Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Collection of regulogs in Pseudomonadaceae taxonomic group

General statistics
Genomes 8
TF regulogs 71
TF regulons 338
TF binding sites 1230
RNA regulogs 9
RNA regulons 58
RNA sites 92

This collection involves all regulons that were tentatively predicted by applying integrative comparative genomic approach to a single taxonomic group of closely-related genomes. To infer the regulons operated by transcription factors (TFs), we combined the identification of TF binding sites and cross-genome comparison of regulons with the analysis of the genomic and functional context of candidate target genes. To infer the regulons operated by regulatory RNAs such as riboswitches, we identified candidate RNA regulatory elements using HMM profiles and further analyzed their genomic and functional context.

Studied genomes and reconstructed regulon statistics
TF RNA Total
Genomes Regulons Sites Regulons Sites Regulons Sites
Azotobacter vinelandii AvOP 32 87 6 6 38 93
Pseudomonas aeruginosa PAO1 49 173 7 13 56 186
Pseudomonas entomophila L48 44 180 7 12 51 192
Pseudomonas fluorescens Pf-5 53 192 7 12 60 204
Pseudomonas mendocina ymp 43 171 8 15 51 186
Pseudomonas putida KT2440 48 189 6 10 54 199
Pseudomonas stutzeri A1501 26 104 9 12 35 116
Pseudomonas syringae pv. tomato str. DC3000 43 134 8 12 51 146
Genomic distribution of regulons
Family Type Regulator Function
ArsR TF SahR
1 SahR

