Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Browse by regulogs

[browse by genomes]

Type Regulog Function Effector Family Genomes Sites
TF MprA - Enterobacteriales Multidrug resistance 2,4-Dinitrophenol, Carbonyl cyanide m-chlorophenylhydrazone MarR 12 25
TF IlvY - Enterobacteriales Branched-chain amino acid biosynthesis 2-Acetolactate LysR 12 46
TF IlvY - Shewanellaceae Branched-chain amino acid biosynthesis 2-Acetolactate, Acetohydroxybutyrate LysR 16 64
TF PhnR - Enterobacteriales 2-aminoethylphosphonate utilization, Phosphonate utilization 2-aminoethylphosphonate GntR/Others 12 6
TF PhnR1 - Enterobacteriales 2-aminoethylphosphonate utilization 2-aminoethylphosphonate GntR/Others 12 2
TF PhnR1 - Psychromonadaceae/Aeromonadales 2-aminoethylphosphonate utilization 2-aminoethylphosphonate GntR/Others 6 8
TF PhnR2 - Burkholderia 2-aminoethylphosphonate utilization 2-aminoethylphosphonate GntR/Others 8 10
TF PhnR2 - Comamonadaceae 2-aminoethylphosphonate utilization, Phosphonate utilization, Phosphonoacetate utilization 2-aminoethylphosphonate GntR/Others 11 6
TF PhnR2 - Ralstonia 2-aminoethylphosphonate utilization 2-aminoethylphosphonate GntR/Others 6 8
TF IolR - Bacillales Inositol utilization 2-deoxy-5-keto-D-gluconate 6-phosphate DeoR 11 9
TF IolR - Lactobacillaceae Inositol utilization 2-deoxy-5-keto-D-gluconate 6-phosphate DeoR 15 2
TF HexR - Alteromonadales Central carbohydrate metabolism 2-keto-3-deoxy-6-phosphogluconate RpiR 9 38
TF HexR - Burkholderia Central carbohydrate metabolism 2-keto-3-deoxy-6-phosphogluconate RpiR 8 38
TF HexR - Comamonadaceae Central carbohydrate metabolism 2-keto-3-deoxy-6-phosphogluconate RpiR 11 28
TF HexR - Enterobacteriales Central carbohydrate metabolism 2-keto-3-deoxy-6-phosphogluconate RpiR 12 45
TF HexR - Oceanospirillales/Alteromonadales Central carbohydrate metabolism 2-keto-3-deoxy-6-phosphogluconate RpiR 12 40
TF HexR - Pseudomonadaceae Central carbohydrate metabolism 2-keto-3-deoxy-6-phosphogluconate RpiR 8 44
TF HexR - Psychromonadaceae/Aeromonadales Central carbohydrate metabolism 2-keto-3-deoxy-6-phosphogluconate RpiR 6 79
TF HexR - Ralstonia Central carbohydrate metabolism 2-keto-3-deoxy-6-phosphogluconate RpiR 6 24
TF HexR - Shewanellaceae Central carbohydrate metabolism 2-keto-3-deoxy-6-phosphogluconate RpiR 16 316
TF HexR - Various betaproteobacteria Central carbohydrate metabolism 2-keto-3-deoxy-6-phosphogluconate RpiR 12 13
TF HexR - Vibrionales Central carbohydrate metabolism 2-keto-3-deoxy-6-phosphogluconate RpiR 10 190
TF HexR1 - Pseudomonadaceae Central carbohydrate metabolism 2-keto-3-deoxy-6-phosphogluconate RpiR 8 30
TF HexR2 - Oceanospirillales/Alteromonadales Central carbohydrate metabolism 2-keto-3-deoxy-6-phosphogluconate RpiR 12 12
TF KdgR - Bacillales Galacturonate utilization, Glucuronate utilization 2-keto-3-deoxygluconate LacI 11 13
TF KdgR - Bacteroidaceae Galacturonate utilization, Glucuronate utilization 2-keto-3-deoxygluconate LacI 11 62
TF KdgR - Enterobacteriales Pectin and polygalacturonate utlization 2-keto-3-deoxygluconate IclR 12 159
TF KdgR - Pasteurellales Pectin and polygalacturonate utlization 2-keto-3-deoxygluconate IclR 9 17
TF KdgR - Thermotogales Glucuronate utilization 2-keto-3-deoxygluconate IclR 11 26
TF KdgR - Vibrionales Pectin and polygalacturonate utlization 2-keto-3-deoxygluconate IclR 10 40
TF PtxS - Burkholderia 2-ketogluconate utilization 2-keto-D-gluconate LacI 8 11
TF PtxS - Enterobacteriales 2-ketogluconate utilization 2-keto-D-gluconate LacI 12 5
TF PtxS - Pseudomonadaceae 2-ketogluconate utilization 2-keto-D-gluconate LacI 8 10
TF PtxS - Ralstonia 2-ketogluconate utilization 2-keto-D-gluconate LacI 6 3
TF PrpR - Alcaligenaceae Methylcitrate utilization 2-methylcitrate GntR/Others 3 17
TF PrpR - Alteromonadales Methylcitrate utilization 2-methylcitrate GntR/Others 9 29
TF PrpR - Comamonadaceae Methylcitrate utilization 2-methylcitrate GntR/Others 11 2
TF PrpR - Desulfuromonadales Methylcitrate utilization 2-methylcitrate GntR/Others 9 6
TF PrpR - Moraxellaceae Methylcitrate utilization 2-methylcitrate GntR/Others 4 5
TF PrpR - Oceanospirillales/Alteromonadales Methylcitrate utilization 2-methylcitrate GntR/Others 12 25
TF PrpR - Pseudomonadaceae Methylcitrate utilization 2-methylcitrate GntR/Others 8 17
TF PrpR - Psychromonadaceae/Aeromonadales Methylcitrate utilization 2-methylcitrate GntR/Others 6 5
TF PrpR - Shewanellaceae Methylcitrate utilization 2-methylcitrate GntR/Others 16 48
TF PrpR - Vibrionales Methylcitrate utilization 2-methylcitrate GntR/Others 10 24
TF NtcA - Cyanobacteria Nitrogen assimilation 2-oxoglutarate CRP 14 228
TF GltC - Staphylococcaceae Glutamate metabolism 2-oxoglutarate, Glutamate LysR 7 24
TF GltC - Bacillales Glutamate metabolism 2-oxoglutarate, Glutamate, RocG, glutamate dehydrogenase LysR 11 20
TF GltC2 - Bacillales Glutamate metabolism 2-oxoglutarate, Glutamate, RocG, glutamate dehydrogenase LysR 11 6
TF NtdR - Bacillales Neotrehalosadiamine biosynthesis 3,3'-neotrehalosadiamine LacI 11 7
TF GenR - Corynebacteriaceae 3-hydroxybenzoate degradation 3-hydroxybenzoate, Gentisate IclR 8 6
TF LsrR - Enterobacteriales Biofilm formation, Quorum sensing 4,5-dihydroxypentan-2,3-dione SorC 12 19
TF HmgQ - Pseudomonadaceae Tyrosine degradation 4-hydroxyphenylpyruvate LysR 8 2
TF HmgQ - Shewanellaceae Tyrosine degradation 4-hydroxyphenylpyruvate LysR 16 33
TF HypR - Rhodobacterales Proline and 4-hydrohyproline utilization 4-hydroxyproline GntR/Others 15 10
TF HypR2 - Rhodobacterales Proline and 4-hydrohyproline utilization 4-hydroxyproline GntR/Others 15 17
TF HypR - Alteromonadales Proline and 4-hydrohyproline utilization 4-hydroxyproline, Proline GntR/Others 9 21
TF HypR - Enterobacteriales Proline and 4-hydrohyproline utilization 4-hydroxyproline, Proline GntR/Others 12 1
TF HypR - Oceanospirillales/Alteromonadales Proline and 4-hydrohyproline utilization 4-hydroxyproline, Proline GntR/Others 12 6
TF HypR - Pseudomonadaceae Proline and 4-hydrohyproline utilization 4-hydroxyproline, Proline GntR/Others 8 3
TF HypR - Psychromonadaceae/Aeromonadales Proline and 4-hydrohyproline utilization 4-hydroxyproline, Proline GntR/Others 6 8
TF HypR - Ralstonia Proline and 4-hydrohyproline utilization 4-hydroxyproline, Proline GntR/Others 6 2
TF HypR - Rhodospirillales Proline and 4-hydrohyproline utilization 4-hydroxyproline, Proline GntR/Others 9 1
TF HypR - Shewanellaceae Proline and 4-hydrohyproline utilization 4-hydroxyproline, Proline GntR/Others 16 96
TF HypR - Vibrionales Proline and 4-hydrohyproline utilization 4-hydroxyproline, Proline GntR/Others 10 5
TF IdnR - Enterobacteriales Idonate utilization 5-dehydro-D-gluconate, L-idonate LacI 12 7
TF PurR - Bacillales Purine metabolism 5-phosphoribosyl 1-pyrophosphate PurR 11 102
TF PurR - Lactobacillaceae Purine metabolism 5-phosphoribosyl 1-pyrophosphate PurR 15 76
TF PurR - Staphylococcaceae Purine metabolism 5-phosphoribosyl 1-pyrophosphate PurR 7 26
TF PurR - Streptococcaceae Purine metabolism 5-phosphoribosyl 1-pyrophosphate PurR 15 100
TF CceR (GapR) - Rhodobacterales Central carbohydrate metabolism 6-phosphogluconate LacI 15 177
TF AlsR - Bacillales Acetoin production Acetate LysR 11 8
TF AcoR - Bacillales Acetoin utilization Acetoin Fis 11 6
RNA Purine - Bacillales Purine metabolism Adenine, Guanine RF00167 11 49
RNA Purine - Clostridiaceae Purine metabolism Adenine, Guanine RF00167 20 41
RNA Purine - Lactobacillaceae Purine metabolism Adenine, Guanine RF00167 15 18
RNA Purine - Shewanellaceae Purine metabolism Adenine, Guanine RF00167 16 7
RNA Purine - Staphylococcaceae Purine metabolism Adenine, Guanine RF00167 7 7
RNA Purine - Streptococcaceae Purine metabolism Adenine, Guanine RF00167 15 11
RNA Purine - Thermotogales Purine metabolism Adenine, Guanine RF00167 11 2
RNA Purine - Vibrionales Purine metabolism Adenine, Guanine RF00167 10 6
TF AduR - Rhizobiales Adenosine utilization Adenosine LacI 15 4
TF NrtR - Bifidobacteriaceae NAD biosynthesis Adenosine diphosphate ribose NrtR 10 8
TF NrtR - Chloroflexia NAD biosynthesis Adenosine diphosphate ribose NrtR 5 27
TF NrtR - Clostridia-1 NAD biosynthesis Adenosine diphosphate ribose NrtR 8 6
TF NrtR - Comamonadaceae NAD biosynthesis Adenosine diphosphate ribose NrtR 11 12
TF NrtR - Corynebacteriaceae NAD biosynthesis Adenosine diphosphate ribose NrtR 8 6
TF NrtR - Cyanobacteria NAD biosynthesis Adenosine diphosphate ribose NrtR 14 17
TF NrtR - Enterobacteriales NAD biosynthesis Adenosine diphosphate ribose NrtR 12 6
TF NrtR - Flavobacteria NAD biosynthesis Adenosine diphosphate ribose NrtR 19 3
TF NrtR - Frankineae/Propionibacterineae/Pseudonocardiaceae NAD biosynthesis Adenosine diphosphate ribose NrtR 9 6
TF NrtR - Lactobacillaceae NAD biosynthesis Adenosine diphosphate ribose NrtR 15 8
TF NrtR - Micrococcineae NAD biosynthesis Adenosine diphosphate ribose NrtR 14 13
TF NrtR - Moraxellaceae NAD biosynthesis Adenosine diphosphate ribose NrtR 4 3
TF NrtR - Mycobacteriaceae NAD biosynthesis Adenosine diphosphate ribose NrtR 9 18
TF NrtR - Nocardiaceae NAD biosynthesis Adenosine diphosphate ribose NrtR 4 2
TF NrtR - Oceanospirillales/Alteromonadales NAD biosynthesis Adenosine diphosphate ribose NrtR 12 7
TF NrtR - Pseudomonadaceae NAD biosynthesis Adenosine diphosphate ribose NrtR 8 10
TF NrtR - Psychromonadaceae/Aeromonadales NAD biosynthesis Adenosine diphosphate ribose NrtR 6 6
TF NrtR - Rhizobiales NAD biosynthesis Adenosine diphosphate ribose NrtR 15 8
TF NrtR - Rhodobacterales NAD biosynthesis Adenosine diphosphate ribose NrtR 15 2
TF NrtR - Shewanellaceae NAD biosynthesis Adenosine diphosphate ribose NrtR 16 6
TF NrtR - Sphingobacteria NAD biosynthesis Adenosine diphosphate ribose NrtR 8 4
TF NrtR - Streptococcaceae NAD biosynthesis Adenosine diphosphate ribose NrtR 15 7
TF NrtR - Streptomycetaceae NAD biosynthesis Adenosine diphosphate ribose NrtR 4 19
TF NrtR - Various betaproteobacteria NAD biosynthesis Adenosine diphosphate ribose NrtR 12 6
TF NrtR - Vibrionales NAD biosynthesis Adenosine diphosphate ribose NrtR 10 9
TF NrtR2 - Cyanobacteria NAD biosynthesis Adenosine diphosphate ribose NrtR 14 5
RNA Cobalamin - Bacillales Cobalamin biosynthesis Adenosylcobalamin RF00174 11 18
RNA Cobalamin - Bacteroidaceae Cobalamin biosynthesis Adenosylcobalamin RF00174 11 65
RNA Cobalamin - Burkholderia Cobalamin biosynthesis Adenosylcobalamin RF00174 8 38
RNA Cobalamin - Caulobacterales Cobalamin biosynthesis Adenosylcobalamin RF00174 4 7
RNA Cobalamin - Chlorobiales Cobalamin biosynthesis Adenosylcobalamin RF00174 11 34
RNA Cobalamin - Chloroflexia Cobalamin biosynthesis Adenosylcobalamin RF00174 5 13
RNA Cobalamin - Clostridiaceae Cobalamin biosynthesis Adenosylcobalamin RF00174 20 50
RNA Cobalamin - Corynebacteriaceae Cobalamin biosynthesis Adenosylcobalamin RF00174 8 6
RNA Cobalamin - Cyanobacteria Cobalamin biosynthesis Adenosylcobalamin RF00174 14 20
RNA Cobalamin - Deinococcus-Thermus Cobalamin biosynthesis Adenosylcobalamin RF00174 5 12
RNA Cobalamin - Desulfovibrionales Cobalamin biosynthesis Adenosylcobalamin RF00174 10 23
RNA Cobalamin - Enterobacteriales Cobalamin biosynthesis Adenosylcobalamin RF00174 12 16
RNA Cobalamin - Lactobacillaceae Cobalamin biosynthesis Adenosylcobalamin RF00174 15 1
RNA Cobalamin - Mycobacteriaceae Cobalamin biosynthesis Adenosylcobalamin RF00174 9 21
RNA Cobalamin - Pseudomonadaceae Cobalamin biosynthesis Adenosylcobalamin RF00174 8 33
RNA Cobalamin - Ralstonia Cobalamin biosynthesis Adenosylcobalamin RF00174 6 7
RNA Cobalamin - Rhizobiales Cobalamin biosynthesis Adenosylcobalamin RF00174 15 57
RNA Cobalamin - Rhodobacterales Cobalamin biosynthesis Adenosylcobalamin RF00174 15 48
RNA Cobalamin - Shewanellaceae Cobalamin biosynthesis Adenosylcobalamin RF00174 16 34
RNA Cobalamin - Thermotogales Cobalamin biosynthesis Adenosylcobalamin RF00174 11 20
RNA Cobalamin - Vibrionales Cobalamin biosynthesis Adenosylcobalamin RF00174 10 13
TF PhrR - Pseudomonadaceae Light-dependent DNA repair Adenosylcobalamin, Blue light MerR 8 43
TF PhrR - Psychromonadaceae/Aeromonadales Light-dependent DNA repair Adenosylcobalamin, Blue light MerR 6 4
TF PhrR - Shewanellaceae Light-dependent DNA repair Adenosylcobalamin, Blue light MerR 16 21
TF PhrR - Vibrionales Light-dependent DNA repair Adenosylcobalamin, Heat shock MerR 10 16
RNA T-box(Ala) - Bacillales Amino acid metabolism Ala-tRNA RF00230 11 10
RNA T-box(Ala) - Clostridiaceae Amino acid metabolism Ala-tRNA RF00230 20 20
RNA T-box(Ala) - Lactobacillaceae Amino acid metabolism Ala-tRNA RF00230 15 15
RNA T-box(Ala) - Staphylococcaceae Amino acid metabolism Ala-tRNA RF00230 7 7
RNA T-box(Ala) - Streptococcaceae Amino acid metabolism Ala-tRNA RF00230 15 15
TF UxuR - Bacillales Glucuronate utilization Aldotetraouronic acid GntR/Others 11 7
TF AllR - Enterobacteriales Allantoin utilization Allantoin IclR 12 6
TF LacI - Enterobacteriales Lactose utilization Allolactose LacI 12 5
TF AlsR - Listeriaceae Allose utilization Allose-6-phosphate LacI 4 12
TF AlsR - Streptococcaceae Allose utilization Allose-6-phosphate LacI 15 2
TF MsmR - Bacillales Alpha-galactosides utilization Alpha-galactosides LacI 11 6
TF MsmR1 - Bifidobacteriaceae Alpha-galactosides utilization Alpha-galactosides LacI 10 4
TF AglR - Rhizobiales Alpha-glucosides utilization Alpha-glucoside, Maltose, Sucrose, Trehalose LacI 15 24
TF AglR - Rhodobacterales Alpha-glucosides utilization Alpha-glucoside, Maltose, Sucrose, Trehalose LacI 15 14
TF HTCS_Man-1 - Bacteroidaceae Alpha-mannans utilization Alpha-mannans [Other] 11 3
