Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Collection of regulogs in Vibrionales taxonomic group

General statistics
Genomes 10
TF regulogs 70
TF regulons 444
TF binding sites 3014
RNA regulogs 17
RNA regulons 140
RNA sites 202

This collection involves all regulons that were tentatively predicted by applying integrative comparative genomic approach to a single taxonomic group of closely-related genomes. To infer the regulons operated by transcription factors (TFs), we combined the identification of TF binding sites and cross-genome comparison of regulons with the analysis of the genomic and functional context of candidate target genes. To infer the regulons operated by regulatory RNAs such as riboswitches, we identified candidate RNA regulatory elements using HMM profiles and further analyzed their genomic and functional context.

Studied genomes and reconstructed regulon statistics
TF RNA Total
Genomes Regulons Sites Regulons Sites Regulons Sites
Photobacterium profundum SS9 50 310 14 22 64 332
Vibrio angustum S14 43 239 13 19 56 258
Vibrio cholerae O1 biovar eltor str. N16961 41 274 15 22 56 296
Vibrio fischeri ES114 37 277 13 19 50 296
Vibrio harveyi ATCC BAA-1116 46 324 14 19 60 343
Vibrio parahaemolyticus RIMD 2210633 51 370 15 21 66 391
Vibrio salmonicida LFI1238 36 235 13 19 49 254
Vibrio shilonii AK1 50 348 14 19 64 367
Vibrio splendidus LGP32 38 283 15 21 53 304
Vibrio vulnificus CMCP6 52 354 14 21 66 375
Genomic distribution of regulons
Family Type Regulator Function
ArgR TF ArgR
7 ArgR

Vibrio cholerae O1 biovar eltor str. N16961
9 ArgR

Vibrio vulnificus CMCP6
7 ArgR

Vibrio harveyi ATCC BAA-1116
8 ArgR

Vibrio parahaemolyticus RIMD 2210633
8 ArgR

Vibrio shilonii AK1
8 ArgR

Vibrio splendidus LGP32
5 ArgR

Vibrio fischeri ES114
6 ArgR

Vibrio salmonicida LFI1238
3 ArgR

Vibrio angustum S14
2 ArgR

Photobacterium profundum SS9
Arginine biosynthesis; Arginine degradation
BirA TF BirA
2 BirA

Vibrio cholerae O1 biovar eltor str. N16961
2 BirA

Vibrio vulnificus CMCP6
2 BirA

Vibrio harveyi ATCC BAA-1116
2 BirA

Vibrio parahaemolyticus RIMD 2210633
2 BirA

Vibrio shilonii AK1
2 BirA

Vibrio splendidus LGP32
2 BirA

Vibrio fischeri ES114
2 BirA

Vibrio salmonicida LFI1238
2 BirA

Vibrio angustum S14
2 BirA

Photobacterium profundum SS9
Biotin biosynthesis
DeoR TF AgaR
1 AgaR

Vibrio vulnificus CMCP6
2 AgaR

Vibrio fischeri ES114
1 AgaR

Vibrio angustum S14
3 AgaR

Photobacterium profundum SS9
N-acetylgalactosamine utilization
FUR TF Fur
32 Fur

Vibrio cholerae O1 biovar eltor str. N16961
37 Fur

Vibrio vulnificus CMCP6
45 Fur

Vibrio harveyi ATCC BAA-1116
40 Fur

Vibrio parahaemolyticus RIMD 2210633
37 Fur

Vibrio shilonii AK1
42 Fur

Vibrio splendidus LGP32
24 Fur

Vibrio fischeri ES114
21 Fur

Vibrio salmonicida LFI1238
28 Fur

Vibrio angustum S14
28 Fur

Photobacterium profundum SS9
Iron homeostasis
TF Zur
6 Zur

Vibrio cholerae O1 biovar eltor str. N16961
7 Zur

Vibrio vulnificus CMCP6
5 Zur

Vibrio harveyi ATCC BAA-1116
7 Zur

Vibrio parahaemolyticus RIMD 2210633
8 Zur

Vibrio shilonii AK1
6 Zur

Vibrio splendidus LGP32
6 Zur

Vibrio fischeri ES114
5 Zur

Vibrio salmonicida LFI1238
4 Zur

Vibrio angustum S14
4 Zur

Photobacterium profundum SS9
Zinc homeostasis
Fis TF NorR
3 NorR

Vibrio cholerae O1 biovar eltor str. N16961
2 NorR

Vibrio vulnificus CMCP6
4 NorR

Vibrio shilonii AK1
5 NorR

Vibrio splendidus LGP32
2 NorR

Vibrio fischeri ES114
2 NorR

Vibrio salmonicida LFI1238
Nitrosative stress response
TF NorR2
2 NorR2

Vibrio vulnificus CMCP6
2 NorR2

Vibrio harveyi ATCC BAA-1116
2 NorR2

Vibrio parahaemolyticus RIMD 2210633
2 NorR2

Vibrio fischeri ES114
2 NorR2

Vibrio angustum S14
2 NorR2

Photobacterium profundum SS9
Nitrosative stress response
TF NtrC
3 NtrC

Vibrio cholerae O1 biovar eltor str. N16961
3 NtrC

Vibrio vulnificus CMCP6
3 NtrC

Vibrio harveyi ATCC BAA-1116
4 NtrC

Vibrio parahaemolyticus RIMD 2210633
3 NtrC

Vibrio shilonii AK1
4 NtrC

Vibrio splendidus LGP32
3 NtrC

Vibrio fischeri ES114
3 NtrC

Vibrio angustum S14
3 NtrC

Photobacterium profundum SS9
Nitrogen assimilation
GntR/MocR TF PBPRB0322
2 PBPRB0322