Pseudomonas aeruginosa PAO1
1 SahR

Pseudomonas entomophila L48
1 SahR

Pseudomonas putida KT2440
1 SahR

Pseudomonas syringae pv. tomato str. DC3000
1 SahR

Pseudomonas fluorescens Pf-5
1 SahR

Pseudomonas mendocina ymp
1 SahR

Pseudomonas stutzeri A1501
1 SahR

Azotobacter vinelandii AvOP
Methionine metabolism
BirA TF BirA
1 BirA

Pseudomonas aeruginosa PAO1
2 BirA

Pseudomonas entomophila L48
2 BirA

Pseudomonas putida KT2440
2 BirA

Pseudomonas syringae pv. tomato str. DC3000
2 BirA

Pseudomonas fluorescens Pf-5
2 BirA

Pseudomonas mendocina ymp
2 BirA

Pseudomonas stutzeri A1501
2 BirA

Azotobacter vinelandii AvOP
Biotin biosynthesis
FUR TF Zur
10 Zur

Pseudomonas aeruginosa PAO1
9 Zur

Pseudomonas entomophila L48
8 Zur

Pseudomonas putida KT2440
6 Zur

Pseudomonas syringae pv. tomato str. DC3000
10 Zur

Pseudomonas fluorescens Pf-5
5 Zur

Pseudomonas mendocina ymp
6 Zur

Pseudomonas stutzeri A1501
7 Zur

Azotobacter vinelandii AvOP
Zinc homeostasis
Fis TF NorR
2 NorR

Pseudomonas aeruginosa PAO1
3 NorR

Pseudomonas entomophila L48
3 NorR

Pseudomonas putida KT2440
3 NorR

Pseudomonas fluorescens Pf-5
2 NorR

Pseudomonas mendocina ymp
2 NorR

Azotobacter vinelandii AvOP
Nitrosative stress response
TF NtrC
4 NtrC

Pseudomonas aeruginosa PAO1
5 NtrC

Pseudomonas entomophila L48
5 NtrC

Pseudomonas putida KT2440
5 NtrC

Pseudomonas syringae pv. tomato str. DC3000
6 NtrC

Pseudomonas fluorescens Pf-5
4 NtrC

Pseudomonas mendocina ymp
3 NtrC

Pseudomonas stutzeri A1501
4 NtrC

Azotobacter vinelandii AvOP
Nitrogen assimilation
GntR/MocR TF EutR
3 EutR

Pseudomonas putida KT2440
Ectoine utilization
TF GabR2
1 GabR2

Pseudomonas entomophila L48
1 GabR2

Pseudomonas putida KT2440
Gamma-aminobutyrate utilization
TF PA0268
1 PA0268

Pseudomonas aeruginosa PAO1
1 PA0268

Pseudomonas entomophila L48
1 PA0268

Pseudomonas mendocina ymp
TF PA2100
1 PA2100

Pseudomonas aeruginosa PAO1
1 PA2100

Pseudomonas fluorescens Pf-5
Multidrug efflux
TF PFL_2191
1 PFL_2191

Pseudomonas fluorescens Pf-5
TF PP0486
2 PP0486

Pseudomonas entomophila L48
2 PP0486

Pseudomonas putida KT2440
2 PP0486

Pseudomonas fluorescens Pf-5
Metabolite transport
TF PP2642
1 PP2642

Pseudomonas putida KT2440
TF PP2948
1 PP2948

Pseudomonas putida KT2440
1 PP2948

Azotobacter vinelandii AvOP
TF PdxQ3
2 PdxQ3

Pseudomonas fluorescens Pf-5
1 PdxQ3

Pseudomonas mendocina ymp
Metabolite transport; Pyridoxine/pyridoxal homeostasis
TF PdxR
1 PdxR

Pseudomonas aeruginosa PAO1
2 PdxR

Pseudomonas fluorescens Pf-5
Pyridoxine/pyridoxal homeostasis
TF PdxW2
1 PdxW2

Pseudomonas aeruginosa PAO1
1 PdxW2

Pseudomonas entomophila L48
1 PdxW2

Pseudomonas putida KT2440
1 PdxW2

Pseudomonas syringae pv. tomato str. DC3000
1 PdxW2

Pseudomonas fluorescens Pf-5
1 PdxW2

Pseudomonas mendocina ymp
Pyridoxine biosynthesis
TF YdcR
2 YdcR

Pseudomonas aeruginosa PAO1
1 YdcR

Pseudomonas entomophila L48
1 YdcR

Pseudomonas putida KT2440
4 YdcR

Pseudomonas fluorescens Pf-5
1 YdcR

Pseudomonas mendocina ymp
1 YdcR

Pseudomonas stutzeri A1501
TF YjiR
1 YjiR

Pseudomonas aeruginosa PAO1
1 YjiR

Pseudomonas entomophila L48
1 YjiR

Pseudomonas putida KT2440
1 YjiR

Pseudomonas syringae pv. tomato str. DC3000
1 YjiR

Pseudomonas fluorescens Pf-5
1 YjiR

Pseudomonas mendocina ymp
GntR/Others TF GguR
4 GguR

Pseudomonas entomophila L48
5 GguR

Pseudomonas putida KT2440
4 GguR

Pseudomonas syringae pv. tomato str. DC3000
5 GguR

Pseudomonas mendocina ymp
2 GguR

Azotobacter vinelandii AvOP
Glucuronate utilization; Glucarate utilization; Galacturonate utilization; Galactarate utilization
TF GlcC
2 GlcC

Pseudomonas aeruginosa PAO1
2 GlcC

Pseudomonas putida KT2440
2 GlcC

Pseudomonas fluorescens Pf-5
2 GlcC

Pseudomonas mendocina ymp
2 GlcC

Pseudomonas stutzeri A1501
2 GlcC

Azotobacter vinelandii AvOP
Glycolate utilization
TF HpxS
1 HpxS

Pseudomonas syringae pv. tomato str. DC3000
Allantoin utilization
TF HutC
3 HutC

Pseudomonas aeruginosa PAO1
4 HutC

Pseudomonas entomophila L48
3 HutC

Pseudomonas putida KT2440
3 HutC

Pseudomonas syringae pv. tomato str. DC3000
3 HutC

Pseudomonas fluorescens Pf-5
2 HutC

Pseudomonas mendocina ymp
Histidine utilization
TF HypR
3 HypR

Pseudomonas aeruginosa PAO1
Proline and 4-hydrohyproline utilization
TF LldR
2 LldR

