficile 630
1 L10_leader

Clostridium bolteae ATCC BAA-613
1 L10_leader

Clostridium nexile DSM 1787
1 L10_leader

Clostridium bartlettii DSM 16795
1 L10_leader

Clostridium hiranonis DSM 13275
1 L10_leader

Clostridium beijerincki NCIMB 8052
1 L10_leader

Clostridium scindens ATCC 35704
1 L10_leader

Clostridium botulinum A str. ATCC 3502
1 L10_leader

Clostridium kluyveri DSM 555
1 L10_leader

Clostridium novyi NT
1 L10_leader

Clostridium perfringens ATCC 13124
1 L10_leader

Clostridium tetani E88
Ribosome biogenesis
RF00558 RNA L20_leader
1 L20_leader

Clostridium sp. SS2/1
1 L20_leader

Clostridium sp. L2-50
1 L20_leader

Clostridium leptum DSM 753
1 L20_leader

Clostridium sp. OhILAs
1 L20_leader

Clostridium cellulolyticum H10
1 L20_leader

Clostridium phytofermentans ISDg
1 L20_leader

Clostridium acetobutylicum ATCC 824
1 L20_leader

Clostridium difficile 630
1 L20_leader

Clostridium bolteae ATCC BAA-613
1 L20_leader

Clostridium nexile DSM 1787
1 L20_leader

Clostridium bartlettii DSM 16795
1 L20_leader

Clostridium hiranonis DSM 13275
1 L20_leader

Clostridium beijerincki NCIMB 8052
1 L20_leader

Clostridium scindens ATCC 35704
1 L20_leader

Clostridium botulinum A str. ATCC 3502
1 L20_leader

Clostridium kluyveri DSM 555
1 L20_leader

Clostridium novyi NT
1 L20_leader

Clostridium perfringens ATCC 13124
1 L20_leader

Clostridium tetani E88
Ribosome biogenesis
RF00559 RNA L21_leader
1 L21_leader

Clostridium sp. L2-50
1 L21_leader

Clostridium leptum DSM 753
1 L21_leader

Clostridium sp. OhILAs
1 L21_leader

Clostridium acetobutylicum ATCC 824
1 L21_leader

Clostridium difficile 630
1 L21_leader

Clostridium butyricum 5521
1 L21_leader

Clostridium nexile DSM 1787
1 L21_leader

Clostridium bartlettii DSM 16795
1 L21_leader

Clostridium hiranonis DSM 13275
1 L21_leader

Clostridium scindens ATCC 35704
1 L21_leader

Clostridium botulinum A str. ATCC 3502
1 L21_leader

Clostridium kluyveri DSM 555
1 L21_leader

Clostridium novyi NT
1 L21_leader

Clostridium perfringens ATCC 13124
1 L21_leader

Clostridium tetani E88
Ribosome biogenesis
RF01051 RNA GEMM_RNA_motif
3 GEMM_RNA_motif

Clostridium sp. SS2/1
1 GEMM_RNA_motif

Clostridium sp. OhILAs
2 GEMM_RNA_motif

Clostridium phytofermentans ISDg
6 GEMM_RNA_motif

Clostridium difficile 630
4 GEMM_RNA_motif

Clostridium bolteae ATCC BAA-613
2 GEMM_RNA_motif

Clostridium butyricum 5521
1 GEMM_RNA_motif

Clostridium nexile DSM 1787
4 GEMM_RNA_motif

Clostridium beijerincki NCIMB 8052
2 GEMM_RNA_motif

Clostridium kluyveri DSM 555
1 GEMM_RNA_motif

Clostridium novyi NT
2 GEMM_RNA_motif

Clostridium perfringens ATCC 13124
1 GEMM_RNA_motif

Clostridium tetani E88
Second messenger response
RF01055 RNA MOCO_RNA_motif
1 MOCO_RNA_motif

Clostridium sp. OhILAs
1 MOCO_RNA_motif

Clostridium butyricum 5521
1 MOCO_RNA_motif

Clostridium bartlettii DSM 16795
2 MOCO_RNA_motif

Clostridium scindens ATCC 35704
1 MOCO_RNA_motif

Clostridium perfringens ATCC 13124
Molybdopterin biosynthesis; Molybdenum homeostasis
RF01831 RNA THF
1 THF

Clostridium sp. OhILAs
1 THF

Clostridium cellulolyticum H10
1 THF

Clostridium acetobutylicum ATCC 824
1 THF

Clostridium bolteae ATCC BAA-613
1 THF

Clostridium nexile DSM 1787
1 THF

Clostridium scindens ATCC 35704
1 THF

Clostridium botulinum A str. ATCC 3502
2 THF

Clostridium kluyveri DSM 555
1 THF

Clostridium novyi NT
1 THF

Clostridium tetani E88
Folate metabolism