Vibrio shilonii AK1
2 PBPRB0322

Photobacterium profundum SS9
Metabolite transport
TF PdxW
1 PdxW

Vibrio vulnificus CMCP6
1 PdxW

Vibrio harveyi ATCC BAA-1116
1 PdxW

Vibrio parahaemolyticus RIMD 2210633
1 PdxW

Vibrio shilonii AK1
1 PdxW

Vibrio splendidus LGP32
1 PdxW

Vibrio angustum S14
Pyridoxine/pyridoxal homeostasis
TF VEA_000881
1 VEA_000881

Vibrio vulnificus CMCP6
1 VEA_000881

Vibrio harveyi ATCC BAA-1116
1 VEA_000881

Vibrio parahaemolyticus RIMD 2210633
1 VEA_000881

Vibrio splendidus LGP32
1 VEA_000881

Vibrio salmonicida LFI1238
1 VEA_000881

Vibrio angustum S14
1 VEA_000881

Photobacterium profundum SS9
Metabolite transport
TF VSAK1_09283
2 VSAK1_09283

Vibrio shilonii AK1
2 VSAK1_09283

Vibrio angustum S14
2 VSAK1_09283

Photobacterium profundum SS9
Metabolite transport
TF VSAL_I1306
2 VSAL_I1306

Vibrio salmonicida LFI1238
2 VSAL_I1306

Vibrio angustum S14
TF VV21354
1 VV21354

Vibrio vulnificus CMCP6
1 VV21354

Vibrio splendidus LGP32
1 VV21354

Vibrio angustum S14
Metabolite transport
TF YdcR
1 YdcR

Vibrio cholerae O1 biovar eltor str. N16961
2 YdcR

Vibrio vulnificus CMCP6
2 YdcR

Vibrio harveyi ATCC BAA-1116
3 YdcR

Vibrio parahaemolyticus RIMD 2210633
3 YdcR

Vibrio splendidus LGP32
1 YdcR

Photobacterium profundum SS9
GntR/Others TF FadR
7 FadR

Vibrio cholerae O1 biovar eltor str. N16961
7 FadR

Vibrio vulnificus CMCP6
8 FadR

Vibrio harveyi ATCC BAA-1116
7 FadR

Vibrio parahaemolyticus RIMD 2210633
7 FadR

Vibrio shilonii AK1
7 FadR

Vibrio splendidus LGP32
7 FadR

Vibrio fischeri ES114
8 FadR

Vibrio salmonicida LFI1238
6 FadR

Vibrio angustum S14
6 FadR

Photobacterium profundum SS9
Fatty acid degradation
TF HutC
2 HutC

Vibrio cholerae O1 biovar eltor str. N16961
2 HutC

Vibrio vulnificus CMCP6
2 HutC

Vibrio harveyi ATCC BAA-1116
2 HutC

Vibrio parahaemolyticus RIMD 2210633
2 HutC

Vibrio shilonii AK1
2 HutC

Vibrio splendidus LGP32
2 HutC

Vibrio fischeri ES114
2 HutC

Vibrio salmonicida LFI1238
2 HutC

Vibrio angustum S14
2 HutC

Photobacterium profundum SS9
Histidine utilization
TF HypR
5 HypR

Vibrio parahaemolyticus RIMD 2210633
Proline and 4-hydrohyproline utilization
TF PdhR
1 PdhR

Vibrio cholerae O1 biovar eltor str. N16961
1 PdhR

Vibrio vulnificus CMCP6
1 PdhR

Vibrio harveyi ATCC BAA-1116
1 PdhR

Vibrio parahaemolyticus RIMD 2210633
1 PdhR

Vibrio shilonii AK1
1 PdhR

Vibrio splendidus LGP32
1 PdhR

Vibrio fischeri ES114
1 PdhR

Vibrio salmonicida LFI1238
1 PdhR

Vibrio angustum S14
1 PdhR

Photobacterium profundum SS9
Pyruvate metabolism
TF PhnR
3 PhnR

Vibrio cholerae O1 biovar eltor str. N16961
3 PhnR

Vibrio vulnificus CMCP6
3 PhnR

Vibrio harveyi ATCC BAA-1116
5 PhnR

Vibrio parahaemolyticus RIMD 2210633
5 PhnR

Vibrio shilonii AK1
3 PhnR

Vibrio splendidus LGP32
1 PhnR

Vibrio fischeri ES114
4 PhnR

Vibrio salmonicida LFI1238
4 PhnR

Vibrio angustum S14
Phosphonate utilization; 2-aminoethylphosphonate utilization
TF PrpR
1 PrpR