Pseudomonas aeruginosa PAO1
2 LldR

Pseudomonas entomophila L48
2 LldR

Pseudomonas putida KT2440
2 LldR

Pseudomonas fluorescens Pf-5
2 LldR

Pseudomonas mendocina ymp
2 LldR

Pseudomonas stutzeri A1501
2 LldR

Azotobacter vinelandii AvOP
Lactate utilization
TF NagQ
1 NagQ

Pseudomonas aeruginosa PAO1
1 NagQ

Pseudomonas fluorescens Pf-5
N-acetylglucosamine utilization
TF PA1520
10 PA1520

Pseudomonas aeruginosa PAO1
9 PA1520

Pseudomonas entomophila L48
8 PA1520

Pseudomonas putida KT2440
3 PA1520

Pseudomonas syringae pv. tomato str. DC3000
8 PA1520

Pseudomonas fluorescens Pf-5
10 PA1520

Pseudomonas mendocina ymp
5 PA1520

Pseudomonas stutzeri A1501
Xanthine utilization; Allantoin utilization
TF PA2299
1 PA2299

Pseudomonas aeruginosa PAO1
1 PA2299

Pseudomonas entomophila L48
1 PA2299

Pseudomonas putida KT2440
Alkanesulfonates utilization
TF PSPTO1352
1 PSPTO1352

Pseudomonas syringae pv. tomato str. DC3000
1 PSPTO1352

Pseudomonas mendocina ymp
TF PSPTO5027
3 PSPTO5027

Pseudomonas syringae pv. tomato str. DC3000
1 PSPTO5027

Pseudomonas fluorescens Pf-5
TF PhnF
1 PhnF

Pseudomonas aeruginosa PAO1
1 PhnF

Pseudomonas syringae pv. tomato str. DC3000
1 PhnF

Pseudomonas mendocina ymp
Phosphonate utilization
TF PhnR
6 PhnR

Pseudomonas aeruginosa PAO1
2 PhnR

Pseudomonas entomophila L48
2 PhnR

Pseudomonas putida KT2440
2 PhnR

Pseudomonas syringae pv. tomato str. DC3000
2 PhnR

Pseudomonas fluorescens Pf-5
3 PhnR

Pseudomonas mendocina ymp
Phosphonate utilization; 2-aminoethylphosphonate utilization
TF PrpR
1 PrpR

Pseudomonas aeruginosa PAO1
1 PrpR

Pseudomonas entomophila L48
1 PrpR

Pseudomonas putida KT2440
1 PrpR

Pseudomonas syringae pv. tomato str. DC3000
2 PrpR

Pseudomonas fluorescens Pf-5
1 PrpR

Pseudomonas mendocina ymp
1 PrpR

Pseudomonas stutzeri A1501
1 PrpR

Azotobacter vinelandii AvOP
Methylcitrate utilization
TF SdaR
2 SdaR

Pseudomonas entomophila L48
3 SdaR

Pseudomonas syringae pv. tomato str. DC3000
2 SdaR

Pseudomonas fluorescens Pf-5
1 SdaR

Azotobacter vinelandii AvOP
Glucarate utilization; Galactarate utilization
TF TreR
2 TreR