TF HTCS_Man-2 - Bacteroidaceae Alpha-mannans utilization Alpha-mannans [Other] 11 1
TF HTCS_Man-3 - Bacteroidaceae Alpha-mannans utilization Alpha-mannans [Other] 11 7
TF HTCS_Ara-1 - Bacteroidaceae Arabinan utilization Arabinan [Other] 11 12
TF HTCS_Aga-1 - Bacteroidaceae Arabinogalactan utilization Arabinogalactan oligosaccharides [Other] 11 3
TF AraC - Enterobacterales Arabinose utilization Arabinose AraC 12 56
TF AraR - Bacillales Arabinose utilization Arabinose GntR/Others 11 43
TF AraR - Bacteroidaceae Arabinose utilization Arabinose NrtR 11 28
TF AraR - Clostridia-1 Arabinose utilization Arabinose GntR/Others 8 26
TF AraR - Lactobacillaceae Arabinose utilization Arabinose GntR/Others 15 18
TF AraR - Shewanellaceae Arabinose utilization Arabinose GntR/Others 16 30
TF AraR - Thermotogales Arabinose utilization Arabinose GntR/Others 11 35
RNA T-box(Arg) - Bacillales Amino acid metabolism Arg-tRNA RF00230 11 2
RNA T-box(Arg) - Clostridiaceae Amino acid metabolism Arg-tRNA RF00230 20 21
RNA T-box(Arg) - Lactobacillaceae Amino acid metabolism Arg-tRNA RF00230 15 14
TF ArcR - Staphylococcaceae Arginine degradation Arginine CRP 7 6
TF ArgR - Alteromonadales Arginine biosynthesis, Arginine degradation Arginine ArgR 9 67
TF ArgR - Bacillales Arginine biosynthesis, Arginine degradation Arginine ArgR 11 84
TF ArgR - Bacteroidaceae Arginine biosynthesis Arginine ArgR 11 11
TF ArgR - Bifidobacteriaceae Arginine biosynthesis Arginine ArgR 10 36
TF ArgR - Chlamydiales Arginine biosynthesis Arginine ArgR 7 8
TF ArgR - Chlorobiales Arginine biosynthesis Arginine ArgR 11 18
TF ArgR - Clostridia-1 Arginine biosynthesis Arginine ArgR 8 75
TF ArgR - Clostridia-3 Arginine biosynthesis Arginine ArgR 14 56
TF ArgR - Corynebacteriaceae Arginine biosynthesis Arginine ArgR 8 20
TF ArgR - Deinococcus-Thermus Arginine biosynthesis Arginine ArgR 5 18
TF ArgR - Enterobacteriales Arginine biosynthesis, Arginine degradation Arginine ArgR 12 259
TF ArgR - Francisellaceae Arginine biosynthesis Arginine ArgR 3 6
TF ArgR - Frankineae/Propionibacterineae/Pseudonocardiaceae Arginine biosynthesis Arginine ArgR 9 14
TF ArgR - Lactobacillaceae Arginine biosynthesis, Arginine degradation Arginine ArgR 15 27
TF ArgR - Listeriaceae Arginine biosynthesis Arginine ArgR 4 19
TF ArgR - Micrococcineae Arginine biosynthesis Arginine ArgR 14 18
TF ArgR - Mycobacteriaceae Arginine biosynthesis Arginine ArgR 9 9
TF ArgR - Nocardiaceae Arginine biosynthesis Arginine ArgR 4 5
TF ArgR - Pasteurellales Arginine biosynthesis Arginine ArgR 9 69
TF ArgR - Psychromonadaceae/Aeromonadales Arginine biosynthesis, Arginine degradation Arginine ArgR 6 65
TF ArgR - Shewanellaceae Arginine biosynthesis, Arginine degradation Arginine ArgR 16 502
TF ArgR - Staphylococcaceae Arginine biosynthesis, Arginine degradation Arginine ArgR 7 65
TF ArgR - Streptococcaceae Arginine biosynthesis, Arginine degradation Arginine ArgR 15 125
TF ArgR - Streptomycetaceae Arginine biosynthesis Arginine ArgR 4 29
TF ArgR - Thermoanaerobacterales Arginine biosynthesis Arginine ArgR 7 15
TF ArgR - Thermotogales Arginine biosynthesis Arginine ArgR 11 10
TF ArgR - Vibrionales Arginine biosynthesis, Arginine degradation Arginine ArgR 10 122
TF LysG - Corynebacteriaceae Amino acid efflux Arginine, Histidine, Lysine LysR 8 8
TF ArsR - Desulfovibrionales Arsenic resistance Arsenate ArsR 10 32
TF ArsR - Corynebacteriaceae Arsenic resistance Arsenate, Arsenite ArsR 8 22
TF ArsR - Mycobacteriaceae Arsenic resistance Arsenate, Arsenite ArsR 9 17
TF ArsR - Nocardiaceae Arsenic resistance Arsenate, Arsenite ArsR 4 7
TF ArsR - Staphylococcaceae Arsenic resistance Arsenate, Arsenite ArsR 7 26
TF ArsR - Cyanobacteria Arsenic resistance Arsenite ArsR 14 19
TF AseR - Bacillales Arsenic resistance Arsenite ArsR 11 13
TF ArsR - Bacillales Arsenic resistance Arsenite, Cadmium, ion (Cd2+), Silver ion, (Ag+) ArsR 11 16
TF SgaR - Enterobacteriales Ascorbate utilization Ascorbate-6-phosphate LacI 12 34
TF SgaR - Pasteurellales Ascorbate utilization Ascorbate-6-phosphate LacI 9 4
TF SgaR - Psychromonadaceae/Aeromonadales Ascorbate utilization Ascorbate-6-phosphate LacI 6 12
TF SgaR - Vibrionales Ascorbate utilization Ascorbate-6-phosphate LacI 10 12
TF SgaR2 - Bifidobacteriaceae Ascorbate utilization Ascorbate-6-phosphate LacI 10 4
TF UlaR - Enterobacteriales Ascorbate utilization Ascorbate-6-phosphate DeoR 12 13
TF YiaJ - Enterobacteriales L-lyxose utilization Ascorbate-6-phosphate IclR 12 8
RNA T-box(Asn) - Bacillales Amino acid metabolism Asn-tRNA RF00230 11 8
RNA T-box(Asn) - Clostridiaceae Amino acid metabolism Asn-tRNA RF00230 20 24
RNA T-box(Asn) - Lactobacillaceae Amino acid metabolism Asn-tRNA RF00230 15 13
RNA T-box(Asn) - Staphylococcaceae Amino acid metabolism Asn-tRNA RF00230 7 7
RNA T-box(Asn) - Streptococcaceae Amino acid metabolism Asn-tRNA RF00230 15 3
RNA T-box(Asp) - Bacillales Amino acid metabolism Asp-tRNA RF00230 11 5
RNA T-box(Asp) - Clostridiaceae Amino acid metabolism Asp-tRNA RF00230 20 4
RNA T-box(Asp) - Lactobacillaceae Amino acid metabolism Asp-tRNA RF00230 15 16
RNA T-box(Asp) - Streptococcaceae Amino acid metabolism Asp-tRNA RF00230 15 2
TF AnsR - Bacillales Asparagine degradation Asparagine XRE 11 10
TF Btr - Bacillales Iron homeostasis Bacillibactin, Fe-Bacillibactin AraC 11 5
TF BceR - Bacillales Bacitracin resistance BceS, sensor histidine kinase (bacitracin) OmpR 11 7
TF BgaR - Bifidobacteriaceae Galactosides utilization Beta-galactosides LacI 10 22
TF BgaR - Micrococcineae Galactosides utilization Beta-galactosides LacI 14 6
TF BgaR - Streptomycetaceae Galactosides utilization Beta-galactosides LacI 4 8
TF EbgR - Enterobacteriales Galactosides utilization Beta-galactosides LacI 12 5
TF EbgR - Psychromonadaceae/Aeromonadales Galactosides utilization Beta-galactosides LacI 6 5
TF EbgR - Vibrionales Galactosides utilization Beta-galactosides LacI 10 30
TF GanR - Bacillales Galactan utilization Beta-galactosides LacI 11 8
TF SAV1329 - Streptomycetaceae Galactosides utilization Beta-galactosides LacI 4 4
TF BglR - Alteromonadales Beta-glucosides utilization Beta-glucoside LacI 9 35
TF BglR - Bifidobacteriaceae Beta-glucosides utilization Beta-glucoside LacI 10 10
TF BglR - Burkholderia Beta-glucosides utilization Beta-glucoside LacI 8 2
TF BglR - Deinococcus-Thermus Beta-glucosides utilization Beta-glucoside LacI 5 4
TF BglR - Enterobacteriales Beta-glucosides utilization Beta-glucoside LacI 12 2
TF BglR - Enterococcaceae Beta-glucosides utilization Beta-glucoside LacI 2 2
TF BglR - Listeriaceae Beta-glucosides utilization Beta-glucoside LacI 4 8
TF BglR - Shewanellaceae Beta-glucosides utilization Beta-glucoside LacI 16 24
TF BglR - Vibrionales Beta-glucosides utilization Beta-glucoside LacI 10 7
TF BglZ - Bacillales Beta-glucosides utilization Beta-glucoside LacI 11 8
TF Caur_1157 - Chloroflexia Beta-glucosides utilization Beta-glucoside LacI 5 7
TF Caur_3866 - Chloroflexia Beta-glucosides utilization Beta-glucoside LacI 5 5
TF BglR - Sphingomonadales Beta-glucosides utilization Beta-glucoside, Glucose LacI 7 7
TF BglR1 - Caulobacterales Beta-glucosides utilization Beta-glucoside, Glucose LacI 4 2
TF BglR2 - Caulobacterales Beta-glucosides utilization Beta-glucoside, Glucose LacI 4 10
TF BglR3 - Caulobacterales Beta-glucosides utilization Beta-glucoside, Glucose LacI 4 8
TF BglR - Bacillales Beta-glucosides utilization Beta-glucoside-6-phosphate GntR/Others 11 6
TF BglR - Staphylococcaceae Beta-glucosides utilization Beta-glucoside-6-phosphate GntR/Others 7 2
TF BglR2 - Listeriaceae Beta-glucosides utilization Beta-glucoside-6-phosphate LacI 4 16
TF AscG - Enterobacteriales Beta-glucosides utilization, Cellobiose utilization Beta-glucoside-6-phosphate, Cellobiose-6-phosphate LacI 12 28
TF BetI - Shewanellaceae Osmotic stress response Betaine TetR 16 8
TF BusR - Lactobacillaceae Betaine utilization Betaine GntR/Others 15 2
TF BusR - Streptococcaceae Betaine utilization Betaine GntR/Others 15 3
TF BioQ - Actinomycetales Biotin biosynthesis Biotin TetR 19 86
TF BioQ - Corynebacteriaceae Biotin biosynthesis Biotin TetR 8 24
TF BioQ - Frankineae/Propionibacterineae/Pseudonocardiaceae Biotin biosynthesis Biotin TetR 9 11
TF BioQ - Micrococcineae Biotin biosynthesis Biotin TetR 14 17
TF BioQ - Mycobacteriaceae Biotin biosynthesis Biotin TetR 9 16
TF BioQ - Nocardiaceae Biotin biosynthesis Biotin TetR 4 25
TF BirA - Alteromonadales Biotin biosynthesis Biotin BirA 9 17
TF BirA - Bacillales Biotin biosynthesis Biotin BirA 11 36
TF BirA - Chlorobiales Biotin biosynthesis Biotin BirA 11 10
TF BirA - Clostridia-1 Biotin biosynthesis Biotin BirA 8 19
TF BirA - Clostridia-2 Biotin biosynthesis Biotin BirA 3 5
TF BirA - Clostridia-3 Biotin biosynthesis Biotin BirA 14 25
TF BirA - Deinococcus-Thermus Biotin biosynthesis Biotin BirA 5 3
TF BirA - Desulfovibrionales Biotin biosynthesis Biotin BirA 10 6
TF BirA - Desulfuromonadales Biotin biosynthesis Biotin BirA 9 15
TF BirA - Enterobacteriales Biotin biosynthesis Biotin BirA 12 27
TF BirA - Lactobacillaceae Biotin biosynthesis Biotin BirA 15 10
TF BirA - Listeriaceae Biotin biosynthesis Biotin BirA 4 3
TF BirA - Oceanospirillales/Alteromonadales Biotin biosynthesis Biotin BirA 12 26
TF BirA - Pseudomonadaceae Biotin biosynthesis Biotin BirA 8 15
TF BirA - Psychromonadaceae/Aeromonadales Biotin biosynthesis Biotin BirA 6 12
TF BirA - Shewanellaceae Biotin biosynthesis Biotin BirA 16 32
TF BirA - Staphylococcaceae Biotin biosynthesis Biotin BirA 7 21
TF BirA - Streptococcaceae Biotin biosynthesis Biotin BirA 15 29
TF BirA - Thermoanaerobacterales Biotin biosynthesis Biotin BirA 7 11
TF BirA - Various betaproteobacteria Biotin biosynthesis Biotin BirA 12 13
TF BirA - Vibrionales Biotin biosynthesis Biotin BirA 10 20
TF BirA - Xanthomonadales Biotin biosynthesis Biotin BirA 4 5
TF MepR - Staphylococcaceae Multidrug resistance Bis-indoles, Distamycin MarR 7 12
TF BlaI - Staphylococcaceae Beta-lactam resistance BlaR, sensor histidine kinase (beta-lactam antibiotics) MarR 7 16
TF PpsR - Rhodobacterales Photosynthesis Blue light [Other] 15 74
TF CodY - Staphylococcaceae Amino acid metabolism Branched-chain amino acids CodY 7 516
TF CodY - Bacillales Amino acid metabolism Branched-chain amino acids, Guanosine triphosphate CodY 11 445
TF CodY - Streptococcaceae Amino acid metabolism Branched-chain amino acids, Guanosine triphosphate CodY 15 273
TF CadR - Corynebacteriaceae Cadmium resistance Cadmium, ion (Cd2+) ArsR 8 18
TF CzrA - Bacillales Cadmium resistance, Cobalt resistance, Copper resistance, Nickel resistance, Zinc resistance Cadmium, ion (Cd2+), Cobalt ion, (Co2+), Copper ion, (Cu2+), Nickel ion, (Ni2+), Silver ion, (Ag+), Zinc ion, (Zn2+) ArsR 11 16
TF CzrA - Clostridia-1 Cadmium resistance, Cobalt resistance, Copper resistance, Nickel resistance, Zinc resistance Cadmium, ion (Cd2+), Cobalt ion, (Co2+), Copper ion, (Cu2+), Nickel ion, (Ni2+), Silver ion, (Ag+), Zinc ion, (Zn2+) ArsR 8 7
TF CzrA - Clostridia-3 Cadmium resistance, Cobalt resistance, Copper resistance, Nickel resistance, Zinc resistance Cadmium, ion (Cd2+), Cobalt ion, (Co2+), Copper ion, (Cu2+), Nickel ion, (Ni2+), Silver ion, (Ag+), Zinc ion, (Zn2+) ArsR 14 13
TF CzrA - Listeriaceae Cadmium resistance, Cobalt resistance, Copper resistance, Nickel resistance, Zinc resistance Cadmium, ion (Cd2+), Cobalt ion, (Co2+), Copper ion, (Cu2+), Nickel ion, (Ni2+), Silver ion, (Ag+), Zinc ion, (Zn2+) ArsR 4 4
TF CadR-PbrR - Alteromonadales Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 9 9
TF CadR-PbrR - Burkholderia Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 8 14
TF CadR-PbrR - Caulobacterales Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 4 3
TF CadR-PbrR - Comamonadaceae Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 11 21
TF CadR-PbrR - Desulfovibrionales Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 10 2
TF CadR-PbrR - Desulfuromonadales Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 9 1
TF CadR-PbrR - Moraxellaceae Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 4 3
TF CadR-PbrR - Oceanospirillales/Alteromonadales Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 12 13
TF CadR-PbrR - Pasteurellales Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 9 4
TF CadR-PbrR - Pseudomonadaceae Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 8 14
TF CadR-PbrR - Psychromonadaceae/Aeromonadales Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 6 1
TF CadR-PbrR - Ralstonia Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 6 21
TF CadR-PbrR - Rhizobiales Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 15 19
TF CadR-PbrR - Rhodobacterales Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 15 33
TF CadR-PbrR - Rhodospirillales Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 9 3
TF CadR-PbrR - Shewanellaceae Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 16 10
TF CadR-PbrR - Sphingomonadales Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 7 6
TF CadR-PbrR - Various betaproteobacteria Cadmium resistance, Lead resistance Cadmium, ion (Cd2+), Lead ion, (Pb2+) MerR 12 7
TF ZntR - Shewanellaceae Cadmium resistance, Zinc resistance Cadmium, ion (Cd2+), Zinc ion, (Zn2+) MerR 16 16
TF LmrA - Bacillales Multidrug resistance Catechin, Fisetin, Quercetin TetR 11 5
TF CelR - Lactobacillaceae Cellobiose utilization CelB, cellobiose-specific PTS component EIIB, HPr, phosphocarrier protein BglG 15 1
TF CelR - Streptococcaceae Cellobiose utilization CelB, cellobiose-specific PTS component EIIB, HPr, phosphocarrier protein BglG 15 15