Vibrio cholerae O1 biovar eltor str. N16961
1 PrpR

Vibrio vulnificus CMCP6
1 PrpR

Vibrio harveyi ATCC BAA-1116
1 PrpR

Vibrio parahaemolyticus RIMD 2210633
1 PrpR

Vibrio shilonii AK1
1 PrpR

Vibrio splendidus LGP32
1 PrpR

Photobacterium profundum SS9
Methylcitrate utilization
TF UxuR
3 UxuR

Vibrio vulnificus CMCP6
4 UxuR

Vibrio parahaemolyticus RIMD 2210633
3 UxuR

Vibrio shilonii AK1
4 UxuR

Photobacterium profundum SS9
Glucuronate utilization
TF VIBHAR_07005
1 VIBHAR_07005

Vibrio harveyi ATCC BAA-1116
1 VIBHAR_07005

Vibrio parahaemolyticus RIMD 2210633
1 VIBHAR_07005

Vibrio shilonii AK1
1 VIBHAR_07005

Vibrio splendidus LGP32
1 VIBHAR_07005

Photobacterium profundum SS9
Multidrug resistance; Multidrug efflux
TF VSAK1_25095
6 VSAK1_25095

Vibrio shilonii AK1
7 VSAK1_25095

Photobacterium profundum SS9
Xanthine utilization; Allantoin utilization
IclR TF KdgR
7 KdgR

Vibrio vulnificus CMCP6
6 KdgR

Vibrio parahaemolyticus RIMD 2210633
4 KdgR

Vibrio shilonii AK1
6 KdgR

Photobacterium profundum SS9
Pectin and polygalacturonate utlization
LacI TF BglR
2 BglR