Pseudomonas fluorescens Pf-5
Trehalose utilization
TF UreR
1 UreR

Pseudomonas aeruginosa PAO1
1 UreR

Pseudomonas entomophila L48
1 UreR

Pseudomonas putida KT2440
2 UreR

Pseudomonas syringae pv. tomato str. DC3000
1 UreR

Pseudomonas fluorescens Pf-5
2 UreR

Pseudomonas mendocina ymp
TF VanR
2 VanR

Pseudomonas aeruginosa PAO1
2 VanR

Pseudomonas putida KT2440
1 VanR

Pseudomonas syringae pv. tomato str. DC3000
2 VanR

Pseudomonas fluorescens Pf-5
Vanillate utilization
IclR TF HmgR
2 HmgR

Pseudomonas aeruginosa PAO1
2 HmgR

Pseudomonas entomophila L48
2 HmgR

Pseudomonas putida KT2440
3 HmgR

Pseudomonas syringae pv. tomato str. DC3000
2 HmgR

Pseudomonas fluorescens Pf-5
Tyrosine degradation
LacI TF FruR
2 FruR

Pseudomonas aeruginosa PAO1
2 FruR

Pseudomonas entomophila L48
2 FruR

Pseudomonas putida KT2440
2 FruR

Pseudomonas syringae pv. tomato str. DC3000
2 FruR

Pseudomonas fluorescens Pf-5
2 FruR

Pseudomonas mendocina ymp
2 FruR

Pseudomonas stutzeri A1501
2 FruR

Azotobacter vinelandii AvOP
Fructose utilization
TF GntR
3 GntR

Pseudomonas aeruginosa PAO1
3 GntR

Pseudomonas entomophila L48
3 GntR

Pseudomonas putida KT2440
3 GntR

Pseudomonas syringae pv. tomato str. DC3000
3 GntR

Pseudomonas fluorescens Pf-5
1 GntR

Pseudomonas mendocina ymp
1 GntR

Pseudomonas stutzeri A1501
4 GntR

Azotobacter vinelandii AvOP
Gluconate utilization
TF PFL_0254
1 PFL_0254

Pseudomonas syringae pv. tomato str. DC3000
2 PFL_0254

Pseudomonas fluorescens Pf-5
1 PFL_0254

Azotobacter vinelandii AvOP
Sugar utilization
TF PSPTO0485
1 PSPTO0485

Pseudomonas syringae pv. tomato str. DC3000
Sugar utilization
TF PtxS
2 PtxS

Pseudomonas aeruginosa PAO1
3 PtxS

Pseudomonas putida KT2440
2 PtxS

Pseudomonas fluorescens Pf-5
3 PtxS

Azotobacter vinelandii AvOP
2-ketogluconate utilization
TF RbsR
1 RbsR

Pseudomonas aeruginosa PAO1
1 RbsR

Pseudomonas entomophila L48
1 RbsR

Pseudomonas putida KT2440
1 RbsR

Pseudomonas syringae pv. tomato str. DC3000
1 RbsR

Pseudomonas fluorescens Pf-5
Ribose utilization
TF ScrR
2 ScrR

Pseudomonas syringae pv. tomato str. DC3000
2 ScrR

Pseudomonas fluorescens Pf-5
2 ScrR

Azotobacter vinelandii AvOP
Sucrose utilization
LexA TF LexA
11 LexA

Pseudomonas aeruginosa PAO1
14 LexA

Pseudomonas entomophila L48
16 LexA

Pseudomonas putida KT2440
11 LexA

Pseudomonas syringae pv. tomato str. DC3000
12 LexA

Pseudomonas fluorescens Pf-5
12 LexA

Pseudomonas mendocina ymp
12 LexA

Pseudomonas stutzeri A1501
5 LexA

Azotobacter vinelandii AvOP
SOS response
TF LexA2
1 LexA2

Pseudomonas entomophila L48
2 LexA2

Pseudomonas putida KT2440
1 LexA2

Pseudomonas syringae pv. tomato str. DC3000
1 LexA2

Pseudomonas fluorescens Pf-5
SOS response
LysR TF HmgQ
2 HmgQ

Azotobacter vinelandii AvOP
Tyrosine degradation
TF MetR
3 MetR

Pseudomonas aeruginosa PAO1
6 MetR

Pseudomonas entomophila L48
6 MetR

Pseudomonas putida KT2440
3 MetR

Pseudomonas syringae pv. tomato str. DC3000
4 MetR

Pseudomonas fluorescens Pf-5
3 MetR

Pseudomonas mendocina ymp
3 MetR

Pseudomonas stutzeri A1501
2 MetR

Azotobacter vinelandii AvOP
Methionine biosynthesis
MerR TF CadR-PbrR
1 CadR-PbrR

