Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Collection of regulogs for yybP-ykoY (RF00080) RNA regulatory element

The yybP-ykoY RNA motif was originally discovered in a large-scale genomic screen for conserved riboswitch-like motifs in intergenic regions of various microbial species [15096624]. Representatives of this family were found upstream of related families of protein genes in many bacteria, including the yybP and ykoY genes in Bacillus subtilis. The specific functions of these proteins are unknown, but this structured RNA element may be involved in their genetic regulation as a riboswitch. An ortholog of ykoY in Escherichia coli, the ygjT gene, is also preceded by similar RNA motif and was known to be induced by extreme alkaline conditions [2108134]. more

Phylum Regulog RNA regulons (studied genomes) RNA sites
Actinobacteria yybP-ykoY - Corynebacteriaceae 8 (8) 10
Actinobacteria yybP-ykoY - Mycobacteriaceae 7 (9) 13
Chloroflexi yybP-ykoY - Chloroflexia 4 (5) 5
Cyanobacteria yybP-ykoY - Cyanobacteria 3 (14) 4
Deinococcus-Thermus yybP-ykoY - Deinococcus-Thermus 3 (5) 5
Firmicutes yybP-ykoY - Bacillales 10 (11) 16
Firmicutes yybP-ykoY - Clostridiaceae 16 (20) 35
Firmicutes yybP-ykoY - Lactobacillaceae 11 (15) 13
Firmicutes yybP-ykoY - Staphylococcaceae 7 (7) 7
Firmicutes yybP-ykoY - Streptococcaceae 15 (15) 15
Proteobacteria yybP-ykoY - Burkholderia 8 (8) 12
Proteobacteria yybP-ykoY - Caulobacterales 4 (4) 4
Proteobacteria yybP-ykoY - Enterobacteriales 12 (12) 21
Proteobacteria yybP-ykoY - Pseudomonadaceae 8 (8) 11
Proteobacteria yybP-ykoY - Ralstonia 6 (6) 8
Proteobacteria yybP-ykoY - Rhizobiales 3 (15) 3
Proteobacteria yybP-ykoY - Rhodobacterales 1 (15) 1
Proteobacteria yybP-ykoY - Shewanellaceae 16 (16) 19
Proteobacteria yybP-ykoY - Vibrionales 10 (10) 22
Proteobacteria/delta yybP-ykoY - Desulfovibrionales 6 (10) 7
Thermotogae yybP-ykoY - Thermotogales 1 (11) 1