Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Collection of regulogs in Moraxellaceae taxonomic group

General statistics
Genomes 4
TF regulogs 29
TF regulons 58
TF binding sites 159
RNA regulogs 4
RNA regulons 8
RNA sites 9

This collection involves all regulons that were tentatively predicted by applying integrative comparative genomic approach to a single taxonomic group of closely-related genomes. To infer the regulons operated by transcription factors (TFs), we combined the identification of TF binding sites and cross-genome comparison of regulons with the analysis of the genomic and functional context of candidate target genes. To infer the regulons operated by regulatory RNAs such as riboswitches, we identified candidate RNA regulatory elements using HMM profiles and further analyzed their genomic and functional context.

Studied genomes and reconstructed regulon statistics
TF RNA Total
Genomes Regulons Sites Regulons Sites Regulons Sites
Acinetobacter baumannii AB0057 25 57 3 3 28 60
Acinetobacter sp. ADP1 18 59 3 3 21 62
Psychrobacter arcticum 273-4 7 14 1 1 8 15
Psychrobacter sp. PRwf-1 8 29 1 2 9 31
Genomic distribution of regulons
Family Type Regulator Function
FUR TF Zur
11 Zur

Acinetobacter sp. ADP1
7 Zur

Acinetobacter baumannii AB0057
3 Zur

Psychrobacter arcticum 273-4
7 Zur

Psychrobacter sp. PRwf-1
Zinc homeostasis
Fis TF NtrC
6 NtrC

Acinetobacter sp. ADP1
4 NtrC

Acinetobacter baumannii AB0057
2 NtrC

Psychrobacter arcticum 273-4
3 NtrC

Psychrobacter sp. PRwf-1
Nitrogen assimilation
GntR/MocR TF AB57_0242
1 AB57_0242

Acinetobacter baumannii AB0057
TF AB57_2651
1 AB57_2651

Acinetobacter baumannii AB0057
Metabolite transport
TF ACIAD1897
1 ACIAD1897

Acinetobacter sp. ADP1
1 ACIAD1897

Acinetobacter baumannii AB0057
TF ACIAD3613
1 ACIAD3613

Acinetobacter sp. ADP1
1 ACIAD3613

Acinetobacter baumannii AB0057
TF GabR
2 GabR

Acinetobacter sp. ADP1
1 GabR

Acinetobacter baumannii AB0057
Gamma-aminobutyrate utilization
TF PdxW2
1 PdxW2

Acinetobacter baumannii AB0057
Pyridoxine/pyridoxal homeostasis
TF YdcR
1 YdcR

Acinetobacter sp. ADP1
2 YdcR

Acinetobacter baumannii AB0057
GntR/Others TF AB57_1945
1 AB57_1945

Acinetobacter baumannii AB0057
Alkanesulfonates utilization
TF HutC
3 HutC

Acinetobacter baumannii AB0057
3 HutC

Psychrobacter sp. PRwf-1
Histidine utilization
TF LldR
1 LldR

Acinetobacter sp. ADP1
1 LldR

Acinetobacter baumannii AB0057
Lactate utilization
TF MdcY
2 MdcY

Psychrobacter arcticum 273-4
Malonate metabolism
TF PhnR
2 PhnR

Acinetobacter baumannii AB0057
Phosphonate utilization; 2-aminoethylphosphonate utilization
TF PrpR
1 PrpR

Acinetobacter sp. ADP1
1 PrpR

Acinetobacter baumannii AB0057
Methylcitrate utilization
TF UreR
3 UreR

Acinetobacter sp. ADP1
TF VanR
2 VanR

Acinetobacter sp. ADP1
2 VanR

Acinetobacter baumannii AB0057
Vanillate utilization
MerR TF CadR-PbrR
1 CadR-PbrR

Acinetobacter sp. ADP1
2 CadR-PbrR

Acinetobacter baumannii AB0057
Lead resistance; Cadmium resistance
TF CueR
2 CueR

Acinetobacter baumannii AB0057
Copper resistance
TF SoxR
1 SoxR

Acinetobacter sp. ADP1
1 SoxR

Acinetobacter baumannii AB0057
Superoxide stress response
ModE TF ModE
1 ModE

Acinetobacter baumannii AB0057
Molybdenum homeostasis
NadQ TF NadQ
3 NadQ

Psychrobacter arcticum 273-4
3 NadQ

Psychrobacter sp. PRwf-1
NAD biosynthesis
NrdR TF NrdR
1 NrdR

Acinetobacter sp. ADP1
1 NrdR

Acinetobacter baumannii AB0057
1 NrdR

Psychrobacter arcticum 273-4
1 NrdR

Psychrobacter sp. PRwf-1
Deoxyribonucleotide biosynthesis
NrtR TF NrtR
1 NrtR

Acinetobacter sp. ADP1
1 NrtR

Acinetobacter baumannii AB0057
NAD biosynthesis
Rrf2 TF IscR
1 IscR

Acinetobacter sp. ADP1
1 IscR

Acinetobacter baumannii AB0057
1 IscR

Psychrobacter arcticum 273-4
1 IscR

Psychrobacter sp. PRwf-1
Iron-sulfur cluster biogenesis
TF NsrR
1 NsrR

Acinetobacter sp. ADP1
1 NsrR

Acinetobacter baumannii AB0057
3 NsrR

Psychrobacter sp. PRwf-1
Nitrosative stress response
TetR TF FabR
3 FabR

Acinetobacter sp. ADP1
3 FabR

Acinetobacter baumannii AB0057
Fatty acid biosynthesis
TF RutR
4 RutR

Acinetobacter sp. ADP1
1 RutR

Acinetobacter baumannii AB0057
Pyrimidine utilization
TrpR TF TrpR
1 TrpR

Psychrobacter arcticum 273-4
2 TrpR

Psychrobacter sp. PRwf-1
Tryptophan biosynthesis
RF00050 RNA FMN
1 FMN

Acinetobacter sp. ADP1
1 FMN

Acinetobacter baumannii AB0057
Riboflavin biosynthesis
RF00059 RNA TPP
1 TPP

Acinetobacter sp. ADP1
1 TPP

Acinetobacter baumannii AB0057
1 TPP

Psychrobacter arcticum 273-4
2 TPP

Psychrobacter sp. PRwf-1
Thiamine biosynthesis
RF01055 RNA MOCO_RNA_motif
RF01057 RNA SAH_riboswitch
1 SAH_riboswitch

Acinetobacter sp. ADP1
1 SAH_riboswitch

Acinetobacter baumannii AB0057
Methionine metabolism