TF BglR - Thermotogales Beta-glucosides utilization Cellobiose ROK 11 7
TF CelR - Micrococcineae Cellobiose utilization Cellobiose LacI 14 10
TF CelR - Streptomycetaceae Cellobiose utilization Cellobiose LacI 4 49
TF CelR - Thermotogales Cellobiose utilization Cellobiose LacI 11 31
TF CldR - Bifidobacteriaceae Cellodextrin utilization Cellobiose LacI 10 2
TF CelQ - Streptococcaceae Cellobiose utilization Cellobiose-6-phosphate ROK 15 10
TF CelR - Enterobacteriales Cellobiose utilization Cellobiose-6-phosphate GntR/Others 12 8
TF CelR - Vibrionales Cellobiose utilization Cellobiose-6-phosphate LacI 10 10
TF CelR2 - Enterobacteriales Cellobiose utilization Cellobiose-6-phosphate LacI 12 2
TF CelR2 - Vibrionales Cellobiose utilization Cellobiose-6-phosphate LacI 10 6
TF CelR3 - Vibrionales Cellobiose utilization Cellobiose-6-phosphate LacI 10 3
TF ChiR - Thermotogales Chitobiose utilization Chitobiose ROK 11 8
TF MarR - Enterobacteriales Antibiotic resistance Chloramphenicol, Salicylate, Tetracycline MarR 12 10
TF BetI - Enterobacteriales Glycine betaine synthesis Choline TetR 12 14
TF GbsR (YuaC) - Bacillales Glycine betaine synthesis Choline MarR 11 5
TF HTCS_Hya - Bacteroidaceae Chondroitin sulphate utilization, Hyaluronan utilization Chondroitin sulphate, Hyaluronan [Other] 11 13
TF AcnR - Corynebacteriaceae Tricarboxylic acid cycle Citrate TetR 8 8
TF AcnR - Frankineae/Propionibacterineae/Pseudonocardiaceae Tricarboxylic acid cycle Citrate TetR 9 9
TF AcnR - Mycobacteriaceae Tricarboxylic acid cycle Citrate TetR 9 15
TF AcnR - Nocardiaceae Tricarboxylic acid cycle Citrate TetR 4 8
TF CcpC - Bacillales Citrate metabolism Citrate LysR 11 12
TF CitB - Corynebacteriaceae Citrate utilization Citrate CitB 8 5
TF CitT - Bacillales Citrate utilization Citrate CitB 11 8
TF RcnR - Enterobacteriales Cobalt resistance, Nickel resistance Cobalt ion, (Co2+), Nickel ion, (Ni2+) CsoR 12 16
TF ComA - Bacillales Competence ComP, sensor histidine kinase (ComX) LuxR 11 16
TF CsoR - Bacillales Copper resistance Copper ion, (Cu+) CsoR 11 25
TF CsoR - Bifidobacteriaceae Copper homeostasis Copper ion, (Cu+) CsoR 10 12
TF CsoR - Corynebacteriaceae Copper resistance Copper ion, (Cu+) CsoR 8 11
TF CsoR - Listeriaceae Copper resistance Copper ion, (Cu+) CsoR 4 4
TF CsoR - Micrococcineae Copper resistance Copper ion, (Cu+) CsoR 14 23
TF CsoR - Nocardiaceae Copper resistance Copper ion, (Cu+) CsoR 4 7
TF CueR - Alteromonadales Copper resistance Copper ion, (Cu+) MerR 9 1
TF CueR - Burkholderia Copper resistance Copper ion, (Cu+) MerR 8 12
TF CueR - Caulobacterales Copper resistance Copper ion, (Cu+) MerR 4 7
TF CueR - Comamonadaceae Copper resistance Copper ion, (Cu+) MerR 11 25
TF CueR - Enterobacteriales Copper resistance Copper ion, (Cu+) MerR 12 30
TF CueR - Moraxellaceae Copper resistance Copper ion, (Cu+) MerR 4 4
TF CueR - Oceanospirillales/Alteromonadales Copper resistance Copper ion, (Cu+) MerR 12 7
TF CueR - Pasteurellales Copper resistance Copper ion, (Cu+) MerR 9 14
TF CueR - Pseudomonadaceae Copper resistance Copper ion, (Cu+) MerR 8 19
TF CueR - Psychromonadaceae/Aeromonadales Copper resistance Copper ion, (Cu+) MerR 6 13
TF CueR - Ralstonia Copper resistance Copper ion, (Cu+) MerR 6 18
TF CueR - Rhizobiales Copper resistance Copper ion, (Cu+) MerR 15 22
TF CueR - Rhodobacterales Copper resistance Copper ion, (Cu+) MerR 15 18
TF CueR - Rhodospirillales Copper resistance Copper ion, (Cu+) MerR 9 7
TF CueR - Shewanellaceae Copper resistance Copper ion, (Cu+) MerR 16 26
TF CueR - Sphingomonadales Copper resistance Copper ion, (Cu+) MerR 7 1
TF CueR - Various betaproteobacteria Copper resistance Copper ion, (Cu+) MerR 12 7
TF CueR - Vibrionales Copper resistance Copper ion, (Cu+) MerR 10 25
TF CueR - Xanthomonadales Copper resistance Copper ion, (Cu+) MerR 4 2
TF CueR2 - Shewanellaceae Copper resistance Copper ion, (Cu+) MerR 16 3
TF YcnK - Bacillales Copper homeostasis Copper ion, (Cu+) DeoR 11 5
TF CopR - Lactobacillaceae Copper homeostasis Copper ion, (Cu2+) CopY 15 34
TF CopR - Streptococcaceae Copper homeostasis Copper ion, (Cu2+) CopY 15 39
TF CssR - Bacillales Protein secretion stress response CssS, sensor histidine kinase OmpR 11 25
TF OhrR - Bacillales Peroxide stress response Cumene hydroperoxide, Diamide, Hydrogen peroxide, tert-Butyl hydroperoxide MarR 11 11
TF Crp - Cyanobacteria Cyclic 3',5'-AMP CRP 14 106
TF Crp - Enterobacteriales Carbon catabolism Cyclic 3',5'-AMP CRP 12 2301
TF Crp - Shewanellaceae Carbon catabolism Cyclic 3',5'-AMP CRP 16 2713
TF GlxR - Corynebacteriaceae Carbohydrate metabolism, Energy metabolism Cyclic 3',5'-AMP CRP 8 562
RNA GEMM_RNA_motif - Bacillales Second messenger response Cyclic diguanylate RF01051 11 9
RNA GEMM_RNA_motif - Clostridiaceae Second messenger response Cyclic diguanylate RF01051 20 29
RNA GEMM_RNA_motif - Cyanobacteria Second messenger response Cyclic diguanylate RF01051 14 6
RNA GEMM_RNA_motif - Deinococcus-Thermus Second messenger response Cyclic diguanylate RF01051 5 3
RNA GEMM_RNA_motif - Desulfovibrionales Second messenger response Cyclic diguanylate RF01051 10 5
RNA GEMM_RNA_motif - Enterobacteriales Second messenger response Cyclic diguanylate RF01051 12 1
RNA GEMM_RNA_motif - Ralstonia Second messenger response Cyclic diguanylate RF01051 6 1
RNA GEMM_RNA_motif - Shewanellaceae Second messenger response Cyclic diguanylate RF01051 16 20
RNA GEMM_RNA_motif - Vibrionales Second messenger response Cyclic diguanylate RF01051 10 15
RNA T-box(Cys) - Bacillales Amino acid metabolism Cys-tRNA RF00230 11 11
RNA T-box(Cys) - Clostridiaceae Amino acid metabolism Cys-tRNA RF00230 20 21
RNA T-box(Cys) - Lactobacillaceae Amino acid metabolism Cys-tRNA RF00230 15 1
RNA T-box(Cys) - Staphylococcaceae Amino acid metabolism Cys-tRNA RF00230 7 7
TF CymR - Bacillales Cysteine metabolism CysK, cysteine synthetase, O-acetyl-L-serine Rrf2 11 65
TF CymR - Staphylococcaceae Cysteine metabolism CysK, cysteine synthetase, O-acetyl-L-serine Rrf2 7 69
TF AlsR - Enterobacteriales Allose utilization D-allose RpiR 12 5
TF LacR - Lactobacillaceae Lactose utilization D-galactose-6-phosphate DeoR 15 2
TF LacR - Streptococcaceae Galactose utilization, Lactose utilization D-galactose-6-phosphate DeoR 15 37
TF GntR2 - Bacillales Gluconate utilization D-gluconate LacI 11 8
TF GntR - Bacillales Gluconate utilization D-gluconate, D-glucono-delta-lactone GntR/Others 11 3
TF GlxR - Bifidobacteriaceae Glycerate utilization D-glycerate LacI 10 2
TF SdaR - Clostridia-1 Glycerate utilization D-glycerate SdaR 8 5
TF SdaR - Enterococcaceae Glycerate utilization D-glycerate SdaR 2 2
TF SdaR - Lactobacillaceae Glycerate utilization D-glycerate SdaR 15 5
TF SdaR - Pseudomonadaceae Glycerate utilization D-glycerate SdaR 8 13
TF SdaR - Rhodospirillales Glycerate utilization D-glycerate SdaR 9 3
TF SdaR - Vibrionales Glycerate utilization D-glycerate SdaR 10 7
TF SdaR - Xanthomonadales Glycerate utilization D-glycerate SdaR 4 2
TF RspR - Enterobacteriales L-gulonate utilization D-mannonate, L-gulonate GntR/Others 12 9
TF RspR - Oceanospirillales/Alteromonadales L-gulonate utilization D-mannonate, L-gulonate GntR/Others 12 1
TF RspR - Rhodobacterales L-gulonate utilization D-mannonate, L-gulonate GntR/Others 15 3
TF ClgR - Corynebacteriaceae Proteolysis DNA damage XRE 8 39
TF LexA - Alcaligenaceae SOS response DNA damage LexA 3 19
TF LexA - Alteromonadales SOS response DNA damage LexA 9 111
TF LexA - Bacillales SOS response DNA damage LexA 11 206
TF LexA - Bifidobacteriaceae SOS response DNA damage LexA 10 97
TF LexA - Burkholderia SOS response DNA damage LexA 8 75
TF LexA - Caulobacterales SOS response DNA damage LexA 4 47
TF LexA - Chloroflexia SOS response DNA damage LexA 5 52
TF LexA - Clostridia-1 SOS response DNA damage LexA 8 27
TF LexA - Clostridia-2 SOS response DNA damage LexA 3 11
TF LexA - Clostridia-3 SOS response DNA damage LexA 14 102
TF LexA - Comamonadaceae SOS response DNA damage LexA 11 71
TF LexA - Corynebacteriaceae SOS response DNA damage LexA 8 109
TF LexA - Cyanobacteria SOS response DNA damage LexA 14 26
TF LexA - Desulfovibrionales SOS response DNA damage LexA 10 4
TF LexA - Desulfuromonadales SOS response DNA damage LexA 9 11
TF LexA - Enterobacteriales SOS response DNA damage LexA 12 265
TF LexA - Frankineae/Propionibacterineae/Pseudonocardiaceae SOS response DNA damage LexA 9 68
TF LexA - Lactobacillaceae SOS response DNA damage LexA 15 99
TF LexA - Listeriaceae SOS response DNA damage LexA 4 48
TF LexA - Micrococcineae SOS response DNA damage LexA 14 62
TF LexA - Mycobacteriaceae SOS response DNA damage LexA 9 83
TF LexA - Nocardiaceae SOS response DNA damage LexA 4 33
TF LexA - Oceanospirillales/Alteromonadales SOS response DNA damage LexA 12 91
TF LexA - Pasteurellales SOS response DNA damage LexA 9 96
TF LexA - Planctomycetes SOS response DNA damage LexA 5 9
TF LexA - Pseudomonadaceae SOS response DNA damage LexA 8 101
TF LexA - Psychromonadaceae/Aeromonadales SOS response DNA damage LexA 6 77
TF LexA - Ralstonia SOS response DNA damage LexA 6 62
TF LexA - Rhizobiales SOS response DNA damage LexA 15 212
TF LexA - Rhodobacterales SOS response DNA damage LexA 15 128
TF LexA - Rhodospirillales SOS response DNA damage LexA 9 52
TF LexA - Shewanellaceae SOS response DNA damage LexA 16 192
TF LexA - Sphingomonadales SOS response DNA damage LexA 7 61
TF LexA - Staphylococcaceae SOS response DNA damage LexA 7 85
TF LexA - Streptomycetaceae SOS response DNA damage LexA 4 26
TF LexA - Various betaproteobacteria SOS response DNA damage LexA 12 12
TF LexA - Vibrionales SOS response DNA damage LexA 10 186
TF LexA - Xanthomonadales SOS response DNA damage LexA 4 7
TF LexA2 - Pseudomonadaceae SOS response DNA damage LexA 8 5
TF LexA2 - Xanthomonadales SOS response DNA damage LexA 4 2
TF SocR - Rhizobiales Santhopine utilization Deoxyfructosyl glutamine, Mannopine LacI 15 12
TF XapR - Enterobacteriales Xanthosine utilization Deoxyinosine, Xanthosine LysR 12 5
TF NrdR - Alcaligenaceae Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 3 6
TF NrdR - Alteromonadales Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 9 24
TF NrdR - Bacillales Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 11 27
TF NrdR - Bifidobacteriaceae Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 10 31
TF NrdR - Burkholderia Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 8 20
TF NrdR - Caulobacterales Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 4 21
TF NrdR - Chlamydiales Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 7 14
TF NrdR - Chloroflexia Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 5 8
TF NrdR - Clostridia-1 Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 8 31
TF NrdR - Clostridia-2 Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 3 12
TF NrdR - Clostridia-3 Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 14 49
TF NrdR - Comamonadaceae Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 11 28
TF NrdR - Corynebacteriaceae Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 8 26
TF NrdR - Cyanobacteria Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 14 8
TF NrdR - Deinococcus-Thermus Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 5 5
TF NrdR - Desulfuromonadales Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 9 21
TF NrdR - Enterobacteriales Ribonucleotide reductases Deoxyribonucleotides NrdR 12 70
TF NrdR - Frankineae/Propionibacterineae/Pseudonocardiaceae Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 9 17
TF NrdR - Lactobacillaceae Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 15 81
TF NrdR - Listeriaceae Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 4 17
TF NrdR - Micrococcineae Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 14 44
TF NrdR - Moraxellaceae Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 4 8
TF NrdR - Mycobacteriaceae Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 9 43
TF NrdR - Nocardiaceae Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 4 10
TF NrdR - Oceanospirillales/Alteromonadales Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 12 39
TF NrdR - Pasteurellales Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 9 41
TF NrdR - Planctomycetes Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 5 14
TF NrdR - Pseudomonadaceae Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 8 35
TF NrdR - Psychromonadaceae/Aeromonadales Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 6 26
TF NrdR - Ralstonia Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 6 18
TF NrdR - Rhizobiales Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 15 39
TF NrdR - Rhodobacterales Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 15 17
TF NrdR - Rhodospirillales Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 9 21
TF NrdR - Shewanellaceae Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 16 64
TF NrdR - Sphingomonadales Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 7 17
TF NrdR - Staphylococcaceae Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 7 30
TF NrdR - Streptococcaceae Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 15 63
TF NrdR - Streptomycetaceae Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 4 16
TF NrdR - Thermoanaerobacterales Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 7 18
TF NrdR - Thermotogales Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 11 60
TF NrdR - Various betaproteobacteria Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 12 20
TF NrdR - Vibrionales Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 10 40
