Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Collection of regulogs for mini-ykkC (RF01068) RNA regulatory element

The mini-ykkC RNA motif is a putative regulatory element found upstream of the ykkC genes and that is highly conserved in various species of Proteobacteria [17621584]. This motif was named mini-ykkC because it appears to be a cis-regulator of a set of genes similar to that controlled by the ykkC (RF00442) motif. The mini-ykkC RNA motif is a small RNA element that consists of two conserved stem-loops, and which is structurally distinct from the ykkC RNA. Natural ligands of both ykkC and mini-ykkC cis-regulatory RNA motifs are unknown.

Phylum Regulog RNA regulons (studied genomes) RNA sites
Cyanobacteria mini-ykkC - Cyanobacteria 1 (14) 1
Proteobacteria mini-ykkC - Burkholderia 8 (8) 9
Proteobacteria mini-ykkC - Caulobacterales 4 (4) 4
Proteobacteria mini-ykkC - Enterobacteriales 10 (12) 10
Proteobacteria mini-ykkC - Pseudomonadaceae 7 (8) 8
Proteobacteria mini-ykkC - Ralstonia 2 (6) 2
Proteobacteria mini-ykkC - Rhizobiales 9 (15) 12
Proteobacteria mini-ykkC - Rhodobacterales 9 (15) 10
Proteobacteria mini-ykkC - Shewanellaceae 7 (16) 7
Proteobacteria mini-ykkC - Vibrionales 3 (10) 3
Proteobacteria/delta mini-ykkC - Desulfovibrionales 1 (10) 1