Vibrio vulnificus CMCP6
2 BglR

Vibrio harveyi ATCC BAA-1116
2 BglR

Vibrio splendidus LGP32
Beta-glucosides utilization
TF CelR
2 CelR

Vibrio cholerae O1 biovar eltor str. N16961
2 CelR

Vibrio vulnificus CMCP6
2 CelR

Vibrio harveyi ATCC BAA-1116
2 CelR

Vibrio parahaemolyticus RIMD 2210633
2 CelR

Photobacterium profundum SS9
Cellobiose utilization
TF CelR2
1 CelR2

Vibrio cholerae O1 biovar eltor str. N16961
1 CelR2

Vibrio fischeri ES114
1 CelR2

Vibrio salmonicida LFI1238
Cellobiose utilization
TF CelR3
2 CelR3

Vibrio shilonii AK1
1 CelR3

Photobacterium profundum SS9
Cellobiose utilization
TF EbgR
2 EbgR

Vibrio vulnificus CMCP6
1 EbgR

Vibrio harveyi ATCC BAA-1116
2 EbgR

Vibrio parahaemolyticus RIMD 2210633
2 EbgR

Vibrio shilonii AK1
4 EbgR

Vibrio fischeri ES114
2 EbgR

Vibrio angustum S14
2 EbgR

Photobacterium profundum SS9
Galactosides utilization
TF FruR
2 FruR

Vibrio cholerae O1 biovar eltor str. N16961
2 FruR

Vibrio vulnificus CMCP6
2 FruR

Vibrio harveyi ATCC BAA-1116
2 FruR

Vibrio parahaemolyticus RIMD 2210633
2 FruR

Vibrio shilonii AK1
2 FruR

Vibrio splendidus LGP32
2 FruR

Vibrio fischeri ES114
2 FruR

Vibrio salmonicida LFI1238
2 FruR

Vibrio angustum S14
2 FruR

Photobacterium profundum SS9
Fructose utilization
TF GalR
3 GalR

Vibrio cholerae O1 biovar eltor str. N16961
6 GalR

Vibrio vulnificus CMCP6
2 GalR

Vibrio harveyi ATCC BAA-1116
2 GalR

Vibrio parahaemolyticus RIMD 2210633
5 GalR

Vibrio shilonii AK1
2 GalR

Vibrio fischeri ES114
1 GalR

Vibrio angustum S14
3 GalR

Photobacterium profundum SS9
Galactose utilization
TF GntR
3 GntR

Vibrio cholerae O1 biovar eltor str. N16961
3 GntR

Vibrio vulnificus CMCP6
3 GntR

Vibrio harveyi ATCC BAA-1116
2 GntR

Vibrio parahaemolyticus RIMD 2210633
1 GntR

Vibrio shilonii AK1
2 GntR

Vibrio splendidus LGP32
3 GntR

Vibrio salmonicida LFI1238
2 GntR

Vibrio angustum S14
Gluconate utilization
TF MalI
2 MalI

Vibrio shilonii AK1
2 MalI

Vibrio fischeri ES114
1 MalI

Vibrio salmonicida LFI1238
2 MalI

Vibrio angustum S14
Maltose utilization
TF PurR
15 PurR

Vibrio cholerae O1 biovar eltor str. N16961
15 PurR

Vibrio vulnificus CMCP6
17 PurR

Vibrio harveyi ATCC BAA-1116
15 PurR

Vibrio parahaemolyticus RIMD 2210633
15 PurR

Vibrio shilonii AK1
16 PurR

Vibrio splendidus LGP32
15 PurR

Vibrio fischeri ES114
13 PurR

Vibrio salmonicida LFI1238
12 PurR

Vibrio angustum S14
15 PurR

Photobacterium profundum SS9
Purine metabolism
TF RbsR
1 RbsR

Vibrio cholerae O1 biovar eltor str. N16961
1 RbsR

Vibrio vulnificus CMCP6
1 RbsR

Vibrio harveyi ATCC BAA-1116
1 RbsR

Vibrio parahaemolyticus RIMD 2210633
1 RbsR

Vibrio shilonii AK1
1 RbsR

Vibrio splendidus LGP32
1 RbsR

Vibrio fischeri ES114
1 RbsR

Vibrio salmonicida LFI1238
1 RbsR

Vibrio angustum S14
1 RbsR

Photobacterium profundum SS9
Ribose utilization
TF ScrR
4 ScrR

Vibrio cholerae O1 biovar eltor str. N16961
Sucrose utilization
TF SgaR
2 SgaR

Vibrio vulnificus CMCP6
2 SgaR

Vibrio parahaemolyticus RIMD 2210633
Ascorbate utilization
TF TreR
1 TreR

Vibrio cholerae O1 biovar eltor str. N16961
1 TreR

Vibrio vulnificus CMCP6
1 TreR

Vibrio harveyi ATCC BAA-1116
1 TreR

Vibrio parahaemolyticus RIMD 2210633
1 TreR

Vibrio shilonii AK1
1 TreR

Vibrio splendidus LGP32
1 TreR

Vibrio salmonicida LFI1238
1 TreR

Photobacterium profundum SS9
Trehalose utilization
TF VCA0673
3 VCA0673

Vibrio cholerae O1 biovar eltor str. N16961
3 VCA0673

Vibrio harveyi ATCC BAA-1116
1 VCA0673

Vibrio shilonii AK1
1 VCA0673

Vibrio salmonicida LFI1238
TF VF_1255
1 VF_1255

Vibrio vulnificus CMCP6
1 VF_1255

Vibrio shilonii AK1
1 VF_1255

Vibrio fischeri ES114
1 VF_1255

Vibrio salmonicida LFI1238
1 VF_1255

Photobacterium profundum SS9
Sugar utilization
TF VP2396
2 VP2396

Vibrio parahaemolyticus RIMD 2210633
2 VP2396

Vibrio shilonii AK1
Galactosides utilization
TF VVA0138
4 VVA0138

Vibrio vulnificus CMCP6
Sugar utilization
LexA TF LexA
17 LexA

Vibrio cholerae O1 biovar eltor str. N16961
18 LexA

Vibrio vulnificus CMCP6
20 LexA

Vibrio harveyi ATCC BAA-1116
18 LexA

Vibrio parahaemolyticus RIMD 2210633
17 LexA

Vibrio shilonii AK1
16 LexA

Vibrio splendidus LGP32
14 LexA

Vibrio fischeri ES114
14 LexA

Vibrio salmonicida LFI1238
13 LexA

Vibrio angustum S14
12 LexA

Photobacterium profundum SS9
SOS response
LuxR TF NarP
8 NarP