TF NrdR - Xanthomonadales Deoxyribonucleotide biosynthesis Deoxyribonucleotides NrdR 4 9
TF DeoR - Bacillales Deoxynucleoside utilization Deoxyribose-5-phosphate SorC 11 9
TF DeoR - Lactobacillaceae Deoxynucleoside utilization Deoxyribose-5-phosphate SorC 15 7
TF NmlR - Alteromonadales Carbonyl stress response Diamide MerR 9 1
TF NmlR - Burkholderia Carbonyl stress response Diamide MerR 8 8
TF NmlR - Comamonadaceae Carbonyl stress response Diamide MerR 11 2
TF NmlR - Pasteurellales Carbonyl stress response Diamide MerR 9 4
TF NmlR - Pseudomonadaceae Carbonyl stress response Diamide MerR 8 1
TF NmlR - Ralstonia Carbonyl stress response Diamide MerR 6 1
TF NmlR - Rhizobiales Carbonyl stress response Diamide MerR 15 2
TF NmlR - Shewanellaceae Carbonyl stress response Diamide MerR 16 5
TF NmlR - Various betaproteobacteria Carbonyl stress response Diamide MerR 12 2
TF NmlR - Vibrionales Carbonyl stress response Diamide MerR 10 2
TF NmlR - Xanthomonadales Carbonyl stress response Diamide MerR 4 1
TF YodB/CatR - Bacillales Oxidative stress response Diamide, Quinone HxlR 11 42
TF EutR - Mycobacteriaceae Ethanolamine utilization Ethanolamine RpiR 9 6
TF EutR - Oceanospirillales/Alteromonadales Ethanolamine utilization Ethanolamine RpiR 12 2
TF EutR - Pseudomonadaceae Ethanolamine utilization Ethanolamine RpiR 8 3
TF EutR - Rhizobiales Ethanolamine utilization Ethanolamine RpiR 15 24
TF EutR - Rhodobacterales Ethanolamine utilization Ethanolamine RpiR 15 30
TF AcrR - Enterobacteriales Multidrug resistance Ethidium bromide, Proflavin, Rhodamine 6G TetR 12 24
TF GlnR - Bacillales Nitrogen assimilation Feedback-inhibited GlnA, glutamine synthetase MerR 11 45
TF GlnR - Staphylococcaceae Nitrogen assimilation Feedback-inhibited GlnA, glutamine synthetase MerR 7 14
TF TnrA - Bacillales Nitrogen assimilation Feedback-inhibited GlnA, glutamine synthetase, NrgA, ammonium uptake protein, NrgB, ammonium uptake protein MerR 11 304
TF VanR - Corynebacteriaceae Vanillate utilization Ferulic acid, Vanillate PadR 8 4
TF PadR - Bacillales Phenolic acid stress response Ferulic acid, p-Coumaric acid PadR 11 5
TF PadR - Lactobacillaceae Phenolic acid stress response Ferulic acid, p-Coumaric acid PadR 15 6
TF PadR - Streptococcaceae Phenolic acid stress response Ferulic acid, p-Coumaric acid PadR 15 2
TF QdoR - Bacillales Multidrug resistance Fisetin, Galangin, Quercetin, Tamarixetin TetR 11 7
RNA FMN - Alteromonadales Riboflavin biosynthesis Flavin mononucleotide RF00050 9 1
RNA FMN - Bacillales Riboflavin biosynthesis Flavin mononucleotide RF00050 11 20
RNA FMN - Bifidobacteriaceae Riboflavin biosynthesis Flavin mononucleotide RF00050 9 9
RNA FMN - Burkholderia Riboflavin biosynthesis Flavin mononucleotide RF00050 8 9
RNA FMN - Caulobacterales Riboflavin biosynthesis Flavin mononucleotide RF00050 4 1
RNA FMN - Chlorobiales Riboflavin biosynthesis Flavin mononucleotide RF00050 11 2
RNA FMN - Chloroflexia Riboflavin biosynthesis Flavin mononucleotide RF00050 5 8
RNA FMN - Clostridia-2 Riboflavin biosynthesis Flavin mononucleotide RF00050 3 8
RNA FMN - Clostridia-3 Riboflavin biosynthesis Flavin mononucleotide RF00050 14 22
RNA FMN - Clostridiaceae Riboflavin biosynthesis Flavin mononucleotide RF00050 20 38
RNA FMN - Comamonadaceae Riboflavin biosynthesis Flavin mononucleotide RF00050 11 4
RNA FMN - Corynebacteriaceae Riboflavin biosynthesis Flavin mononucleotide RF00050 8 3
RNA FMN - Deinococcus-Thermus Riboflavin biosynthesis Flavin mononucleotide RF00050 5 5
RNA FMN - Desulfovibrionales Riboflavin biosynthesis Flavin mononucleotide RF00050 10 8
RNA FMN - Desulfuromonadales Riboflavin biosynthesis Flavin mononucleotide RF00050 9 3
RNA FMN - Enterobacteriales Riboflavin biosynthesis Flavin mononucleotide RF00050 12 12
RNA FMN - Francisellaceae Riboflavin biosynthesis Flavin mononucleotide RF00050 3 3
RNA FMN - Lactobacillaceae Riboflavin biosynthesis Flavin mononucleotide RF00050 15 19
RNA FMN - Moraxellaceae Riboflavin biosynthesis Flavin mononucleotide RF00050 4 2
RNA FMN - Oceanospirillales/Alteromonadales Riboflavin biosynthesis Flavin mononucleotide RF00050 12 4
RNA FMN - Pasteurellales Riboflavin biosynthesis Flavin mononucleotide RF00050 9 9
RNA FMN - Pseudomonadaceae Riboflavin biosynthesis Flavin mononucleotide RF00050 8 8
RNA FMN - Psychromonadaceae/Aeromonadales Riboflavin biosynthesis Flavin mononucleotide RF00050 6 5
RNA FMN - Ralstonia Riboflavin biosynthesis Flavin mononucleotide RF00050 6 6
RNA FMN - Rhizobiales Riboflavin biosynthesis Flavin mononucleotide RF00050 15 12
RNA FMN - Rhodobacterales Riboflavin biosynthesis Flavin mononucleotide RF00050 15 7
RNA FMN - Rhodospirillales Riboflavin biosynthesis Flavin mononucleotide RF00050 9 4
RNA FMN - Shewanellaceae Riboflavin biosynthesis Flavin mononucleotide RF00050 16 15
RNA FMN - Staphylococcaceae Riboflavin biosynthesis Flavin mononucleotide RF00050 7 14
RNA FMN - Streptococcaceae Riboflavin biosynthesis Flavin mononucleotide RF00050 15 19
RNA FMN - Streptomycetaceae Riboflavin biosynthesis Flavin mononucleotide RF00050 4 4
RNA FMN - Thermoanaerobacterales Riboflavin biosynthesis Flavin mononucleotide RF00050 7 9
RNA FMN - Thermotogales Riboflavin biosynthesis Flavin mononucleotide RF00050 11 8
RNA FMN - Various betaproteobacteria Riboflavin biosynthesis Flavin mononucleotide RF00050 12 1
RNA FMN - Vibrionales Riboflavin biosynthesis Flavin mononucleotide RF00050 10 8
RNA FMN - Xanthomonadales Riboflavin biosynthesis Flavin mononucleotide RF00050 4 3
TF RbkR - Archaeoglobales Riboflavin biosynthesis Flavin mononucleotide [Other] 3 5
TF RbkR - Halobacteriales Riboflavin biosynthesis Flavin mononucleotide [Other] 11 14
TF RbkR - Methanomicrobiales Riboflavin biosynthesis Flavin mononucleotide [Other] 5 6
TF RbkR - Methanosarcinales Riboflavin biosynthesis Flavin mononucleotide [Other] 6 9
TF RbkR - Sulfolobales Riboflavin biosynthesis Flavin mononucleotide [Other] 5 12
TF RbkR - Thermococcales Riboflavin biosynthesis Flavin mononucleotide [Other] 7 13
TF RbkR - Thermoplasmatales Riboflavin biosynthesis Flavin mononucleotide [Other] 4 13
TF RbkR - Thermoproteales Riboflavin biosynthesis Flavin mononucleotide [Other] 5 23
TF YetL - Bacillales Flavonoids response Flavonoids MarR 11 4
TF HxlR - Bacillales Ribulose monophosphate pathway Formaldehyde HxlR 11 6
TF NmlR - Streptococcaceae Carbonyl stress response Formaldehyde, Methylglyoxal, Nitric oxide MerR 15 14
TF FdsR - Alcaligenaceae Formate oxydation Formate ModE 3 9
TF FdsR - Burkholderia Formate oxydation Formate ModE 8 27
TF FdsR - Comamonadaceae Formate oxydation Formate ModE 11 4
TF FdsR - Oceanospirillales/Alteromonadales Formate oxydation Formate ModE 12 4
TF FdsR - Pseudomonadaceae Formate oxydation Formate ModE 8 4
TF FdsR - Ralstonia Formate oxydation Formate ModE 6 14
TF PflR - Shewanellaceae Formate metabolism Formate LysR 16 35
TF FruR - Micrococcineae Fructose utilization Fructose LacI 14 9
TF HTCS_Fru - Bacteroidaceae Fructose utilization, Fructosides utilization Fructose [Other] 11 23
TF CggR - Lactobacillaceae Glycolysis Fructose-1,6-bisphosphate SorC 15 11
TF CcpA - Lactobacillaceae Carbon catabolism Fructose-1,6-bisphosphate, HPr, phosphocarrier protein LacI 15 561
TF CcpA - Streptococcaceae Global catabolite repression Fructose-1,6-bisphosphate, HPr, phosphocarrier protein LacI 15 968
TF CggR - Bacillales Glycolysis Fructose-1,6-diphosphate SorC 11 12
TF CggR - Staphylococcaceae Glycolysis Fructose-1,6-diphosphate SorC 7 7
TF FruR - Enterobacteriales Central carbohydrate metabolism Fructose-1,6-diphosphate, Fructose-1-phosphate LacI 12 213
TF FruR - Oceanospirillales/Alteromonadales Fructose utilization Fructose-1,6-diphosphate, Fructose-1-phosphate LacI 12 9
TF FruR - Pasteurellales Fructose utilization Fructose-1,6-diphosphate, Fructose-1-phosphate LacI 9 3
TF FruR - Pseudomonadaceae Fructose utilization Fructose-1,6-diphosphate, Fructose-1-phosphate LacI 8 16
TF FruR - Psychromonadaceae/Aeromonadales Fructose utilization Fructose-1,6-diphosphate, Fructose-1-phosphate LacI 6 22
TF FruR - Vibrionales Fructose utilization Fructose-1,6-diphosphate, Fructose-1-phosphate LacI 10 60
TF CcpA - Staphylococcaceae Carbon catabolism Fructose-1,6-diphosphate, HPr, phosphocarrier protein LacI 7 391
TF FruR - Thermotogales Fructose utilization Fructose-1-phosphate DeoR 11 2
TF FruR2 - Comamonadaceae Fructose utilization Fructose-1-phosphate LacI 11 8
TF FruR2 - Ralstonia Fructose utilization Fructose-1-phosphate LacI 6 8
TF FruR2 - Rhodobacterales Fructose utilization Fructose-1-phosphate LacI 15 3
TF FruR2 - Rhodospirillales Fructose utilization Fructose-1-phosphate LacI 9 8
TF FruR2 - Various betaproteobacteria Fructose utilization Fructose-1-phosphate LacI 12 4
TF FruR2 - Xanthomonadales Fructose utilization Fructose-1-phosphate LacI 4 11
TF FruR - Bacillales Fructose utilization Fructose-6-phosphate DeoR 11 17
TF FruR - Corynebacteriaceae Fructose utilization Fructose-6-phosphate DeoR 8 4
TF FruR - Lactobacillaceae Fructose utilization Fructose-6-phosphate DeoR 15 18
TF FruR - Staphylococcaceae Fructose utilization Fructose-6-phosphate DeoR 7 18
TF FruR - Streptococcaceae Fructose utilization Fructose-6-phosphate DeoR 15 34
TF FrlR - Bacillales Fructoselysine utilization Fructoselysine 6-phosphate GntR/Others 11 12
TF FucR - Bacteroidaceae Fucose utilization Fucose GntR/Others 11 8
TF FucR - Bifidobacteriaceae Fucose utilization Fucose LacI 10 4
TF GarR - Bacillales Galactarate utilization Galactarate GntR/Others 11 3
TF GosR - Bifidobacteriaceae Galactan utilization, Galactooligosaccharide utilization Galactobiose LacI 10 17
TF DgoR - Enterobacteriales Galactonate utilization Galactonate GntR/Others 12 19
TF DgoR - Oceanospirillales/Alteromonadales Galactonate utilization Galactonate GntR/Others 12 1
TF AgaR - Enterobacteriales N-acetylgalactosamine utilization Galactosamine-6-phosphate, N-acetylgalactosamine-6-phosphate DeoR 12 19
TF AgaR - Pasteurellales N-acetylgalactosamine utilization Galactosamine-6-phosphate, N-acetylgalactosamine-6-phosphate DeoR 9 1
TF AgaR - Psychromonadaceae/Aeromonadales N-acetylgalactosamine utilization Galactosamine-6-phosphate, N-acetylgalactosamine-6-phosphate DeoR 6 12
TF AgaR - Shewanellaceae N-acetylgalactosamine utilization Galactosamine-6-phosphate, N-acetylgalactosamine-6-phosphate DeoR 16 8
TF AgaR - Vibrionales N-acetylgalactosamine utilization Galactosamine-6-phosphate, N-acetylgalactosamine-6-phosphate DeoR 10 11
TF AgaR - Xanthomonadales N-acetylgalactosamine utilization Galactosamine-6-phosphate, N-acetylgalactosamine-6-phosphate DeoR 4 2
TF AgaR2 - Enterobacteriales N-acetylgalactosamine utilization Galactosamine-6-phosphate, N-acetylgalactosamine-6-phosphate DeoR 3 4
TF GalR - Alteromonadales Galactose utilization Galactose LacI 9 6
TF GalR - Bacteroidaceae Galactose utilization Galactose GntR/Others 11 3
TF GalR - Desulfovibrionales Galactose utilization Galactose LacI 10 5
TF GalR - Lactobacillaceae Galactose utilization, Galactosides utilization Galactose LacI 15 30
TF GalR - Pasteurellales Galactose utilization Galactose LacI 9 16
TF GalR - Shewanellaceae Galactose utilization Galactose LacI 16 2
TF GalR - Streptococcaceae Galactose utilization Galactose LacI 15 20
TF GalR - Thermotogales Galactosides utilization Galactose LacI 11 19
TF GalR - Vibrionales Galactose utilization Galactose LacI 10 30
TF GalR/GalS - Enterobacteriales Galactose utilization Galactose LacI 12 78
TF GalR2 - Bifidobacteriaceae Galactose utilization Galactose LacI 10 5
TF LacR - Staphylococcaceae Lactose utilization Galactose-6-phosphate DeoR 7 4
TF ExuR - Clostridia-1 Galacturonate utilization Galacturonate LacI 8 20
TF ExuR - Enterobacteriales Galacturonate utilization Galacturonate GntR/Others 12 48
TF HTCS_Rgu-1 - Bacteroidaceae Rhamnogalacturonides utilization Galacturonate oligosaccharides, Rhamogalacturonate oligosaccharides [Other] 11 26
TF AlgR - Shewanellaceae Alginate utilization Galacturonate, Glucuronate GntR/Others 16 2
TF ExuR - Bacillales Galacturonate utilization, Glucuronate utilization Galacturonate, Glucuronate LacI 11 5
TF ExuR - Lactobacillaceae Galacturonate utilization, Glucuronate utilization Galacturonate, Glucuronate LacI 15 2
TF UxaR - Bacteroidaceae Galacturonate utilization, Glucuronate utilization Galacturonate, Glucuronate LacI 11 12
TF UxuR1 - Rhodobacterales Galacturonate utilization, Glucuronate utilization Galacturonate, Glucuronate GntR/Others 15 3
TF GabR - Alcaligenaceae Gamma-aminobutyrate utilization Gamma-aminobutyric acid GntR/MocR 3 7
TF GabR - Burkholderia Gamma-aminobutyrate utilization Gamma-aminobutyric acid GntR/MocR 8 16
TF GabR - Comamonadaceae Gamma-aminobutyrate utilization Gamma-aminobutyric acid GntR/MocR 11 3
TF GabR - Enterobacteriales Gamma-aminobutyrate utilization Gamma-aminobutyric acid GntR/MocR 12 5
TF GabR - Moraxellaceae Gamma-aminobutyrate utilization Gamma-aminobutyric acid GntR/MocR 4 3
TF GabR - Psychromonadaceae/Aeromonadales Gamma-aminobutyrate utilization Gamma-aminobutyric acid GntR/MocR 6 1
TF GabR - Ralstonia Gamma-aminobutyrate utilization Gamma-aminobutyric acid GntR/MocR 6 8
TF GabR - Various betaproteobacteria Gamma-aminobutyrate utilization Gamma-aminobutyric acid GntR/MocR 12 1
TF GabR2 - Comamonadaceae Gamma-aminobutyrate utilization Gamma-aminobutyric acid GntR/MocR 11 4
TF GabR2 - Pseudomonadaceae Gamma-aminobutyrate utilization Gamma-aminobutyric acid GntR/MocR 8 2
TF GabR - Bacillales Gamma-aminobutyrate utilization Gamma-aminobutyric acid, Pyridoxal-5-phosphate GntR/MocR 11 4