Pseudomonas aeruginosa PAO1
2 CadR-PbrR

Pseudomonas entomophila L48
2 CadR-PbrR

Pseudomonas putida KT2440
1 CadR-PbrR

Pseudomonas syringae pv. tomato str. DC3000
1 CadR-PbrR

Pseudomonas fluorescens Pf-5
2 CadR-PbrR

Pseudomonas mendocina ymp
3 CadR-PbrR

Pseudomonas stutzeri A1501
2 CadR-PbrR

Azotobacter vinelandii AvOP
Lead resistance; Cadmium resistance
TF CueR
2 CueR

Pseudomonas aeruginosa PAO1
2 CueR

Pseudomonas entomophila L48
3 CueR

Pseudomonas putida KT2440
2 CueR

Pseudomonas syringae pv. tomato str. DC3000
2 CueR

Pseudomonas fluorescens Pf-5
3 CueR

Pseudomonas mendocina ymp
4 CueR

Pseudomonas stutzeri A1501
1 CueR

Azotobacter vinelandii AvOP
Copper resistance
TF LiuR
2 LiuR

Pseudomonas aeruginosa PAO1
3 LiuR

Pseudomonas entomophila L48
3 LiuR

Pseudomonas putida KT2440
2 LiuR

Pseudomonas syringae pv. tomato str. DC3000
3 LiuR

Pseudomonas fluorescens Pf-5
1 LiuR

Pseudomonas mendocina ymp
3 LiuR

Pseudomonas stutzeri A1501
1 LiuR

Azotobacter vinelandii AvOP
Branched-chain amino acid degradation
TF MerR
1 MerR

Pseudomonas stutzeri A1501
Mercury resistance
TF NmlR
1 NmlR

Azotobacter vinelandii AvOP
Carbonyl stress response
TF PhrR
2 PhrR

Pseudomonas aeruginosa PAO1
5 PhrR

Pseudomonas entomophila L48
5 PhrR

Pseudomonas putida KT2440
5 PhrR

Pseudomonas syringae pv. tomato str. DC3000
5 PhrR

Pseudomonas fluorescens Pf-5
5 PhrR

Pseudomonas mendocina ymp
3 PhrR

Pseudomonas stutzeri A1501
2 PhrR

Azotobacter vinelandii AvOP
Light-dependent DNA repair
TF SoxR
4 SoxR

Pseudomonas aeruginosa PAO1
3 SoxR

Pseudomonas entomophila L48
5 SoxR

Pseudomonas putida KT2440
2 SoxR

Pseudomonas fluorescens Pf-5
2 SoxR

Pseudomonas mendocina ymp
Superoxide stress response
ModE TF FdsR
2 FdsR

Pseudomonas mendocina ymp
Formate oxydation
TF ModE
1 ModE

Pseudomonas aeruginosa PAO1
1 ModE

Pseudomonas entomophila L48
1 ModE

Pseudomonas putida KT2440
1 ModE

Pseudomonas syringae pv. tomato str. DC3000
1 ModE

Pseudomonas fluorescens Pf-5
1 ModE

Pseudomonas mendocina ymp
1 ModE

Pseudomonas stutzeri A1501
1 ModE

Azotobacter vinelandii AvOP
Molybdenum homeostasis
NikR TF NikR
2 NikR

Pseudomonas putida KT2440
Nickel homeostasis
NrdR TF NrdR
4 NrdR

Pseudomonas aeruginosa PAO1
3 NrdR

Pseudomonas entomophila L48
3 NrdR

Pseudomonas putida KT2440
3 NrdR

Pseudomonas syringae pv. tomato str. DC3000
3 NrdR

Pseudomonas fluorescens Pf-5
2 NrdR

Pseudomonas mendocina ymp
3 NrdR

Pseudomonas stutzeri A1501
2 NrdR

Azotobacter vinelandii AvOP
Deoxyribonucleotide biosynthesis
NrtR TF NrtR
2 NrtR

Pseudomonas aeruginosa PAO1
2 NrtR

Pseudomonas entomophila L48
2 NrtR

Pseudomonas fluorescens Pf-5
2 NrtR

Pseudomonas mendocina ymp
NAD biosynthesis
RpiR TF EutR
1 EutR

Pseudomonas aeruginosa PAO1
1 EutR

Pseudomonas fluorescens Pf-5
Ethanolamine utilization
TF HexR
4 HexR