Vibrio cholerae O1 biovar eltor str. N16961
11 NarP

Vibrio vulnificus CMCP6
11 NarP

Vibrio harveyi ATCC BAA-1116
13 NarP

Vibrio parahaemolyticus RIMD 2210633
16 NarP

Vibrio shilonii AK1
12 NarP

Vibrio splendidus LGP32
16 NarP

Vibrio fischeri ES114
11 NarP

Vibrio salmonicida LFI1238
3 NarP

Vibrio angustum S14
12 NarP

Photobacterium profundum SS9
Nitrate and nitrite respiration
TF PhsR
2 PhsR

Vibrio harveyi ATCC BAA-1116
2 PhsR

Vibrio parahaemolyticus RIMD 2210633
2 PhsR

Vibrio fischeri ES114
Thiosulfate reduction
TF TtrR
2 TtrR

Vibrio parahaemolyticus RIMD 2210633
2 TtrR

Vibrio shilonii AK1
2 TtrR

Photobacterium profundum SS9
Tetrathionate reduction
LysR TF MetR
4 MetR

Vibrio cholerae O1 biovar eltor str. N16961
5 MetR

Vibrio vulnificus CMCP6
6 MetR

Vibrio harveyi ATCC BAA-1116
5 MetR

Vibrio parahaemolyticus RIMD 2210633
4 MetR

Vibrio shilonii AK1
4 MetR

Vibrio splendidus LGP32
5 MetR

Vibrio fischeri ES114
3 MetR

Vibrio salmonicida LFI1238
3 MetR

Vibrio angustum S14
4 MetR

Photobacterium profundum SS9
Methionine biosynthesis
MerR TF CueR
2 CueR

Vibrio cholerae O1 biovar eltor str. N16961
3 CueR

Vibrio vulnificus CMCP6
3 CueR

Vibrio harveyi ATCC BAA-1116
3 CueR

Vibrio parahaemolyticus RIMD 2210633
2 CueR

Vibrio shilonii AK1
1 CueR

Vibrio splendidus LGP32
3 CueR

Vibrio fischeri ES114
3 CueR

Vibrio salmonicida LFI1238
2 CueR

Vibrio angustum S14
3 CueR

Photobacterium profundum SS9
Copper resistance
TF LiuR
4 LiuR

Vibrio vulnificus CMCP6
4 LiuR

Vibrio harveyi ATCC BAA-1116
8 LiuR

Vibrio parahaemolyticus RIMD 2210633
4 LiuR

Vibrio shilonii AK1
4 LiuR

Vibrio angustum S14
4 LiuR

Photobacterium profundum SS9
Branched-chain amino acid degradation
TF NmlR
1 NmlR

Vibrio parahaemolyticus RIMD 2210633
1 NmlR

Vibrio angustum S14
Carbonyl stress response
TF PhrR
2 PhrR

Vibrio cholerae O1 biovar eltor str. N16961
2 PhrR

Vibrio vulnificus CMCP6
2 PhrR

Vibrio harveyi ATCC BAA-1116
2 PhrR

Vibrio parahaemolyticus RIMD 2210633
2 PhrR

Vibrio shilonii AK1
1 PhrR

Vibrio angustum S14
Light-dependent DNA repair
TF SoxR
2 SoxR

Vibrio cholerae O1 biovar eltor str. N16961
4 SoxR

Vibrio vulnificus CMCP6
4 SoxR

Vibrio harveyi ATCC BAA-1116
5 SoxR

Vibrio parahaemolyticus RIMD 2210633
3 SoxR

Vibrio shilonii AK1
1 SoxR

Vibrio splendidus LGP32
3 SoxR

Vibrio angustum S14
2 SoxR

Photobacterium profundum SS9
Superoxide stress response
TF ZntR
1 ZntR

Vibrio cholerae O1 biovar eltor str. N16961
1 ZntR

Vibrio vulnificus CMCP6
1 ZntR

Vibrio harveyi ATCC BAA-1116
1 ZntR

Vibrio parahaemolyticus RIMD 2210633
1 ZntR

Vibrio shilonii AK1
1 ZntR

Vibrio splendidus LGP32
1 ZntR

Vibrio fischeri ES114
1 ZntR

Vibrio salmonicida LFI1238
1 ZntR

Vibrio angustum S14
1 ZntR

Photobacterium profundum SS9
Zinc resistance
MetJ TF MetJ
11 MetJ

Vibrio cholerae O1 biovar eltor str. N16961
12 MetJ

Vibrio vulnificus CMCP6
13 MetJ

Vibrio harveyi ATCC BAA-1116
13 MetJ

Vibrio parahaemolyticus RIMD 2210633
12 MetJ

Vibrio shilonii AK1
11 MetJ

Vibrio splendidus LGP32
11 MetJ

Vibrio fischeri ES114
10 MetJ

Vibrio salmonicida LFI1238
12 MetJ

Vibrio angustum S14
11 MetJ

Photobacterium profundum SS9
Methionine metabolism; Methionine biosynthesis
ModE TF ModE
1 ModE

Vibrio angustum S14
1 ModE

Photobacterium profundum SS9
Molybdenum homeostasis
NrdR TF NrdR
2 NrdR

Vibrio cholerae O1 biovar eltor str. N16961
2 NrdR

Vibrio vulnificus CMCP6
2 NrdR

Vibrio harveyi ATCC BAA-1116
2 NrdR

Vibrio parahaemolyticus RIMD 2210633
2 NrdR

Vibrio shilonii AK1
2 NrdR

Vibrio splendidus LGP32
2 NrdR

Vibrio fischeri ES114
2 NrdR

Vibrio salmonicida LFI1238
2 NrdR

Vibrio angustum S14
2 NrdR

Photobacterium profundum SS9
Deoxyribonucleotide biosynthesis
NrtR TF NrtR
2 NrtR

Vibrio cholerae O1 biovar eltor str. N16961
2 NrtR

Vibrio vulnificus CMCP6
2 NrtR

Vibrio harveyi ATCC BAA-1116
2 NrtR

Vibrio parahaemolyticus RIMD 2210633
NAD biosynthesis
ROK TF NagC
20 NagC

Vibrio cholerae O1 biovar eltor str. N16961
21 NagC

Vibrio vulnificus CMCP6
17 NagC

Vibrio harveyi ATCC BAA-1116
19 NagC

Vibrio parahaemolyticus RIMD 2210633
14 NagC

Vibrio shilonii AK1
18 NagC

Vibrio splendidus LGP32
20 NagC

Vibrio fischeri ES114
14 NagC

Vibrio salmonicida LFI1238
11 NagC

Vibrio angustum S14
17 NagC

Photobacterium profundum SS9
N-acetylglucosamine utilization
RpiR TF HexR
15 HexR