TF GabR - Staphylococcaceae Gamma-aminobutyrate utilization Gamma-aminobutyric acid, Pyridoxal-5-phosphate GntR/MocR 7 1
TF FatR - Bacillales Toxic fatty acid stress response Gamma-linolenic acid, Linoleate, Oleate, Phytanate TetR 11 5
TF FatR - Lactobacillaceae Toxic fatty acid stress response Gamma-linolenic acid, Linoleate, Oleate, Phytanate TetR 15 5
TF GlnL - Bacillales Aspartate utilization, Glutamine utilization GlnK, sensor histidine kinase (glutamine) GlnL 11 12
TF AmtR - Corynebacteriaceae Nitrogen metabolism GlnK-AMP, signal transduction protein TetR 8 42
TF AmtR - Micrococcineae Nitrogen metabolism GlnK-AMP, signal transduction protein TetR 14 5
TF AmtR - Mycobacteriaceae Nitrogen metabolism GlnK-AMP, signal transduction protein TetR 9 6
TF AmtR - Nocardiaceae Nitrogen metabolism GlnK-AMP, signal transduction protein TetR 4 7
TF AmtR - Streptomycetaceae Nitrogen metabolism GlnK-AMP, signal transduction protein TetR 4 6
TF GntR - Alteromonadales Gluconate utilization Gluconate LacI 9 5
TF GntR - Bifidobacteriaceae Gluconate utilization Gluconate LacI 10 2
TF GntR - Burkholderia Gluconate utilization Gluconate LacI 8 4
TF GntR - Comamonadaceae Gluconate utilization Gluconate LacI 11 28
TF GntR - Corynebacteriaceae Gluconate utilization Gluconate GntR/Others 8 13
TF GntR - Enterobacteriales   Gluconate utilization Gluconate LacI 12 61
TF GntR - Oceanospirillales/Alteromonadales Gluconate utilization Gluconate LacI 12 8
TF GntR - Pasteurellales Gluconate utilization Gluconate LacI 9 28
TF GntR - Pseudomonadaceae Gluconate utilization Gluconate LacI 8 32
TF GntR - Psychromonadaceae/Aeromonadales Gluconate utilization Gluconate LacI 6 22
TF GntR - Rhizobiales Gluconate utilization Gluconate LacI 15 4
TF GntR - Rhodospirillales Gluconate utilization Gluconate LacI 9 4
TF GntR - Shewanellaceae Gluconate utilization Gluconate LacI 16 4
TF GntR - Staphylococcaceae Gluconate utilization Gluconate GntR/Others 7 7
TF GntR - Various betaproteobacteria Gluconate utilization Gluconate LacI 12 1
TF GntR - Vibrionales Gluconate utilization Gluconate LacI 10 33
TF GntR1 - Lactobacillaceae Gluconate utilization Gluconate RpiR 15 32
TF GntR1 - Streptococcaceae Gluconate utilization Gluconate RpiR 15 6
TF GntR2 - Lactobacillaceae Gluconate utilization Gluconate LacI 15 2
TF DasR - Frankineae/Propionibacterineae/Pseudonocardiaceae N-acetylglucosamine utilization Glucosamine-6-phosphate GntR/Others 9 57
TF DasR - Micrococcineae N-acetylglucosamine utilization Glucosamine-6-phosphate GntR/Others 14 22
TF DasR - Nocardiaceae N-acetylglucosamine utilization Glucosamine-6-phosphate GntR/Others 4 6
TF DasR - Streptomycetaceae N-acetylglucosamine utilization Glucosamine-6-phosphate GntR/Others 4 179
TF GamR - Bacillales Glucosamine utilization Glucosamine-6-phosphate GntR/Others 11 25
TF GlmR - Shewanellaceae Lipopolysaccharide biosynthesis Glucosamine-6-phosphate DeoR 16 16
TF SiaR - Enterobacteriales Sialic acid utilization Glucosamine-6-phosphate RpiR 12 14
TF SiaR - Pasteurellales Sialic acid utilization Glucosamine-6-phosphate RpiR 9 23
TF SiaR - Psychromonadaceae/Aeromonadales Sialic acid utilization Glucosamine-6-phosphate RpiR 6 9
TF SiaR - Vibrionales Sialic acid utilization Glucosamine-6-phosphate RpiR 10 17
RNA glmS - Bacillales Amino sugar metabolism Glucosamine-6-phosphate RF00234 11 11
RNA glmS - Chloroflexia Amino sugar metabolism Glucosamine-6-phosphate RF00234 5 5
RNA glmS - Clostridiaceae Amino sugar metabolism Glucosamine-6-phosphate RF00234 20 17
RNA glmS - Deinococcus-Thermus Amino sugar metabolism Glucosamine-6-phosphate RF00234 5 3
RNA glmS - Lactobacillaceae Amino sugar metabolism Glucosamine-6-phosphate RF00234 15 1
RNA glmS - Staphylococcaceae Amino sugar metabolism Glucosamine-6-phosphate RF00234 7 7
TF GluR - Caulobacterales Carbohydrate metabolism Glucose LacI 4 17
TF GluR - Thermotogales Glucose utilization, Trehalose utilization Glucose ROK 11 7
TF XylR - Thermotogales Xylose utilization Glucose, Xylose ROK 11 39
TF UxuR - Bacteroidaceae Glucuronate utilization Glucuronate LacI 11 3
TF UxuR - Enterobacteriales Glucuronate utilization Glucuronate GntR/Others 12 44
TF UxuR - Oceanospirillales/Alteromonadales Glucuronate utilization Glucuronate GntR/Others 12 5
TF UxuR - Pasteurellales Glucuronate utilization Glucuronate GntR/Others 9 19
TF UxuR - Psychromonadaceae/Aeromonadales Glucuronate utilization Glucuronate GntR/Others 6 17
TF UxuR - Rhodobacterales Glucuronate utilization Glucuronate GntR/Others 15 5
TF UxuR - Streptococcaceae Glucuronate utilization Glucuronate GntR/Others 15 4
TF UxuR - Vibrionales Glucuronate utilization Glucuronate GntR/Others 10 28
RNA T-box(Gly) - Bacillales Amino acid metabolism Gly-tRNA RF00230 11 9
RNA T-box(Gly) - Chloroflexia Amino acid metabolism Gly-tRNA RF00230 5 5
RNA T-box(Gly) - Clostridiaceae Amino acid metabolism Gly-tRNA RF00230 20 10
RNA T-box(Gly) - Deinococcus-Thermus Amino acid metabolism Gly-tRNA RF00230 5 3
RNA T-box(Gly) - Lactobacillaceae Amino acid metabolism Gly-tRNA RF00230 15 15
RNA T-box(Gly) - Staphylococcaceae Amino acid metabolism Gly-tRNA RF00230 7 7
RNA T-box(Gly) - Streptococcaceae Amino acid metabolism Gly-tRNA RF00230 15 15
TF SdaR - Enterobacteriales Galactarate utilization, Glucarate utilization Glycerate SdaR 12 31
TF SdaR - Shewanellaceae Glycerate utilization Glycerate SdaR 16 14
TF GlpR - Desulfovibrionales Glycerol utilization Glycerol 3-phosphate DeoR 10 7
TF GlpR - Enterobacteriales Glycerol utilization Glycerol 3-phosphate DeoR 12 64
TF GcvA - Enterobacteriales Glycine metabolism Glycine LysR 12 34
TF GcvA - Shewanellaceae Glycine metabolism Glycine LysR 16 108
TF GcvR - Pseudomonadales Glycine metabolism Glycine TyrR 8 20
RNA Glycine - Bacillales Glycine metabolism Glycine RF00504 11 22
RNA Glycine - Burkholderia Glycine metabolism Glycine RF00504 8 20
RNA Glycine - Caulobacterales Glycine metabolism Glycine RF00504 4 11
RNA Glycine - Chloroflexia Glycine metabolism Glycine RF00504 5 6
RNA Glycine - Clostridiaceae Glycine metabolism Glycine RF00504 20 52
RNA Glycine - Corynebacteriaceae Glycine metabolism Glycine RF00504 8 4
RNA Glycine - Desulfovibrionales Glycine metabolism Glycine RF00504 10 6
RNA Glycine - Enterobacteriales Glycine metabolism Glycine RF00504 12 2
RNA Glycine - Mycobacteriaceae Glycine metabolism Glycine RF00504 9 19
RNA Glycine - Pasteurellales Glycine metabolism Glycine RF00504 9 18
RNA Glycine - Pseudomonadaceae Glycine metabolism Glycine RF00504 8 2
RNA Glycine - Ralstonia Glycine metabolism Glycine RF00504 6 22
RNA Glycine - Rhizobiales Glycine metabolism Glycine RF00504 15 36
RNA Glycine - Rhodobacterales Glycine metabolism Glycine RF00504 15 31
RNA Glycine - Shewanellaceae Glycine metabolism Glycine RF00504 16 27
RNA Glycine - Staphylococcaceae Glycine metabolism Glycine RF00504 7 8
RNA Glycine - Streptococcaceae Glycine metabolism Glycine RF00504 15 18
RNA Glycine - Vibrionales Glycine metabolism Glycine RF00504 10 20
TF GlcC - Alcaligenaceae Glycolate utilization Glycolate GntR/Others 3 9
TF GlcC - Burkholderia Glycolate utilization Glycolate GntR/Others 8 21
TF GlcC - Enterobacteriales Glycolate utilization Glycolate GntR/Others 12 4
TF GlcC - Oceanospirillales/Alteromonadales Glycolate utilization Glycolate GntR/Others 12 10
TF GlcC - Pseudomonadaceae Glycolate utilization Glycolate GntR/Others 8 24
TF GlcC - Rhizobiales Glycolate utilization Glycolate GntR/Others 15 21
TF GlcC - Rhodobacterales Glycolate utilization Glycolate GntR/Others 15 1
TF GlcC - Various betaproteobacteria Glycolate utilization Glycolate GntR/Others 12 2
TF IclR - Enterobacteriales Glyoxylate bypass Glyoxylate, Pyruvate IclR 12 10
TF PurR - Enterobacteriales Purine metabolism Guanine, Hypoxanthine LacI 12 313
TF PurR - Pasteurellales Purine metabolism Guanine, Hypoxanthine LacI 9 77
TF PurR - Vibrionales Purine metabolism Guanine, Hypoxanthine LacI 10 149
TF LeuO - Enterobacteriales Guanosine 3',5'-bis(diphosphate) LysR 12 21
TF GutR - Lactobacillaceae Sorbitol utilization GutB, sorbitol-specific PTS EIIB component, HPr, phosphocarrier protein BglG 15 5
TF GutR - Streptococcaceae Sorbitol utilization GutB, sorbitol-specific PTS EIIB component, HPr, phosphocarrier protein BglG 15 3
TF CcpA - Bacillales Carbon catabolism HPr, phosphocarrier protein LacI 11 559
TF CcpA - Clostridia-1 Carbohydrate metabolism HPr, phosphocarrier protein LacI 8 436
TF CcpA - Clostridia-2 Carbohydrate metabolism, Carbon catabolism HPr, phosphocarrier protein LacI 3 113
TF LicR - Bacillales Beta-glucosides utilization HPr, phosphocarrier protein, LicB, lichenan-specific enzyme IIB PTS component BglG 11 5
TF ManR - Bacillales Mannose utilization HPr, phosphocarrier protein, ManP, mannose-specific enzyme IIBCA PTS component BglG 11 5
TF ManR - Staphylococcaceae Mannose utilization HPr, phosphocarrier protein, ManP, mannose-specific enzyme IIBCA PTS component BglG 7 4
TF MtlR - Bacillales Mannitol utilization HPr, phosphocarrier protein, MtlA, mannitol-specific enzyme IICB PTS component BglG 11 14
TF MtlR - Lactobacillaceae Mannitol utilization HPr, phosphocarrier protein, MtlA, mannitol-specific enzyme IICB PTS component BglG 15 4
TF MtlR - Staphylococcaceae Mannitol utilization HPr, phosphocarrier protein, MtlA, mannitol-specific enzyme IICB PTS component BglG 7 5
TF MtlR - Streptococcaceae Mannitol utilization HPr, phosphocarrier protein, MtlA, mannitol-specific enzyme IICB PTS component BglG 15 6
TF SgaR - Streptococcaceae Ascorbate utilization HPr, phosphocarrier protein, SgaB, ascorbate-specific PTS system EIIB component BglG 15 19
TF SgaR2 - Streptococcaceae Ascorbate utilization HPr, phosphocarrier protein, SgaB2, ascorbate-specific PTS system, EIIB component BglG 15 8
TF CtsR - Bacillales Heat shock response Heat shock CtsR 11 41
TF CtsR - Lactobacillaceae Heat shock response Heat shock CtsR 15 44
TF CtsR - Staphylococcaceae Heat shock response Heat shock CtsR 7 45
TF CtsR - Streptococcaceae Heat shock response Heat shock CtsR 15 68
TF HrcA - Alcaligenaceae Heat shock response Heat shock HrcA 3 6
TF HrcA - Alteromonadales Heat shock response Heat shock HrcA 9 2
TF HrcA - Bacillales Heat shock response Heat shock HrcA 11 26
TF HrcA - Bifidobacteriaceae Heat shock response Heat shock HrcA 10 39
TF HrcA - Burkholderia Heat shock response Heat shock HrcA 8 16
TF HrcA - Caulobacterales Heat shock response Heat shock HrcA 4 4
TF HrcA - Chlamydiales Heat shock response Heat shock HrcA 7 14
TF HrcA - Chlorobiales Heat shock response Heat shock HrcA 11 11
TF HrcA - Chloroflexia Heat shock response Heat shock HrcA 5 16
TF HrcA - Clostridia-1 Heat shock response Heat shock HrcA 8 20
TF HrcA - Clostridia-2 Heat shock response Heat shock HrcA 3 8
TF HrcA - Clostridia-3 Heat shock response Heat shock HrcA 14 81
TF HrcA - Comamonadaceae Heat shock response Heat shock HrcA 11 22
TF HrcA - Corynebacteriaceae Heat shock response Heat shock HrcA 8 25
TF HrcA - Cyanobacteria Heat shock response Heat shock HrcA 14 29
TF HrcA - Deinococcus-Thermus Heat shock response Heat shock HrcA 5 4
TF HrcA - Desulfovibrionales Heat shock response Heat shock HrcA 10 7
TF HrcA - Desulfuromonadales Heat shock response Heat shock HrcA 9 29
TF HrcA - Frankineae/Propionibacterineae/Pseudonocardiaceae Heat shock response Heat shock HrcA 9 47
TF HrcA - Lactobacillaceae Heat shock response Heat shock HrcA 15 69
TF HrcA - Listeriaceae Heat shock response Heat shock HrcA 4 8
TF HrcA - Micrococcineae Heat shock response Heat shock HrcA 14 66
TF HrcA - Mycobacteriaceae Heat shock response Heat shock HrcA 9 40
TF HrcA - Nocardiaceae Heat shock response Heat shock HrcA 4 19
TF HrcA - Oceanospirillales/Alteromonadales Heat shock response Heat shock HrcA 12 2
TF HrcA - Ralstonia Heat shock response Heat shock HrcA 6 12
TF HrcA - Rhizobiales Heat shock response Heat shock HrcA 15 38
TF HrcA - Rhodobacterales Heat shock response Heat shock HrcA 15 15
TF HrcA - Rhodospirillales Heat shock response Heat shock HrcA 9 9
TF HrcA - Sphingomonadales Heat shock response Heat shock HrcA 7 7
TF HrcA - Staphylococcaceae Heat shock response Heat shock HrcA 7 14
TF HrcA - Streptococcaceae Heat shock response Heat shock HrcA 15 49
TF HrcA - Streptomycetaceae Heat shock response Heat shock HrcA 4 24
TF HrcA - Thermoanaerobacterales Heat shock response Heat shock HrcA 7 15
TF HrcA - Thermotogales Heat shock response Heat shock HrcA 11 50
TF HrcA - Various betaproteobacteria Heat shock response Heat shock HrcA 12 22
TF HrcA - Xanthomonadales Heat shock response Heat shock HrcA 4 4
TF HspR - Corynebacteriaceae Heat shock response Heat shock MerR 8 24
TF HspR - Mycobacteriaceae Heat shock response Heat shock MerR 9 38
TF RpoH - Desulfovibrionales Heat shock response Heat shock Sigma70 10 20
TF Irr - Rhizobiales Iron homeostasis Heme FUR 15 122
TF Irr - Rhodobacterales Iron homeostasis Heme FUR 15 37
TF Irr - Rhodospirillales Iron homeostasis Heme FUR 9 13
TF HTCS_Hep - Bacteroidaceae Heparin utilization Heparin [Other] 11 10
RNA T-box(His) - Clostridiaceae Amino acid metabolism His-tRNA RF00230 20 3
RNA T-box(His) - Lactobacillaceae Amino acid metabolism His-tRNA RF00230 15 4
RNA T-box(His) - Streptococcaceae Amino acid metabolism His-tRNA RF00230 15 7
TF HisR - Bacillales Histidine biosynthesis Histidine TrpR 11 20
TF HisR - Clostridia-3 Histidine biosynthesis Histidine TrpR 14 37
TF HisR - Listeriaceae Histidine biosynthesis Histidine TrpR 4 8
TF HisR - Staphylococcaceae Histidine biosynthesis Histidine TrpR 7 24
TF HisR - Thermoanaerobacterales Histidine biosynthesis Histidine TrpR 7 8
TF HisR - Xanthomonadales Histidine biosynthesis Histidine TrpR 4 8