Pseudomonas aeruginosa PAO1
4 HexR

Pseudomonas entomophila L48
4 HexR

Pseudomonas putida KT2440
4 HexR

Pseudomonas syringae pv. tomato str. DC3000
4 HexR

Pseudomonas fluorescens Pf-5
5 HexR

Pseudomonas mendocina ymp
4 HexR

Pseudomonas stutzeri A1501
5 HexR

Azotobacter vinelandii AvOP
Central carbohydrate metabolism
TF HexR1
4 HexR1

Pseudomonas aeruginosa PAO1
3 HexR1

Pseudomonas entomophila L48
3 HexR1

Pseudomonas putida KT2440
2 HexR1

Pseudomonas syringae pv. tomato str. DC3000
2 HexR1

Pseudomonas fluorescens Pf-5
3 HexR1

Pseudomonas mendocina ymp
3 HexR1

Pseudomonas stutzeri A1501
3 HexR1

Azotobacter vinelandii AvOP
Central carbohydrate metabolism
Rrf2 TF IscR
2 IscR

Pseudomonas aeruginosa PAO1
2 IscR

Pseudomonas entomophila L48
2 IscR

Pseudomonas putida KT2440
2 IscR

Pseudomonas syringae pv. tomato str. DC3000
2 IscR

Pseudomonas fluorescens Pf-5
2 IscR

Pseudomonas mendocina ymp
2 IscR

Pseudomonas stutzeri A1501
1 IscR

Azotobacter vinelandii AvOP
Iron-sulfur cluster biogenesis
SdaR TF SdaR
1 SdaR

Pseudomonas aeruginosa PAO1
2 SdaR

Pseudomonas entomophila L48
2 SdaR

Pseudomonas putida KT2440
1 SdaR

Pseudomonas syringae pv. tomato str. DC3000
2 SdaR

Pseudomonas fluorescens Pf-5
1 SdaR

Pseudomonas mendocina ymp
2 SdaR

Azotobacter vinelandii AvOP
Glycerate utilization
TetR TF DesT
2 DesT

Pseudomonas aeruginosa PAO1
2 DesT

Pseudomonas entomophila L48
2 DesT

Pseudomonas putida KT2440
1 DesT

Pseudomonas syringae pv. tomato str. DC3000
2 DesT

Pseudomonas fluorescens Pf-5
3 DesT

Pseudomonas mendocina ymp
Fatty acid biosynthesis
TF FabR2
2 FabR2

Pseudomonas aeruginosa PAO1
2 FabR2

Pseudomonas mendocina ymp
Fatty acid biosynthesis
TF PsrA
8 PsrA

Pseudomonas aeruginosa PAO1
10 PsrA

Pseudomonas entomophila L48
10 PsrA

Pseudomonas putida KT2440
8 PsrA

Pseudomonas syringae pv. tomato str. DC3000
9 PsrA

Pseudomonas fluorescens Pf-5
8 PsrA

Pseudomonas mendocina ymp
7 PsrA

Pseudomonas stutzeri A1501
1 PsrA

Azotobacter vinelandii AvOP
Fatty acid degradation
TF RutR
4 RutR

Pseudomonas aeruginosa PAO1
3 RutR

Pseudomonas entomophila L48
2 RutR

Pseudomonas putida KT2440
4 RutR

Pseudomonas syringae pv. tomato str. DC3000
4 RutR

Pseudomonas fluorescens Pf-5
5 RutR

Pseudomonas mendocina ymp
3 RutR

Pseudomonas stutzeri A1501
Pyrimidine utilization
TyrR TF GcvR
1 GcvR

Pseudomonas aeruginosa PAO1
1 GcvR

Pseudomonas entomophila L48
1 GcvR

Pseudomonas putida KT2440
1 GcvR

Pseudomonas syringae pv. tomato str. DC3000
1 GcvR

Pseudomonas fluorescens Pf-5
1 GcvR

Pseudomonas mendocina ymp
1 GcvR

Azotobacter vinelandii AvOP
Glycine metabolism
TF PhhR
3 PhhR

Pseudomonas aeruginosa PAO1
2 PhhR

Pseudomonas entomophila L48
2 PhhR

Pseudomonas putida KT2440
2 PhhR

Pseudomonas syringae pv. tomato str. DC3000
2 PhhR

Pseudomonas fluorescens Pf-5