Vibrio cholerae O1 biovar eltor str. N16961
16 HexR

Vibrio vulnificus CMCP6
16 HexR

Vibrio harveyi ATCC BAA-1116
16 HexR

Vibrio parahaemolyticus RIMD 2210633
12 HexR

Vibrio shilonii AK1
12 HexR

Vibrio splendidus LGP32
14 HexR

Vibrio fischeri ES114
15 HexR

Vibrio salmonicida LFI1238
13 HexR

Vibrio angustum S14
20 HexR

Photobacterium profundum SS9
Central carbohydrate metabolism
TF NanR (SiaQ)
3 NanR (SiaQ)

Vibrio cholerae O1 biovar eltor str. N16961
2 NanR (SiaQ)

Vibrio vulnificus CMCP6
1 NanR (SiaQ)

Vibrio shilonii AK1
Sialic acid utilization
TF SiaR
5 SiaR

Vibrio fischeri ES114
2 SiaR

Vibrio salmonicida LFI1238
4 SiaR

Photobacterium profundum SS9
Sialic acid utilization
Rrf2 TF IscR
3 IscR

Vibrio cholerae O1 biovar eltor str. N16961
3 IscR

Vibrio vulnificus CMCP6
3 IscR

Vibrio harveyi ATCC BAA-1116
3 IscR

Vibrio parahaemolyticus RIMD 2210633
3 IscR

Vibrio shilonii AK1
2 IscR

Vibrio splendidus LGP32
3 IscR

Vibrio fischeri ES114
3 IscR

Vibrio salmonicida LFI1238
3 IscR

Vibrio angustum S14
3 IscR

Photobacterium profundum SS9
Iron-sulfur cluster biogenesis
TF NsrR
3 NsrR

Vibrio vulnificus CMCP6
4 NsrR

Vibrio harveyi ATCC BAA-1116
3 NsrR

Vibrio parahaemolyticus RIMD 2210633
1 NsrR

Vibrio splendidus LGP32
4 NsrR

Vibrio fischeri ES114
4 NsrR

Vibrio salmonicida LFI1238
5 NsrR

Vibrio angustum S14
5 NsrR

Photobacterium profundum SS9
Nitrosative stress response
SdaR TF SdaR
1 SdaR

Vibrio cholerae O1 biovar eltor str. N16961
1 SdaR

Vibrio vulnificus CMCP6
1 SdaR

Vibrio harveyi ATCC BAA-1116
1 SdaR

Vibrio parahaemolyticus RIMD 2210633
1 SdaR

Vibrio fischeri ES114
1 SdaR

Vibrio salmonicida LFI1238
1 SdaR

Photobacterium profundum SS9
Glycerate utilization
TetR TF FabR
4 FabR

Vibrio cholerae O1 biovar eltor str. N16961
5 FabR

Vibrio vulnificus CMCP6
6 FabR

Vibrio harveyi ATCC BAA-1116
6 FabR

Vibrio parahaemolyticus RIMD 2210633
4 FabR

Vibrio shilonii AK1
6 FabR

Vibrio splendidus LGP32
6 FabR

Vibrio fischeri ES114
6 FabR

Vibrio salmonicida LFI1238
5 FabR

Vibrio angustum S14
6 FabR

Photobacterium profundum SS9
Fatty acid biosynthesis
TF PsrA
6 PsrA

Vibrio cholerae O1 biovar eltor str. N16961
6 PsrA

Vibrio vulnificus CMCP6
6 PsrA

Vibrio harveyi ATCC BAA-1116
6 PsrA

Vibrio parahaemolyticus RIMD 2210633
5 PsrA

Vibrio shilonii AK1
5 PsrA

Vibrio splendidus LGP32
6 PsrA

Vibrio angustum S14
6 PsrA

Photobacterium profundum SS9
Fatty acid degradation
TF RutR
1 RutR

Vibrio shilonii AK1
1 RutR

Photobacterium profundum SS9
Pyrimidine utilization
TrpR TF TrpR
2 TrpR

Vibrio cholerae O1 biovar eltor str. N16961
3 TrpR

Vibrio vulnificus CMCP6
2 TrpR

Vibrio harveyi ATCC BAA-1116
3 TrpR

Vibrio parahaemolyticus RIMD 2210633
3 TrpR

Vibrio shilonii AK1
2 TrpR

Vibrio splendidus LGP32
2 TrpR

Vibrio fischeri ES114
2 TrpR

Vibrio salmonicida LFI1238
3 TrpR

Vibrio angustum S14
2 TrpR

Photobacterium profundum SS9
Tryptophan biosynthesis
TyrR TF TyrR
6 TyrR

Vibrio cholerae O1 biovar eltor str. N16961
8 TyrR

Vibrio vulnificus CMCP6
6 TyrR

Vibrio harveyi ATCC BAA-1116
7 TyrR

Vibrio parahaemolyticus RIMD 2210633
8 TyrR

Vibrio shilonii AK1
8 TyrR

Vibrio splendidus LGP32
4 TyrR

Vibrio fischeri ES114
4 TyrR

Vibrio salmonicida LFI1238
7 TyrR

Vibrio angustum S14
6 TyrR

Photobacterium profundum SS9
Aromatic amino acid metabolism
RF00050 RNA FMN
1 FMN