TF HutR - Staphylococcaceae Histidine utilization Histidine LysR 7 12
TF MetR - Alcaligenaceae Methionine biosynthesis Homocysteine LysR 3 13
TF MetR - Alteromonadales Methionine biosynthesis Homocysteine LysR 9 15
TF MetR - Burkholderia Methionine biosynthesis Homocysteine LysR 8 18
TF MetR - Comamonadaceae Methionine biosynthesis Homocysteine LysR 11 13
TF MetR - Enterobacteriales Methionine biosynthesis Homocysteine LysR 12 140
TF MetR - Oceanospirillales/Alteromonadales Methionine biosynthesis Homocysteine LysR 12 46
TF MetR - Pasteurellales Methionine biosynthesis Homocysteine LysR 9 40
TF MetR - Pseudomonadaceae Methionine biosynthesis Homocysteine LysR 8 44
TF MetR - Psychromonadaceae/Aeromonadales Methionine biosynthesis Homocysteine LysR 6 13
TF MetR - Ralstonia Methionine biosynthesis Homocysteine LysR 6 12
TF MetR - Rhodobacterales Methionine biosynthesis Homocysteine LysR 15 30
TF MetR - Shewanellaceae Methionine biosynthesis Homocysteine LysR 16 117
TF MetR - Various betaproteobacteria Methionine biosynthesis Homocysteine LysR 12 19
TF MetR - Vibrionales Methionine biosynthesis Homocysteine LysR 10 57
TF MetR - Xanthomonadales Methionine biosynthesis Homocysteine LysR 4 6
TF MtaR - Lactobacillaceae Methionine biosynthesis Homocysteine LysR 15 2
TF MtaR - Streptococcaceae Methionine metabolism Homocysteine LysR 15 72
TF HmgR - Pseudomonadaceae Tyrosine degradation Homogentisate IclR 8 12
TF HssR - Staphylococcaceae Heme efflux HssS, sensor histidine kinase (heme) OmpR 7 7
TF RegR - Streptococcaceae Hyaluronate utilization Hyaluronate oligosaccharide phosphate LacI 15 27
TF PerR - Bacteroidaceae Oxidative stress response, Peroxide stress response Hydrogen peroxide FUR 11 51
TF PerR - Bacillales Oxidative stress response, Peroxide stress response Hydrogen peroxide, Iron ion, (Fe2+), Manganese ion, (Mn2+) FUR 11 129
TF PerR - Lactobacillaceae Iron homeostasis, Manganese homeostasis, Oxidative stress response Hydrogen peroxide, Iron ion, (Fe2+), Manganese ion, (Mn2+) FUR 15 49
TF PerR - Staphylococcaceae Oxidative stress response Hydrogen peroxide, Iron ion, (Fe2+), Manganese ion, (Mn2+) FUR 7 69
TF PerR - Streptococcaceae Iron homeostasis, Manganese homeostasis, Oxidative stress response Hydrogen peroxide, Iron ion, (Fe2+), Manganese ion, (Mn2+) FUR 15 75
TF RosR - Corynebacteriaceae Peroxide stress response Hydrogen peroxide, Iron ion, (Fe2+), Manganese ion, (Mn2+) MarR 8 43
RNA T-box(Ile) - Bacillales Amino acid metabolism Ile-tRNA RF00230 11 16
RNA T-box(Ile) - Chloroflexia Amino acid metabolism Ile-tRNA RF00230 5 5
RNA T-box(Ile) - Clostridiaceae Amino acid metabolism Ile-tRNA RF00230 20 29
RNA T-box(Ile) - Corynebacteriaceae Amino acid metabolism Ile-tRNA RF00230 8 8
RNA T-box(Ile) - Deinococcus-Thermus Amino acid metabolism Ile-tRNA RF00230 5 5
RNA T-box(Ile) - Lactobacillaceae Amino acid metabolism Ile-tRNA RF00230 15 28
RNA T-box(Ile) - Mycobacteriaceae Amino acid metabolism Ile-tRNA RF00230 9 7
RNA T-box(Ile) - Staphylococcaceae Amino acid metabolism Ile-tRNA RF00230 7 7
RNA T-box(Ile) - Streptococcaceae Amino acid metabolism Ile-tRNA RF00230 15 15
TF PhoB - Desulfovibrionales Phosphate metabolism Inorganic phosphate OmpR 10 95
TF PhoB - Thermotogales Phosphate metabolism Inorganic phosphate OmpR 11 11
TF SphR - Cyanobacteria Phosphate metabolism Inorganic phosphate OmpR 14 77
TF DtxR - Corynebacteriaceae Iron homeostasis Iron ion, (Fe2+) DtxR 8 139
TF FetR - Chloroflexia Iron homeostasis Iron ion, (Fe2+) DtxR 5 13
TF Fur - Alteromonadales Iron homeostasis Iron ion, (Fe2+) FUR 9 142
TF Fur - Bacillales Iron homeostasis Iron ion, (Fe2+) FUR 11 200
TF Fur - Bacteroidaceae Iron homeostasis Iron ion, (Fe2+) FUR 11 11
TF Fur - Caulobacterales Iron homeostasis Iron ion, (Fe2+) FUR 4 38
TF Fur - Clostridia-2 Iron homeostasis Iron ion, (Fe2+) FUR 3 24
TF Fur - Clostridia-3 Iron homeostasis Iron ion, (Fe2+) FUR 14 49
TF Fur - Cyanobacteria Iron homeostasis Iron ion, (Fe2+) FUR 14 167
TF Fur - Desulfovibrionales Iron homeostasis Iron ion, (Fe2+) FUR 10 193
TF Fur - Desulfuromonadales Iron homeostasis Iron ion, (Fe2+) FUR 9 41
TF Fur - Enterobacteriales Iron homeostasis Iron ion, (Fe2+) FUR 12 656
TF Fur - Enterococcaceae Iron homeostasis Iron ion, (Fe2+) FUR 2 14
TF Fur - Listeriaceae Iron homeostasis Iron ion, (Fe2+) FUR 4 91
TF Fur - Pasteurellales Iron homeostasis Iron ion, (Fe2+) FUR 9 151
TF Fur - Psychromonadaceae/Aeromonadales Iron homeostasis Iron ion, (Fe2+) FUR 6 111
TF Fur - Ralstonia Iron homeostasis Iron ion, (Fe2+) FUR 6 94
TF Fur - Rhodobacterales Iron homeostasis Iron ion, (Fe2+) FUR 15 27
TF Fur - Rhodospirillales Iron homeostasis Iron ion, (Fe2+) FUR 9 103
TF Fur - Shewanellaceae Iron homeostasis Iron ion, (Fe2+) FUR 16 505
TF Fur - Sphingomonadales Iron homeostasis Iron ion, (Fe2+) FUR 7 74
TF Fur - Staphylococcaceae Iron homeostasis Iron ion, (Fe2+) FUR 7 106
TF Fur - Thermoanaerobacterales Iron homeostasis Iron ion, (Fe2+) FUR 7 29
TF Fur - Thermotogales Iron homeostasis Iron ion, (Fe2+) FUR 11 26
TF Fur - Vibrionales Iron homeostasis Iron ion, (Fe2+) FUR 10 447
TF Fur - Xanthomonadales Iron homeostasis Iron ion, (Fe2+) FUR 4 49
TF IdeR - Clostridia-3 Iron homeostasis Iron ion, (Fe2+) DtxR 14 78
TF Mur - Rhizobiales Manganese homeostasis Iron ion, (Fe2+) FUR 15 28
TF RirA - Rhizobiales Iron homeostasis Iron ion, (Fe2+) Rrf2 15 129
TF IscR - Rhodobacterales Iron homeostasis, Iron-sulfur cluster biogenesis Iron ion, (Fe2+), Iron-sulfur cluster redox state Rrf2 15 125
TF IscR - Alteromonadales Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 9 43
TF IscR - Burkholderia Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 8 16
TF IscR - Caulobacterales Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 4 4
TF IscR - Clostridia-1 Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 8 19
TF IscR - Clostridia-2 Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 3 7
TF IscR - Clostridia-3 Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 14 9
TF IscR - Comamonadaceae Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 11 16
TF IscR - Desulfuromonadales Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 9 8
TF IscR - Enterobacteriales Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 12 45
TF IscR - Moraxellaceae Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 4 4
TF IscR - Oceanospirillales/Alteromonadales Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 12 41
TF IscR - Pasteurellales Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 9 22
TF IscR - Pseudomonadaceae Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 8 15
TF IscR - Psychromonadaceae/Aeromonadales Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 6 14
TF IscR - Ralstonia Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 6 12
TF IscR - Rhodospirillales Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 9 5
TF IscR - Shewanellaceae Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 16 93
TF IscR - Sphingomonadales Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 7 7
TF IscR - Various betaproteobacteria Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 12 27
TF IscR - Vibrionales Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 10 39
TF IscR - Xanthomonadales Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 4 4
TF IscR2 - Rhodospirillales Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state Rrf2 9 7
TF SufR - Chloroflexia Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state [Other] 5 5
TF SufR - Corynebacteriaceae Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state ArsR 8 8
TF SufR - Cyanobacteria Iron-sulfur cluster biogenesis Iron-sulfur cluster redox state [Other] 14 48
TF KdpR - Desulfovibrionales Potassium homeostasis KdpS, sensor histidine kinase Fis 10 4
TF KojR - Bacillales Kojibiose utilization Kojibiose LacI 11 5
TF KojR - Chloroflexia Kojibiose utilization Kojibiose LacI 5 5
TF KojR - Thermoanaerobacterales Kojibiose utilization Kojibiose LacI 7 11
TF RocR - Bacillales Arginine degradation, Ornithine degradation L-citrulline, Ornithine Fis 11 26
TF FucR - Enterobacteriales Fucose utilization L-fuculose-1-phosphate DeoR 12 16
TF FucR - Lactobacillaceae Fucose utilization L-fuculose-1-phosphate DeoR 15 1
TF FucR - Streptococcaceae Fucose utilization L-fuculose-1-phosphate DeoR 15 2
TF LgoR - Bacteroidaceae L-galactose utilization L-galactose LacI 11 13
RNA glnA - Cyanobacteria Nitrogen assimilation L-glutamine RF01739 14 13
TF IdnR - Rhizobiales Idonate utilization L-idonate LacI 15 32
TF LldR - Burkholderia Lactate utilization L-lactate GntR/Others 8 16
TF LldR - Comamonadaceae Lactate utilization L-lactate GntR/Others 11 6
TF LldR - Corynebacteriaceae Lactate utilization L-lactate GntR/Others 8 12
TF LldR - Desulfovibrionales Lactate utilization L-lactate GntR/Others 10 11
TF LldR - Desulfuromonadales Lactate utilization L-lactate GntR/Others 9 20
TF LldR - Enterobacteriales Lactate utilization L-lactate GntR/Others 12 10
TF LldR - Frankineae/Propionibacterineae/Pseudonocardiaceae Lactate utilization L-lactate GntR/Others 9 12
TF LldR - Micrococcineae Lactate utilization L-lactate GntR/Others 14 25
TF LldR - Moraxellaceae Lactate utilization L-lactate GntR/Others 4 5
TF LldR - Mycobacteriaceae Lactate utilization L-lactate GntR/Others 9 8
TF LldR - Nocardiaceae Lactate utilization L-lactate GntR/Others 4 10
TF LldR - Oceanospirillales/Alteromonadales Lactate utilization L-lactate GntR/Others 12 18
TF LldR - Pseudomonadaceae Lactate utilization L-lactate GntR/Others 8 20
TF LldR - Ralstonia Lactate utilization L-lactate GntR/Others 6 8
TF LldR - Rhizobiales Lactate utilization L-lactate GntR/Others 15 2
TF LldR - Rhodobacterales Lactate utilization L-lactate GntR/Others 15 4
TF LldR - Rhodospirillales Lactate utilization L-lactate GntR/Others 9 11
TF LldR - Shewanellaceae Lactate utilization L-lactate LysR 16 14
TF LldR - Streptomycetaceae Lactate utilization L-lactate GntR/Others 4 5
TF LldR - Various betaproteobacteria Lactate utilization L-lactate GntR/Others 12 15
TF LldR - Xanthomonadales Lactate utilization L-lactate GntR/Others 4 2
TF LutR - Bacillales Lactate utilization L-lactate GntR/Others 11 18
TF MleR - Lactobacillaceae Malate utilization L-malate LysR 15 21
TF MleR - Streptococcaceae Malate utilization L-malate LysR 15 8
TF TalR - Comamonadaceae L-talarate utilization L-talarate LacI 11 7
TF TalR - Enterobacteriales L-talarate utilization L-talarate LacI 12 7
TF TalR - Ralstonia L-talarate utilization L-talarate LacI 6 4
TF SgaR - Bifidobacteriaceae L-xylulose utilization L-xylulose SorC 10 2
TF LysR - Enterobacteriales Lysine biosynthesis LL-2,6-Diaminopimelate LysR 12 24
TF DVU3023 - Desulfovibrionales Lactate utilization Lactate Fis 10 26
TF LacR - Bifidobacteriaceae Lactose utilization Lactose LacI 10 27
TF LacR - Lactobacillaceae Lactose utilization Lactose LacI 15 11
RNA T-box(Leu) - Bacillales Amino acid metabolism Leu-tRNA RF00230 11 29
RNA T-box(Leu) - Clostridiaceae Amino acid metabolism Leu-tRNA RF00230 20 30
RNA T-box(Leu) - Lactobacillaceae Amino acid metabolism Leu-tRNA RF00230 15 16
RNA T-box(Leu) - Staphylococcaceae Amino acid metabolism Leu-tRNA RF00230 7 7
TF LiaR - Bacillales Cell wall-active antibiotics stress response LiaS, sensor histidine kinase (bacitracin, nisin, ramoplanin, vancomycin) OmpR 11 11
TF FabT - Lactobacillaceae Fatty acid biosynthesis Long-chain acyl-ACP MarR 15 12
TF FabT - Streptococcaceae Fatty acid biosynthesis Long-chain acyl-ACP MarR 15 56
RNA T-box(Lys) - Bacillales Amino acid metabolism Lys-tRNA RF00230 11 7
RNA T-box(Lys) - Clostridiaceae Amino acid metabolism Lys-tRNA RF00230 20 1
RNA T-box(Lys) - Lactobacillaceae Amino acid metabolism Lys-tRNA RF00230 15 1
RNA Lysine - Bacillales Lysine biosynthesis Lysine RF00168 11 23
RNA Lysine - Clostridiaceae Lysine biosynthesis Lysine RF00168 20 38
RNA Lysine - Enterobacteriales Lysine biosynthesis Lysine RF00168 12 5
RNA Lysine - Lactobacillaceae Lysine biosynthesis Lysine RF00168 15 25
RNA Lysine - Pasteurellales Lysine biosynthesis Lysine RF00168 9 10
RNA Lysine - Shewanellaceae Lysine biosynthesis Lysine RF00168 16 35
RNA Lysine - Staphylococcaceae Lysine biosynthesis Lysine RF00168 7 15
RNA Lysine - Streptococcaceae Lysine biosynthesis Lysine RF00168 15 4
RNA Lysine - Thermotogales Lysine biosynthesis Lysine RF00168 11 9
RNA Lysine - Vibrionales Lysine biosynthesis Lysine RF00168 10 22
RNA Mg_sensor - Enterobacteriales Magnesium homeostasis Magnesium ion, (Mg2+) RF01056 12 5
RNA ykoK - Bacillales Magnesium homeostasis Magnesium ion, (Mg2+) RF00380 11 7
RNA ykoK - Clostridiaceae Magnesium homeostasis Magnesium ion, (Mg2+) RF00380 20 10
RNA ykoK - Corynebacteriaceae Magnesium homeostasis Magnesium ion, (Mg2+) RF00380 8 1
RNA ykoK - Enterobacteriales Magnesium homeostasis Magnesium ion, (Mg2+) RF00380 12 5
RNA ykoK - Lactobacillaceae Magnesium homeostasis Magnesium ion, (Mg2+) RF00380 15 10
RNA ykoK - Mycobacteriaceae Magnesium homeostasis Magnesium ion, (Mg2+) RF00380 9 9
RNA ykoK - Streptococcaceae Magnesium homeostasis Magnesium ion, (Mg2+) RF00380 15 5
RNA ykoK - Vibrionales Magnesium homeostasis Magnesium ion, (Mg2+) RF00380 10 1
TF MalR - Bacillales Malate utilization MalK, sensor histidine kinase (malate) CitB 11 11
TF FapR - Staphylococcaceae Fatty acid biosynthesis Malonyl-ACP, Malonyl-CoA FapR 7 30
TF FapR - Bacillales Fatty acid biosynthesis Malonyl-CoA FapR 11 48
TF MalR - Alteromonadales Maltodextrin utilization, Maltose utilization Maltose LacI 9 44
TF MalR - Bacteroidaceae Maltose utilization Maltose LacI 11 30
