Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Collection of regulogs for T-box (RF00230) RNA regulatory element

The T-box leader is a highly conserved RNA regulatory element that is involved in regulation of various genes involved in amino acid metabolism in Gram-positive bacteria, mostly in the Firmicutes phylum [19932103]. T-box elements initially identified in the regulatory leader regions of aminoacyl-tRNA synthetase genes and some amino acid biosynthetic genes in Bacillus subtilis and related bacteria control gene expression via a unique transcription antitermination mechanism [8045882, 8289305]. T-box serves as a riboswitch that binds directly to a specific uncharged tRNA and thus measures the amino acid availability in the cell. more

Phylum Regulog RNA regulons (studied genomes) RNA sites
Actinobacteria T-box(Ile) - Corynebacteriaceae 8 (8) 8
Actinobacteria T-box(Ile) - Mycobacteriaceae 7 (9) 7
Chloroflexi T-box(Gly) - Chloroflexia 5 (5) 5
Chloroflexi T-box(Ile) - Chloroflexia 5 (5) 5
Chloroflexi T-box(Phe) - Chloroflexia 2 (5) 2
Chloroflexi T-box(Pro) - Chloroflexia 1 (5) 1
Chloroflexi T-box(Ser) - Chloroflexia 2 (5) 2
Chloroflexi T-box(Thr) - Chloroflexia 4 (5) 4
Chloroflexi T-box(Trp) - Chloroflexia 5 (5) 5
Chloroflexi T-box(Val) - Chloroflexia 1 (5) 1
Deinococcus-Thermus T-box(Gly) - Deinococcus-Thermus 3 (5) 3
Deinococcus-Thermus T-box(Ile) - Deinococcus-Thermus 5 (5) 5
Deinococcus-Thermus T-box(Val) - Deinococcus-Thermus 2 (5) 2
Firmicutes T-box(Ala) - Bacillales 10 (11) 10
Firmicutes T-box(Ala) - Clostridiaceae 15 (20) 20
Firmicutes T-box(Ala) - Lactobacillaceae 15 (15) 15
Firmicutes T-box(Ala) - Staphylococcaceae 7 (7) 7
Firmicutes T-box(Ala) - Streptococcaceae 15 (15) 15
Firmicutes T-box(Arg) - Bacillales 2 (11) 2
Firmicutes T-box(Arg) - Clostridiaceae 11 (20) 21
Firmicutes T-box(Arg) - Lactobacillaceae 13 (15) 14
Firmicutes T-box(Asn) - Bacillales 7 (11) 8
Firmicutes T-box(Asn) - Clostridiaceae 17 (20) 24
Firmicutes T-box(Asn) - Lactobacillaceae 9 (15) 13
Firmicutes T-box(Asn) - Staphylococcaceae 7 (7) 7
Firmicutes T-box(Asn) - Streptococcaceae 3 (15) 3
Firmicutes T-box(Asp) - Bacillales 4 (11) 5
Firmicutes T-box(Asp) - Clostridiaceae 4 (20) 4
Firmicutes T-box(Asp) - Lactobacillaceae 14 (15) 16
Firmicutes T-box(Asp) - Streptococcaceae 2 (15) 2
Firmicutes T-box(Cys) - Bacillales 11 (11) 11
Firmicutes T-box(Cys) - Clostridiaceae 13 (20) 21
Firmicutes T-box(Cys) - Lactobacillaceae 1 (15) 1
Firmicutes T-box(Cys) - Staphylococcaceae 7 (7) 7
Firmicutes T-box(Gly) - Bacillales 9 (11) 9
Firmicutes T-box(Gly) - Clostridiaceae 10 (20) 10
Firmicutes T-box(Gly) - Lactobacillaceae 15 (15) 15