Vibrio cholerae O1 biovar eltor str. N16961
1 FMN

Vibrio vulnificus CMCP6
1 FMN

Vibrio harveyi ATCC BAA-1116
1 FMN

Vibrio parahaemolyticus RIMD 2210633
1 FMN

Vibrio shilonii AK1
1 FMN

Vibrio splendidus LGP32
1 FMN

Vibrio angustum S14
1 FMN

Photobacterium profundum SS9
Riboflavin biosynthesis
RF00059 RNA TPP
3 TPP

Vibrio cholerae O1 biovar eltor str. N16961
3 TPP

Vibrio vulnificus CMCP6
3 TPP

Vibrio harveyi ATCC BAA-1116
3 TPP

Vibrio parahaemolyticus RIMD 2210633
3 TPP

Vibrio shilonii AK1
3 TPP

Vibrio splendidus LGP32
3 TPP

Vibrio fischeri ES114
3 TPP

Vibrio salmonicida LFI1238
3 TPP

Vibrio angustum S14
3 TPP

Photobacterium profundum SS9
Thiamine biosynthesis
RF00080 RNA yybP-ykoY
2 yybP-ykoY

Vibrio cholerae O1 biovar eltor str. N16961
3 yybP-ykoY

Vibrio vulnificus CMCP6
2 yybP-ykoY

Vibrio harveyi ATCC BAA-1116
2 yybP-ykoY

Vibrio parahaemolyticus RIMD 2210633
2 yybP-ykoY

Vibrio shilonii AK1
2 yybP-ykoY

Vibrio splendidus LGP32
2 yybP-ykoY

Vibrio fischeri ES114
3 yybP-ykoY

Vibrio salmonicida LFI1238
2 yybP-ykoY

Vibrio angustum S14
2 yybP-ykoY

Photobacterium profundum SS9
RF00114 RNA S15
1 S15

Vibrio cholerae O1 biovar eltor str. N16961
1 S15

Vibrio vulnificus CMCP6
1 S15

Vibrio parahaemolyticus RIMD 2210633
1 S15

Vibrio shilonii AK1
1 S15

Vibrio splendidus LGP32
1 S15

Vibrio fischeri ES114
1 S15

Vibrio salmonicida LFI1238
1 S15

Vibrio angustum S14
1 S15

Photobacterium profundum SS9
Ribosome biogenesis
RF00167 RNA Purine
1 Purine

Vibrio vulnificus CMCP6
1 Purine

Vibrio harveyi ATCC BAA-1116
1 Purine

Vibrio parahaemolyticus RIMD 2210633
1 Purine

Vibrio shilonii AK1
1 Purine

Vibrio splendidus LGP32
1 Purine

Photobacterium profundum SS9
Purine metabolism
RF00168 RNA Lysine
3 Lysine

Vibrio cholerae O1 biovar eltor str. N16961
2 Lysine

Vibrio vulnificus CMCP6
2 Lysine

Vibrio harveyi ATCC BAA-1116
2 Lysine

Vibrio parahaemolyticus RIMD 2210633
2 Lysine

Vibrio shilonii AK1
2 Lysine

Vibrio splendidus LGP32
2 Lysine

Vibrio fischeri ES114
1 Lysine

Vibrio salmonicida LFI1238
3 Lysine

Vibrio angustum S14
3 Lysine

Photobacterium profundum SS9
Lysine biosynthesis
RF00174 RNA Cobalamin
1 Cobalamin

Vibrio cholerae O1 biovar eltor str. N16961
1 Cobalamin

Vibrio vulnificus CMCP6
1 Cobalamin

Vibrio harveyi ATCC BAA-1116
1 Cobalamin

Vibrio parahaemolyticus RIMD 2210633
1 Cobalamin

Vibrio shilonii AK1
2 Cobalamin

Vibrio splendidus LGP32
2 Cobalamin

Vibrio fischeri ES114
2 Cobalamin

Vibrio salmonicida LFI1238
1 Cobalamin

Vibrio angustum S14
1 Cobalamin

Photobacterium profundum SS9
Cobalamin biosynthesis
RF00380 RNA ykoK
1 ykoK

Vibrio cholerae O1 biovar eltor str. N16961
Magnesium homeostasis
RF00504 RNA Glycine
1 Glycine

Vibrio cholerae O1 biovar eltor str. N16961
1 Glycine

Vibrio vulnificus CMCP6
1 Glycine

Vibrio harveyi ATCC BAA-1116
1 Glycine

Vibrio parahaemolyticus RIMD 2210633
1 Glycine

Vibrio shilonii AK1
1 Glycine

Vibrio splendidus LGP32
1 Glycine

Vibrio fischeri ES114
1 Glycine

Vibrio salmonicida LFI1238
1 Glycine

Vibrio angustum S14
1 Glycine

Photobacterium profundum SS9
Glycine metabolism
RF00506 RNA Thr_leader
1 Thr_leader