TF MalR - Lactobacillaceae Maltodextrin utilization, Maltose utilization Maltose LacI 15 11
TF MalR - Shewanellaceae Maltodextrin utilization Maltose LacI 16 67
TF MalR - Sphingomonadales Maltose utilization Maltose LacI 7 6
TF MalR - Staphylococcaceae Maltodextrin utilization, Maltose utilization Maltose LacI 7 5
TF MalR - Streptococcaceae Maltodextrin utilization, Maltose utilization Maltose LacI 15 80
TF MalR - Xanthomonadales Maltodextrin utilization, Maltose utilization Maltose LacI 4 14
TF MalR1 - Clostridia-1 Maltodextrin utilization, Maltose utilization Maltose LacI 8 4
TF MalR1/MalR2/MalR3 - Bifidobacteriaceae Maltodextrin utilization, Maltose utilization Maltose LacI 10 108
TF MalR2 - Bacillales Maltodextrin utilization, Maltose utilization Maltose LacI 11 24
TF MalR2 - Clostridia-1 Maltodextrin utilization, Maltose utilization Maltose LacI 8 10
TF MalR2 - Streptococcaceae Maltodextrin utilization, Maltose utilization Maltose LacI 15 4
TF MalR2 - Thermoanaerobacterales Maltodextrin utilization, Maltose utilization Maltose LacI 7 17
TF MalR3 - Lactobacillaceae Maltodextrin utilization, Maltose utilization Maltose LacI 15 17
TF MalR4 - Bifidobacteriaceae Maltodextrin utilization, Maltose utilization Maltose LacI 10 14
TF MalR5 - Bifidobacteriaceae Maltodextrin utilization, Maltose utilization Maltose LacI 10 12
TF MdxR - Bacillales Maltodextrin utilization, Maltose utilization Maltose LacI 11 4
TF MdxR - Lactobacillaceae Maltodextrin utilization, Maltose utilization Maltose LacI 15 11
TF MdxR - Listeriaceae Maltodextrin utilization, Maltose utilization Maltose LacI 4 8
TF MdxR - Streptococcaceae Maltodextrin utilization, Maltose utilization Maltose LacI 15 1
TF GlvR - Bacillales Maltose utilization Maltose-6-phosphate RpiR 11 3
TF GlvR - Staphylococcaceae Maltose utilization Maltose-6-phosphate RpiR 7 5
TF GlvR2 - Bacillales Maltose utilization Maltose-6-phosphate RpiR 11 5
TF MntR - Bacillales Manganese homeostasis Manganese ion, (Mn2+) DtxR 11 16
TF MntR - Chloroflexia Manganese homeostasis Manganese ion, (Mn2+) DtxR 5 9
TF MntR - Clostridia-1 Manganese homeostasis Manganese ion, (Mn2+) DtxR 8 5
TF MntR - Corynebacteriaceae Manganese homeostasis Manganese ion, (Mn2+) DtxR 8 16
TF MntR - Enterobacteriales Manganese homeostasis Manganese ion, (Mn2+) DtxR 12 35
TF MntR - Enterococcaceae Manganese homeostasis Manganese ion, (Mn2+) DtxR 2 6
TF MntR - Lactobacillaceae Manganese homeostasis Manganese ion, (Mn2+) DtxR 15 14
TF MntR - Listeriaceae Manganese homeostasis Manganese ion, (Mn2+) DtxR 4 8
TF MntR - Micrococcineae Manganese homeostasis Manganese ion, (Mn2+) DtxR 14 15
TF MntR - Mycobacteriaceae Manganese homeostasis Manganese ion, (Mn2+) DtxR 9 13
TF MntR - Nocardiaceae Manganese homeostasis Manganese ion, (Mn2+) DtxR 4 10
TF MntR - Rhizobiales Manganese homeostasis Manganese ion, (Mn2+) DtxR 15 12
TF MntR - Rhodobacterales Manganese homeostasis Manganese ion, (Mn2+) DtxR 15 5
TF MntR - Rhodospirillales Manganese homeostasis Manganese ion, (Mn2+) DtxR 9 12
TF MntR - Staphylococcaceae Manganese homeostasis Manganese ion, (Mn2+) DtxR 7 15
TF MntR - Streptococcaceae Manganese homeostasis Manganese ion, (Mn2+) DtxR 15 37
TF MntR - Xanthomonadales Manganese homeostasis Manganese ion, (Mn2+) DtxR 4 8
TF Mur - Rhodobacterales Manganese homeostasis Manganese ion, (Mn2+) FUR 15 28
TF PerR - Cyanobacteria Peroxide stress response Manganese ion, (Mn2+) FUR 14 20
TF MtlR - Shewanellaceae Mannitol utilization Mannitol SorC 16 1
TF SmoR - Rhizobiales Mannitol utilization, Sorbitol utilization Mannitol, Sorbitol LacI 15 8
TF ManR - Bacteroidaceae Mannose utilization, Mannosides utilization Mannose GntR/Others 11 9
TF ManR - Streptomycetaceae Mannose utilization, Mannosides utilization Mannose LacI 4 15
TF ManR - Thermotogales Mannan and beta-mannosides utilization Mannose ROK 11 9
TF ManR - Xanthomonadales Mannose utilization, Mannosides utilization Mannose LacI 4 13
TF ManR1 - Alteromonadales Mannose utilization, Mannosides utilization Mannose LacI 9 7
TF ManR1 - Shewanellaceae Mannose utilization, Mannosides utilization Mannose LacI 16 4
TF ManR2 - Alteromonadales Mannose utilization, Mannosides utilization Mannose LacI 9 5
TF ManR2 - Shewanellaceae Mannose utilization, Mannosides utilization Mannose LacI 16 5
TF ManR - Psychromonadaceae/Aeromonadales Mannose utilization Mannose-6-phosphate LacI 6 5
TF MerR - Alteromonadales Mercury resistance Mercury ion, (Hg2+) MerR 9 6
TF MerR - Burkholderia Mercury resistance Mercury ion, (Hg2+) MerR 8 3
TF MerR - Comamonadaceae Mercury resistance Mercury ion, (Hg2+) MerR 11 7
TF MerR - Oceanospirillales/Alteromonadales Mercury resistance Mercury ion, (Hg2+) MerR 12 5
TF MerR - Pseudomonadaceae Mercury resistance Mercury ion, (Hg2+) MerR 8 1
TF MerR - Psychromonadaceae/Aeromonadales Mercury resistance Mercury ion, (Hg2+) MerR 6 2
TF MerR - Ralstonia Mercury resistance Mercury ion, (Hg2+) MerR 6 11
TF MerR - Rhizobiales Mercury resistance Mercury ion, (Hg2+) MerR 15 2
TF MerR - Rhodobacterales Mercury resistance Mercury ion, (Hg2+) MerR 15 1
TF MerR - Shewanellaceae Mercury resistance Mercury ion, (Hg2+) MerR 16 5
TF MerR - Sphingomonadales Mercury resistance Mercury ion, (Hg2+) MerR 7 4
TF MerR - Various betaproteobacteria Mercury resistance Mercury ion, (Hg2+) MerR 12 2
TF MerR - Xanthomonadales Mercury resistance Mercury ion, (Hg2+) MerR 4 1
RNA T-box(Met) - Bacillales Amino acid metabolism Met-tRNA RF00230 11 6
RNA T-box(Met) - Clostridiaceae Amino acid metabolism Met-tRNA RF00230 20 19
RNA T-box(Met) - Lactobacillaceae Amino acid metabolism Met-tRNA RF00230 15 54
RNA T-box(Met) - Staphylococcaceae Amino acid metabolism Met-tRNA RF00230 7 9
RNA T-box(Met) - Streptococcaceae Amino acid metabolism Met-tRNA RF00230 15 2
TF MecI - Staphylococcaceae Penicillin and methicillin resistance Methicillin, Penicillin G MarR 7 4
TF ModE - Alcaligenaceae Molybdopterin biosynthesis Molybdate ModE 3 3
TF ModE - Burkholderia Molybdenum homeostasis Molybdate ModE 8 8
TF ModE - Caulobacterales Molybdenum homeostasis Molybdate ModE 4 5
TF ModE - Chlorobiales Molybdopterin biosynthesis Molybdate ModE 11 25
TF ModE - Comamonadaceae Molybdenum homeostasis Molybdate ModE 11 10
TF ModE - Desulfuromonadales Molybdenum homeostasis Molybdate ModE 9 10
TF ModE - Enterobacteriales Molybdenum homeostasis, Molybdopterin biosynthesis Molybdate ModE 12 55
TF ModE - Moraxellaceae Molybdenum homeostasis Molybdate ModE 4 1
TF ModE - Oceanospirillales/Alteromonadales Molybdenum homeostasis Molybdate ModE 12 2
TF ModE - Pasteurellales Molybdenum homeostasis Molybdate ModE 9 21
TF ModE - Pseudomonadaceae Molybdenum homeostasis Molybdate ModE 8 9
TF ModE - Psychromonadaceae/Aeromonadales Molybdenum homeostasis Molybdate ModE 6 3
TF ModE - Ralstonia Molybdenum homeostasis Molybdate ModE 6 8
TF ModE - Rhizobiales Molybdenum homeostasis Molybdate ModE 15 12
TF ModE - Rhizobiales Molybdopterin biosynthesis Molybdate ModE 15 2
TF ModE - Rhodobacterales Molybdopterin biosynthesis Molybdate ModE 15 3
TF ModE - Rhodospirillales Molybdopterin biosynthesis Molybdate ModE 9 7
TF ModE - Shewanellaceae Molybdenum homeostasis, Molybdopterin biosynthesis Molybdate ModE 16 10
TF ModE - Various betaproteobacteria Molybdenum homeostasis Molybdate ModE 12 3
TF ModE - Vibrionales Molybdenum homeostasis Molybdate ModE 10 2
TF ModE2 - Burkholderia Molybdopterin biosynthesis Molybdate ModE 8 10
TF ModE2 - Comamonadaceae Molybdopterin biosynthesis Molybdate ModE 11 8
TF ModE2 - Flavobacteria Molybdopterin biosynthesis Molybdate ModE 19 2
TF ModE2 - Rhodobacterales Molybdenum homeostasis Molybdate ModE 15 5
TF ModE2 - Rhodospirillales Molybdenum homeostasis Molybdate ModE 9 2
TF ModE2 - Sphingomonadales Molybdenum homeostasis Molybdate ModE 7 2
TF ModE2 - Various betaproteobacteria Molybdopterin biosynthesis Molybdate ModE 12 4
TF ModR - Chloroflexia Molybdenum homeostasis Molybdate PadR 5 4
TF TunR - Desulfovibrionales Molybdenum homeostasis, Tungsten homeostasis Molybdate, Tungsten TunR 10 37
RNA MOCO_RNA_motif - Alteromonadales Molybdenum homeostasis, Molybdopterin biosynthesis Molybdenum RF01055 9 3
RNA MOCO_RNA_motif - Caulobacterales Molybdenum homeostasis, Molybdopterin biosynthesis Molybdenum RF01055 4 1
RNA MOCO_RNA_motif - Chlorobiales Molybdenum homeostasis, Molybdopterin biosynthesis Molybdenum RF01055 11 1
RNA MOCO_RNA_motif - Clostridiaceae Molybdenum homeostasis, Molybdopterin biosynthesis Molybdenum RF01055 20 6
RNA MOCO_RNA_motif - Deinococcus-Thermus Molybdenum homeostasis, Molybdopterin biosynthesis Molybdenum RF01055 5 1
RNA MOCO_RNA_motif - Desulfuromonadales Molybdenum homeostasis, Molybdopterin biosynthesis, Tungsten homeostasis Molybdenum RF01055 9 23
RNA MOCO_RNA_motif - Enterobacteriales Molybdopterin biosynthesis Molybdenum RF01055 12 12
RNA MOCO_RNA_motif - Oceanospirillales/Alteromonadales Molybdenum homeostasis, Molybdopterin biosynthesis Molybdenum RF01055 12 2
RNA MOCO_RNA_motif - Pasteurellales Molybdenum homeostasis, Molybdopterin biosynthesis Molybdenum RF01055 9 12
RNA MOCO_RNA_motif - Psychromonadaceae/Aeromonadales Molybdopterin biosynthesis Molybdenum RF01055 6 5
RNA MOCO_RNA_motif - Rhodobacterales Molybdenum homeostasis, Molybdopterin biosynthesis Molybdenum RF01055 15 1
RNA MOCO_RNA_motif - Rhodospirillales Molybdopterin biosynthesis Molybdenum RF01055 9 1
RNA MOCO_RNA_motif - Shewanellaceae Molybdenum homeostasis, Molybdopterin biosynthesis Molybdenum RF01055 16 16
RNA MOCO_RNA_motif - Thermoanaerobacterales Molybdenum homeostasis, Molybdopterin biosynthesis Molybdenum RF01055 7 6
RNA MOCO_RNA_motif - Thermotogales Molybdenum homeostasis, Molybdopterin biosynthesis Molybdenum RF01055 11 2
RNA MOCO_RNA_motif - Vibrionales Molybdenum homeostasis, Molybdopterin biosynthesis Molybdenum RF01055 10 10
TF ModE2 - Desulfovibrionales Molybdenum homeostasis, Molybdopterin biosynthesis Molybdenum ModE 10 48
TF AgaR - Streptococcaceae N-acetylgalactosamine utilization N-acetylgalactosamine GntR/Others 15 16
TF AgaR2 - Lactobacillaceae N-acetylgalactosamine utilization N-acetylgalactosamine GntR/Others 15 6
TF AgaR2 - Streptococcaceae N-acetylgalactosamine utilization N-acetylgalactosamine GntR/Others 15 8
TF AgaR2 - Enterococcaceae N-acetylgalactosamine utilization N-acetylgalactosamine-6-phosphate GntR/Others 2 2
TF NagQ - Burkholderia N-acetylglucosamine utilization N-acetylglucosamine GntR/Others 8 7
TF NagQ - Caulobacterales N-acetylglucosamine utilization N-acetylglucosamine GntR/Others 4 13
TF NagQ - Oceanospirillales/Alteromonadales N-acetylglucosamine utilization N-acetylglucosamine GntR/Others 12 11
TF NagQ - Pseudomonadaceae N-acetylglucosamine utilization N-acetylglucosamine GntR/Others 8 4
TF NagQ - Ralstonia N-acetylglucosamine utilization N-acetylglucosamine GntR/Others 6 2
TF NagQ - Rhizobiales N-acetylglucosamine utilization N-acetylglucosamine GntR/Others 15 16
TF NagQ - Rhodobacterales N-acetylglucosamine utilization N-acetylglucosamine GntR/Others 15 8
TF NagQ - Rhodospirillales N-acetylglucosamine utilization N-acetylglucosamine GntR/Others 9 6
TF NagQ - Various betaproteobacteria N-acetylglucosamine utilization N-acetylglucosamine GntR/Others 12 12
TF NagQ - Xanthomonadales N-acetylglucosamine utilization N-acetylglucosamine GntR/Others 4 2
TF NagR - Alteromonadales N-acetylglucosamine utilization N-acetylglucosamine LacI 9 27
TF NagR - Chloroflexia N-acetylglucosamine utilization N-acetylglucosamine ROK 5 5
TF NagR - Oceanospirillales/Alteromonadales N-acetylglucosamine utilization N-acetylglucosamine LacI 12 19
TF NagR - Shewanellaceae N-acetylglucosamine utilization N-acetylglucosamine LacI 16 105
TF NagR - Xanthomonadales N-acetylglucosamine utilization N-acetylglucosamine LacI 4 17
TF NanR - Bacteroidaceae N-acetylglucosamine utilization, Sialic acid utilization N-acetylglucosamine, N-acetylneuraminic acid ROK 11 59
TF NagC - Enterobacteriales N-acetylglucosamine utilization N-acetylglucosamine-6-phosphate ROK 12 68
TF NagC - Oceanospirillales/Alteromonadales N-acetylglucosamine utilization N-acetylglucosamine-6-phosphate ROK 12 5
TF NagC - Pasteurellales N-acetylglucosamine utilization N-acetylglucosamine-6-phosphate ROK 9 16
TF NagC - Psychromonadaceae/Aeromonadales N-acetylglucosamine utilization N-acetylglucosamine-6-phosphate ROK 6 16
TF NagC - Vibrionales N-acetylglucosamine utilization N-acetylglucosamine-6-phosphate ROK 10 199
TF NagR - Bacillales N-acetylglucosamine utilization N-acetylglucosamine-6-phosphate GntR/Others 11 14
TF NagR - Bifidobacteriaceae Galacto-N-biose utilization, Lacto-N-biose utilization N-acetylglucosamine-6-phosphate ROK 10 28
TF NagR - Enterococcaceae N-acetylglucosamine utilization N-acetylglucosamine-6-phosphate GntR/Others 2 11
TF NagR - Lactobacillaceae N-acetylglucosamine utilization N-acetylglucosamine-6-phosphate GntR/Others 15 79
TF NagR - Listeriaceae N-acetylglucosamine utilization N-acetylglucosamine-6-phosphate GntR/Others 4 22
TF NagR - Streptococcaceae N-acetylglucosamine utilization N-acetylglucosamine-6-phosphate GntR/Others 15 66
TF NanR (SiaQ) - Enterobacteriales Sialic acid utilization N-acetylmannosamine-6-phosphate RpiR 12 2
TF NanR (SiaQ) - Vibrionales Sialic acid utilization N-acetylmannosamine-6-phosphate RpiR 10 6
TF NanR - Staphylococcaceae N-acetylglucosamine utilization, Sialic acid utilization N-acetylmannosamine-6-phosphate RpiR 7 18
TF MurR - Bacillales N-acetylmuramate utilization N-acetylmuramate-6-phosphate RpiR 11 3
TF MurR - Enterobacteriales N-acetylmuramate utilization N-acetylmuramate-6-phosphate RpiR 12 6