3 PhhR

Pseudomonas mendocina ymp
3 PhhR

Pseudomonas stutzeri A1501
Aromatic amino acid metabolism
RF00050 RNA FMN
1 FMN

Pseudomonas aeruginosa PAO1
1 FMN

Pseudomonas entomophila L48
1 FMN

Pseudomonas putida KT2440
1 FMN

Pseudomonas syringae pv. tomato str. DC3000
1 FMN

Pseudomonas fluorescens Pf-5
1 FMN

Pseudomonas mendocina ymp
1 FMN

Pseudomonas stutzeri A1501
1 FMN

Azotobacter vinelandii AvOP
Riboflavin biosynthesis
RF00059 RNA TPP
1 TPP

Pseudomonas aeruginosa PAO1
1 TPP

Pseudomonas entomophila L48
2 TPP

Pseudomonas putida KT2440
1 TPP

Pseudomonas syringae pv. tomato str. DC3000
1 TPP

Pseudomonas fluorescens Pf-5
1 TPP

Pseudomonas mendocina ymp
1 TPP

Pseudomonas stutzeri A1501
1 TPP

Azotobacter vinelandii AvOP
Thiamine biosynthesis
RF00080 RNA yybP-ykoY
2 yybP-ykoY

Pseudomonas aeruginosa PAO1
1 yybP-ykoY

Pseudomonas entomophila L48
1 yybP-ykoY

Pseudomonas putida KT2440
2 yybP-ykoY

Pseudomonas syringae pv. tomato str. DC3000
2 yybP-ykoY

Pseudomonas fluorescens Pf-5
1 yybP-ykoY

Pseudomonas mendocina ymp
1 yybP-ykoY

Pseudomonas stutzeri A1501
1 yybP-ykoY

Azotobacter vinelandii AvOP
RF00114 RNA S15
1 S15

Pseudomonas aeruginosa PAO1
1 S15

Pseudomonas entomophila L48
1 S15

Pseudomonas putida KT2440
1 S15

Pseudomonas syringae pv. tomato str. DC3000
1 S15

Pseudomonas fluorescens Pf-5
1 S15

Pseudomonas mendocina ymp
1 S15

Pseudomonas stutzeri A1501
1 S15

Azotobacter vinelandii AvOP
Ribosome biogenesis
RF00174 RNA Cobalamin
5 Cobalamin

Pseudomonas aeruginosa PAO1
6 Cobalamin

Pseudomonas entomophila L48
4 Cobalamin

Pseudomonas putida KT2440
4 Cobalamin

Pseudomonas syringae pv. tomato str. DC3000
5 Cobalamin

Pseudomonas fluorescens Pf-5
6 Cobalamin

Pseudomonas mendocina ymp
2 Cobalamin

Pseudomonas stutzeri A1501
1 Cobalamin

Azotobacter vinelandii AvOP
Cobalamin biosynthesis
RF00442 RNA ykkC-yxkD
1 ykkC-yxkD

Pseudomonas syringae pv. tomato str. DC3000
3 ykkC-yxkD

Pseudomonas mendocina ymp
2 ykkC-yxkD

Pseudomonas stutzeri A1501
Multidrug resistance
RF00504 RNA Glycine
1 Glycine

Pseudomonas stutzeri A1501
Glycine metabolism
RF01057 RNA SAH_riboswitch
1 SAH_riboswitch

Pseudomonas aeruginosa PAO1
1 SAH_riboswitch

Pseudomonas entomophila L48
1 SAH_riboswitch

Pseudomonas syringae pv. tomato str. DC3000
1 SAH_riboswitch

Pseudomonas fluorescens Pf-5
1 SAH_riboswitch

Pseudomonas mendocina ymp
1 SAH_riboswitch

Pseudomonas stutzeri A1501
1 SAH_riboswitch

Azotobacter vinelandii AvOP
Methionine metabolism
RF01068 RNA mini-ykkC
2 mini-ykkC

Pseudomonas aeruginosa PAO1
1 mini-ykkC

Pseudomonas entomophila L48
1 mini-ykkC

Pseudomonas putida KT2440
1 mini-ykkC

Pseudomonas syringae pv. tomato str. DC3000
1 mini-ykkC

Pseudomonas fluorescens Pf-5
1 mini-ykkC

Pseudomonas mendocina ymp
1 mini-ykkC

Pseudomonas stutzeri A1501
Multidrug resistance