Vibrio cholerae O1 biovar eltor str. N16961
1 Thr_leader

Vibrio vulnificus CMCP6
1 Thr_leader

Vibrio harveyi ATCC BAA-1116
1 Thr_leader

Vibrio parahaemolyticus RIMD 2210633
1 Thr_leader

Vibrio shilonii AK1
1 Thr_leader

Vibrio splendidus LGP32
1 Thr_leader

Vibrio fischeri ES114
1 Thr_leader

Vibrio salmonicida LFI1238
1 Thr_leader

Vibrio angustum S14
1 Thr_leader

Photobacterium profundum SS9
Threonine biosynthesis
RF00512 RNA Leu_leader
1 Leu_leader

Vibrio cholerae O1 biovar eltor str. N16961
1 Leu_leader

Vibrio vulnificus CMCP6
1 Leu_leader

Vibrio harveyi ATCC BAA-1116
1 Leu_leader

Vibrio parahaemolyticus RIMD 2210633
1 Leu_leader

Vibrio shilonii AK1
1 Leu_leader

Vibrio splendidus LGP32
1 Leu_leader

Vibrio fischeri ES114
1 Leu_leader

Vibrio salmonicida LFI1238
1 Leu_leader

Vibrio angustum S14
1 Leu_leader

Photobacterium profundum SS9
Branched-chain amino acid biosynthesis
RF00513 RNA Trp_leader
1 Trp_leader

Vibrio cholerae O1 biovar eltor str. N16961
1 Trp_leader

Vibrio vulnificus CMCP6
1 Trp_leader

Vibrio harveyi ATCC BAA-1116
1 Trp_leader

Vibrio parahaemolyticus RIMD 2210633
1 Trp_leader

Vibrio shilonii AK1
1 Trp_leader

Vibrio splendidus LGP32
1 Trp_leader

Vibrio fischeri ES114
1 Trp_leader

Vibrio salmonicida LFI1238
1 Trp_leader

Vibrio angustum S14
1 Trp_leader

Photobacterium profundum SS9
Tryptophan biosynthesis
RF00514 RNA His_leader
1 His_leader

Vibrio cholerae O1 biovar eltor str. N16961
1 His_leader

Vibrio vulnificus CMCP6
1 His_leader

Vibrio harveyi ATCC BAA-1116
1 His_leader

Vibrio parahaemolyticus RIMD 2210633
1 His_leader

Vibrio shilonii AK1
1 His_leader

Vibrio splendidus LGP32
1 His_leader

Vibrio fischeri ES114
1 His_leader

Vibrio salmonicida LFI1238
1 His_leader

Vibrio angustum S14
1 His_leader

Photobacterium profundum SS9
Histidine biosynthesis
RF00557 RNA L10_leader
1 L10_leader

Vibrio splendidus LGP32
1 L10_leader

Vibrio fischeri ES114
1 L10_leader

Vibrio salmonicida LFI1238
Ribosome biogenesis
RF01051 RNA GEMM_RNA_motif
2 GEMM_RNA_motif

Vibrio cholerae O1 biovar eltor str. N16961
2 GEMM_RNA_motif

Vibrio vulnificus CMCP6
1 GEMM_RNA_motif

Vibrio harveyi ATCC BAA-1116
2 GEMM_RNA_motif

Vibrio parahaemolyticus RIMD 2210633
1 GEMM_RNA_motif

Vibrio shilonii AK1
1 GEMM_RNA_motif

Vibrio splendidus LGP32
1 GEMM_RNA_motif

Vibrio fischeri ES114
1 GEMM_RNA_motif

Vibrio salmonicida LFI1238
1 GEMM_RNA_motif

Vibrio angustum S14
3 GEMM_RNA_motif

Photobacterium profundum SS9
Second messenger response
RF01055 RNA MOCO_RNA_motif
1 MOCO_RNA_motif

Vibrio cholerae O1 biovar eltor str. N16961
1 MOCO_RNA_motif

Vibrio vulnificus CMCP6
1 MOCO_RNA_motif

Vibrio harveyi ATCC BAA-1116
1 MOCO_RNA_motif

Vibrio parahaemolyticus RIMD 2210633
1 MOCO_RNA_motif

Vibrio shilonii AK1
1 MOCO_RNA_motif

Vibrio splendidus LGP32
1 MOCO_RNA_motif

Vibrio fischeri ES114
1 MOCO_RNA_motif

Vibrio salmonicida LFI1238
1 MOCO_RNA_motif

Vibrio angustum S14
1 MOCO_RNA_motif

Photobacterium profundum SS9
Molybdopterin biosynthesis; Molybdenum homeostasis
RF01068 RNA mini-ykkC
1 mini-ykkC

Vibrio cholerae O1 biovar eltor str. N16961
1 mini-ykkC

Vibrio harveyi ATCC BAA-1116
1 mini-ykkC

Vibrio parahaemolyticus RIMD 2210633
Multidrug resistance