Firmicutes T-box(Gly) - Staphylococcaceae 7 (7) 7
Firmicutes T-box(Gly) - Streptococcaceae 15 (15) 15
Firmicutes T-box(His) - Clostridiaceae 3 (20) 3
Firmicutes T-box(His) - Lactobacillaceae 4 (15) 4
Firmicutes T-box(His) - Streptococcaceae 6 (15) 7
Firmicutes T-box(Ile) - Bacillales 11 (11) 16
Firmicutes T-box(Ile) - Clostridiaceae 19 (20) 29
Firmicutes T-box(Ile) - Lactobacillaceae 15 (15) 28
Firmicutes T-box(Ile) - Staphylococcaceae 7 (7) 7
Firmicutes T-box(Ile) - Streptococcaceae 15 (15) 15
Firmicutes T-box(Leu) - Bacillales 11 (11) 29
Firmicutes T-box(Leu) - Clostridiaceae 20 (20) 30
Firmicutes T-box(Leu) - Lactobacillaceae 15 (15) 16
Firmicutes T-box(Leu) - Staphylococcaceae 7 (7) 7
Firmicutes T-box(Lys) - Bacillales 6 (11) 7
Firmicutes T-box(Lys) - Clostridiaceae 1 (20) 1
Firmicutes T-box(Lys) - Lactobacillaceae 1 (15) 1
Firmicutes T-box(Met) - Bacillales 5 (11) 6
Firmicutes T-box(Met) - Clostridiaceae 16 (20) 19
Firmicutes T-box(Met) - Lactobacillaceae 15 (15) 54
Firmicutes T-box(Met) - Staphylococcaceae 7 (7) 9
Firmicutes T-box(Met) - Streptococcaceae 2 (15) 2
Firmicutes T-box(Phe) - Bacillales 11 (11) 11
Firmicutes T-box(Phe) - Clostridiaceae 20 (20) 22
Firmicutes T-box(Phe) - Lactobacillaceae 15 (15) 15
Firmicutes T-box(Phe) - Staphylococcaceae 7 (7) 8
Firmicutes T-box(Phe) - Streptococcaceae 15 (15) 15
Firmicutes T-box(Pro) - Bacillales 11 (11) 21
Firmicutes T-box(Pro) - Clostridiaceae 16 (20) 16
Firmicutes T-box(Pro) - Lactobacillaceae 3 (15) 3
Firmicutes T-box(Ser) - Bacillales 11 (11) 13
Firmicutes T-box(Ser) - Clostridiaceae 13 (20) 16
Firmicutes T-box(Ser) - Lactobacillaceae 14 (15) 15
Firmicutes T-box(Ser) - Staphylococcaceae 7 (7) 7
Firmicutes T-box(Ser) - Streptococcaceae 15 (15) 15
Firmicutes T-box(Thr) - Bacillales 11 (11) 20
Firmicutes T-box(Thr) - Clostridiaceae 18 (20) 22
Firmicutes T-box(Thr) - Lactobacillaceae 15 (15) 16
Firmicutes T-box(Thr) - Staphylococcaceae 7 (7) 9
Firmicutes T-box(Thr) - Streptococcaceae 15 (15) 15
Firmicutes T-box(Trp) - Bacillales 11 (11) 17
Firmicutes T-box(Trp) - Clostridiaceae 20 (20) 41
Firmicutes T-box(Trp) - Lactobacillaceae 10 (15) 15
Firmicutes T-box(Trp) - Staphylococcaceae 6 (7) 10
Firmicutes T-box(Trp) - Streptococcaceae 14 (15) 24
Firmicutes T-box(Tyr) - Bacillales 11 (11) 19
Firmicutes T-box(Tyr) - Clostridiaceae 13 (20) 16
Firmicutes T-box(Tyr) - Lactobacillaceae 15 (15) 29
Firmicutes T-box(Tyr) - Staphylococcaceae 7 (7) 8
Firmicutes T-box(Val) - Bacillales 10 (11) 10
Firmicutes T-box(Val) - Clostridiaceae 17 (20) 22
Firmicutes T-box(Val) - Lactobacillaceae 15 (15) 21
Firmicutes T-box(Val) - Staphylococcaceae 6 (7) 6
Firmicutes T-box(Val) - Streptococcaceae 15 (15) 15