TF MurR - Lactobacillaceae N-acetylmuramate utilization N-acetylmuramate-6-phosphate RpiR 15 4
TF MurR - Staphylococcaceae N-acetylmuramate utilization N-acetylmuramate-6-phosphate RpiR 7 7
TF MurR - Streptococcaceae N-acetylmuramate utilization N-acetylmuramate-6-phosphate RpiR 15 4
TF NanR - Corynebacteriaceae Sialic acid utilization N-acetylneuraminic acid GntR/Others 8 18
TF NanR - Enterobacteriales Sialic acid utilization N-acetylneuraminic acid GntR/Others 12 7
TF NanR - Streptococcaceae Sialic acid utilization N-acetylneuraminic acid RpiR 15 16
TF NadR - Enterobacteriales NAD biosynthesis NAD NadR 12 27
TF Rex - Actinomycetales Energy metabolism NADH Rex 18 88
TF Rex - Bacillales Energy metabolism NADH Rex 11 64
TF Rex - Chloroflexia Energy metabolism NADH Rex 5 49
TF Rex - Clostridia-1 Energy metabolism NADH Rex 8 83
TF Rex - Clostridia-2 Energy metabolism NADH Rex 3 34
TF Rex - Clostridia-3 Energy metabolism NADH Rex 14 121
TF Rex - Deinococcus-Thermus Energy metabolism NADH Rex 5 10
TF Rex - Desulfovibrionales Energy metabolism NADH Rex 10 107
TF Rex - Frankineae/Propionibacterineae/Pseudonocardiaceae Energy metabolism NADH Rex 9 26
TF Rex - Lactobacillaceae Energy metabolism NADH Rex 15 68
TF Rex - Micrococcineae Energy metabolism NADH Rex 14 25
TF Rex - Nocardiaceae Energy metabolism NADH Rex 4 22
TF Rex - Staphylococcaceae Energy metabolism NADH Rex 7 74
TF Rex - Streptococcaceae Energy metabolism NADH Rex 15 161
TF Rex - Streptomycetaceae Energy metabolism NADH Rex 4 36
TF Rex - Thermoanaerobacterales Energy metabolism NADH Rex 3 42
TF Rex - Thermotogales Energy metabolism NADH Rex 11 114
TF Rex1 - Thermotogales Energy metabolism NADH Rex 11 10
TF DtxR - Clostridia-3 Metal homeostasis New effector DtxR 14 6
TF PdxR2(2) - Micrococcineae Pyridoxine/pyridoxal homeostasis New effector GntR/MocR 14 1
TF SCO2753 - Streptomycetaceae Sugar utilization New effector LacI 4 10
TF UriR - Corynebacteriaceae Pyrimidine utilization, Uridine utilization New effector LacI 8 3
TF NiaR - Bacillales NAD biosynthesis Niacin NiaR 11 26
TF NiaR - Clostridia-1 NAD biosynthesis Niacin NiaR 8 13
TF NiaR - Clostridia-2 NAD biosynthesis Niacin NiaR 3 9
TF NiaR - Clostridia-3 NAD biosynthesis Niacin NiaR 14 18
TF NiaR - Lactobacillaceae NAD biosynthesis Niacin NiaR 15 7
TF NiaR - Streptococcaceae NAD biosynthesis Niacin NiaR 15 23
TF NiaR - Thermotogales NAD biosynthesis Niacin NiaR 11 13
TF NikR - Burkholderia Nickel homeostasis Nickel ion, (Ni2+) NikR 8 2
TF NikR - Chlorobiales Nickel homeostasis Nickel ion, (Ni2+) NikR 11 5
TF NikR - Comamonadaceae Nickel homeostasis Nickel ion, (Ni2+) NikR 11 3
TF NikR - Desulfovibrionales Nickel homeostasis Nickel ion, (Ni2+) NikR 10 16
TF NikR - Desulfuromonadales Nickel homeostasis Nickel ion, (Ni2+) NikR 9 7
TF NikR - Enterobacteriales Nickel homeostasis Nickel ion, (Ni2+) NikR 12 9
TF NikR - Pseudomonadaceae Nickel homeostasis Nickel ion, (Ni2+) NikR 8 2
TF NikR - Rhizobiales Nickel homeostasis Nickel ion, (Ni2+) NikR 15 11
TF NikR - Rhodobacterales Nickel homeostasis Nickel ion, (Ni2+) NikR 15 2
TF NikR - Rhodospirillales Nickel homeostasis Nickel ion, (Ni2+) NikR 9 2
TF NikR - Shewanellaceae Nickel homeostasis Nickel ion, (Ni2+) NikR 16 8
TF NikR - Thermoanaerobacterales Nickel homeostasis Nickel ion, (Ni2+) NikR 7 3
TF NikR - Various betaproteobacteria Nickel homeostasis Nickel ion, (Ni2+) NikR 12 2
TF NimR - Pasteurellales Nickel homeostasis Nickel ion, (Ni2+) MerR 9 7
TF Nur - Streptomycetaceae Nickel homeostasis Nickel ion, (Ni2+) FUR 4 9
TF NigR - Lactobacillaceae Nigerose utilization Nigerose-6-phosphate LacI 15 5
TF NigR - Streptococcaceae Nigerose utilization Nigerose-6-phosphate LacI 15 2
TF NarP - Enterobacteriales Nitrate and nitrite respiration Nitrate, Nitrite LuxR 12 125
TF NarP - Pasteurellales Nitrate and nitrite respiration Nitrate, Nitrite LuxR 9 114
TF NarP - Psychromonadaceae/Aeromonadales Nitrate and nitrite respiration Nitrate, Nitrite LuxR 6 53
TF NarP - Shewanellaceae Nitrate and nitrite respiration Nitrate, Nitrite LuxR 16 249
TF NarP - Vibrionales Nitrate and nitrite respiration Nitrate, Nitrite LuxR 10 135
TF Dnr - Ralstonia Denitrification Nitric oxide CRP 6 9
TF Dnr - Shewanellaceae Denitrification Nitric oxide CRP 16 5
TF HcpR - Bacteroidaceae Nitrosative stress response Nitric oxide CRP 11 18
TF HcpR - Chloroflexia Nitrosative stress response Nitric oxide CRP 5 4
TF HcpR - Clostridia-1 Nitrosative stress response Nitric oxide CRP 8 32
TF HcpR - Clostridia-2 Nitrosative stress response Nitric oxide CRP 3 2
TF HcpR - Desulfovibrionales Nitrosative stress response Nitric oxide CRP 10 25
TF HcpR - Desulfuromonadales Nitrosative stress response Nitric oxide CRP 9 44
TF HcpR - Thermoanaerobacterales Nitrosative stress response Nitric oxide CRP 7 4
TF HcpR - Thermotogales Nitrosative stress response Nitric oxide CRP 11 20
TF NnrR - Caulobacterales Denitrification Nitric oxide CRP 4 11
TF NnrR - Rhizobiales Denitrification Nitric oxide CRP 15 110
TF NnrR - Rhodobacterales Denitrification Nitric oxide CRP 15 14
TF NnrR - Rhodospirillales Denitrification Nitric oxide CRP 9 5
TF NnrR - Sphingomonadales Denitrification Nitric oxide CRP 7 2
TF NorR - Alteromonadales Nitrosative stress response Nitric oxide Fis 9 18
TF NorR - Burkholderia Nitrosative stress response Nitric oxide Fis 8 5
TF NorR - Comamonadaceae Nitrosative stress response Nitric oxide Fis 11 25
TF NorR - Enterobacteriales Nitrosative stress response Nitric oxide Fis 12 33
TF NorR - Oceanospirillales/Alteromonadales Nitrosative stress response Nitric oxide Fis 12 13
TF NorR - Pseudomonadaceae Nitrosative stress response Nitric oxide Fis 8 40
TF NorR - Psychromonadaceae/Aeromonadales Nitrosative stress response Nitric oxide Fis 6 21
TF NorR - Ralstonia Nitrosative stress response Nitric oxide Fis 6 35
TF NorR - Shewanellaceae Nitrosative stress response Nitric oxide Fis 16 91
TF NorR - Vibrionales Nitrosative stress response Nitric oxide Fis 10 40
TF NorR2 - Vibrionales Nitrosative stress response Nitric oxide Fis 10 19
TF NsrR - Bacillales Nitrosative stress response Nitric oxide Rrf2 11 30
TF NsrR - Alteromonadales Nitrosative stress response Nitric oxide Rrf2 9 2
TF NsrR - Burkholderia Nitrosative stress response Nitric oxide Rrf2 8 23
TF NsrR - Caulobacterales Nitrosative stress response Nitric oxide Rrf2 4 3
TF NsrR - Comamonadaceae Nitrosative stress response Nitric oxide Rrf2 11 15
TF NsrR - Enterobacteriales Nitrosative stress response Nitric oxide Rrf2 12 73
TF NsrR - Moraxellaceae Nitrosative stress response Nitric oxide Rrf2 4 7
TF NsrR - Neisseriales Nitrosative stress response Nitric oxide Rrf2 12 5
TF NsrR - Oceanospirillales/Alteromonadales Nitrosative stress response Nitric oxide Rrf2 12 8
TF NsrR - Psychromonadaceae/Aeromonadales Nitrosative stress response Nitric oxide Rrf2 6 5
TF NsrR - Ralstonia Nitrosative stress response Nitric oxide Rrf2 6 23
TF NsrR - Rhizobiales Nitrosative stress response Nitric oxide Rrf2 15 2
TF NsrR - Rhodobacterales Nitrosative stress response Nitric oxide Rrf2 15 17
TF NsrR - Rhodospirillales Nitrosative stress response Nitric oxide Rrf2 9 13
TF NsrR - Shewanellaceae Nitrosative stress response Nitric oxide Rrf2 16 51
TF NsrR - Sphingomonadales Nitrosative stress response Nitric oxide Rrf2 7 5
TF NsrR - Vibrionales Nitrosative stress response Nitric oxide Rrf2 10 40
TF NsrR2 - Various betaproteobacteria Nitrosative stress response Nitric oxide Rrf2 12 16
TF DVU0621 - Desulfovibrionales Nitrate and nitrite respiration Nitrite Fis 10 17
TF NrfR - Bacteroidaceae Nitrate and nitrite respiration Nitrite CRP 11 6
TF NtcB - Cyanobacteria Nitrogen assimilation Nitrite LysR 14 44
TF NreC - Staphylococcaceae Nitrate and nitrite respiration NreB, sensor histidine kinase (Nitrate, Nitrite) OmpR 7 17
TF CmbR - Streptococcaceae Cysteine metabolism O-acetyl-L-serine LysR 15 104
TF HomR - Streptococcaceae Cysteine metabolism, Methionine metabolism O-acetyl-L-serine LysR 15 24
TF HTCS_Ogl-1 - Bacteroidaceae O-glycans utilization O-glycans [Other] 11 1
TF HTCS_Ogl-2 - Bacteroidaceae O-glycans utilization O-glycans [Other] 11 2
TF PsrA - Alteromonadales Fatty acid degradation Oleate TetR 9 26
TF PsrA - Burkholderia Fatty acid degradation Oleate TetR 8 16
TF PsrA - Caulobacterales Fatty acid degradation Oleate TetR 4 70
TF PsrA - Oceanospirillales/Alteromonadales Fatty acid degradation Oleate TetR 12 67
TF PsrA - Pseudomonadaceae Fatty acid degradation Oleate TetR 8 69
TF PsrA - Psychromonadaceae/Aeromonadales Fatty acid degradation Oleate TetR 6 19
TF PsrA - Ralstonia Fatty acid degradation Oleate TetR 6 9
TF PsrA - Rhizobiales Fatty acid degradation Oleate TetR 15 12
TF PsrA - Shewanellaceae Fatty acid degradation Oleate TetR 16 295
TF PsrA - Various betaproteobacteria Fatty acid degradation Oleate TetR 12 34
TF PsrA - Vibrionales Fatty acid degradation Oleate TetR 10 49
TF PsrA - Xanthomonadales Fatty acid degradation Oleate TetR 4 7
TF FadR - Alteromonadales Fatty acid degradation Oleoyl-CoA, Palmitoyl-CoA GntR/Others 9 39
TF FadR - Bacillales Fatty acid degradation Oleoyl-CoA, Palmitoyl-CoA TetR 11 48
TF FadR - Enterobacteriales Fatty acid degradation Oleoyl-CoA, Palmitoyl-CoA GntR/Others 12 130
TF FadR - Pasteurellales Fatty acid degradation Oleoyl-CoA, Palmitoyl-CoA GntR/Others 9 17
TF FadR - Psychromonadaceae/Aeromonadales Fatty acid degradation Oleoyl-CoA, Palmitoyl-CoA GntR/Others 6 10
TF FadR - Shewanellaceae Fatty acid degradation Oleoyl-CoA, Palmitoyl-CoA GntR/Others 16 101
TF FadR - Vibrionales Fatty acid degradation Oleoyl-CoA, Palmitoyl-CoA GntR/Others 10 77
TF FixJ - Caulobacterales Oxidative stress response Oxygen LuxR 4 8
TF FixJ - Rhizobiales Nitrogen fixation, Oxidative stress response Oxygen LuxR 15 10
TF FixJ - Rhizobiales Oxidative stress response Oxygen LuxR 15 24
TF FixK - Caulobacterales Nitrogen fixation, Oxidative stress response Oxygen CRP 4 25
TF FlpA - Lactobacillaceae Heavy metal resistance Oxygen CRP 15 32
TF FlpA - Streptococcaceae Heavy metal resistance Oxygen CRP 15 4
TF Fnr - Bacillales Anaerobic metabolism Oxygen CRP 11 39
TF Fnr - Enterobacteriales Anaerobic metabolism, Energy metabolism Oxygen CRP 12 685
TF Fnr - Shewanellaceae Anaerobic metabolism Oxygen CRP 16 541
TF FnrN - Rhodobacterales Nitrogen fixation, Oxidative stress response Oxygen CRP 15 85
TF FnrN - Rhodospirillales Nitrogen fixation, Oxidative stress response Oxygen CRP 9 18
TF FnrN - Sphingomonadales Nitrogen fixation, Oxidative stress response Oxygen CRP 7 23
TF FnrN/FixK/AadR - Rhizobiales Nitrogen fixation, Oxidative stress response Oxygen CRP 15 192
TF AzrR - Shewanellaceae Superoxide stress response Paraquat [Other] 16 34
TF SoxR - Alteromonadales Superoxide stress response Paraquat MerR 9 3
TF SoxR - Burkholderia Superoxide stress response Paraquat MerR 8 8
TF SoxR - Comamonadaceae Superoxide stress response Paraquat MerR 11 12
TF SoxR - Enterobacteriales Superoxide stress response Paraquat MerR 12 14
TF SoxR - Moraxellaceae Superoxide stress response Paraquat MerR 4 2
TF SoxR - Oceanospirillales/Alteromonadales Superoxide stress response Paraquat MerR 12 3
TF SoxR - Pseudomonadaceae Superoxide stress response Paraquat MerR 8 16
TF SoxR - Psychromonadaceae/Aeromonadales Superoxide stress response Paraquat MerR 6 3
TF SoxR - Ralstonia Superoxide stress response Paraquat MerR 6 3
TF SoxR - Rhizobiales Superoxide stress response Paraquat MerR 15 22
TF SoxR - Rhodobacterales Superoxide stress response Paraquat MerR 15 18
TF SoxR - Rhodospirillales Superoxide stress response Paraquat MerR 9 1
TF SoxR - Shewanellaceae Superoxide stress response Paraquat MerR 16 12
TF SoxR - Sphingomonadales Superoxide stress response Paraquat MerR 7 5
TF SoxR - Various betaproteobacteria Superoxide stress response Paraquat MerR 12 1
TF SoxR - Vibrionales Superoxide stress response Paraquat MerR 10 24
TF SoxR - Xanthomonadales Superoxide stress response Paraquat MerR 4 10
TF HTCS_Ara-2 - Bacteroidaceae Arabinan utilization Pectic galactan [Other] 11 11
TF HTCS_Pga - Bacteroidaceae Pectic galactan utilization Pectic galactan [Other] 11 3
RNA T-box(Phe) - Bacillales Amino acid metabolism Phe-tRNA RF00230 11 11
RNA T-box(Phe) - Chloroflexia Amino acid metabolism Phe-tRNA RF00230 5 2
RNA T-box(Phe) - Clostridiaceae Amino acid metabolism Phe-tRNA RF00230 20 22
RNA T-box(Phe) - Lactobacillaceae Amino acid metabolism Phe-tRNA RF00230 15 15
RNA T-box(Phe) - Staphylococcaceae Amino acid metabolism Phe-tRNA RF00230 7 8
RNA T-box(Phe) - Streptococcaceae Amino acid metabolism Phe-tRNA RF00230 15 15
TF PaaR - Actinobacteria Phenylacetic acid degradation Phenylacetyl-CoA TetR 17 85
TF PaaR - Burkholderia Phenylacetic acid degradation Phenylacetyl-CoA TetR 8 27
TF PaaR - Comamonadaceae Phenylacetic acid degradation Phenylacetyl-CoA TetR 11 13
TF PaaR - Corynebacteriaceae Phenylacetic acid degradation Phenylacetyl-CoA TetR 8 14
TF PaaR - Deinococcus-Thermus Phenylacetic acid degradation Phenylacetyl-CoA TetR 5 4
TF PaaR - Flavobacteria Phenylacetic acid degradation Phenylacetyl-CoA TetR 6 8
TF PaaR - Frankineae/Propionibacterineae/Pseudonocardiaceae Phenylacetic acid degradation Phenylacetyl-CoA TetR 9 14
TF PaaR - Micrococcineae Phenylacetic acid degradation Phenylacetyl-CoA TetR 14 38
TF PaaR - Mycobacteriaceae Phenylacetic acid degradation Phenylacetyl-CoA TetR 9 8
TF PaaR - Nocardiaceae Phenylacetic acid degradation Phenylacetyl-CoA TetR 4 22
TF PaaR - Ralstonia Phenylacetic acid degradation Phenylacetyl-CoA TetR 6 18
TF PaaR - Rhizobiales Phenylacetic acid degradation Phenylacetyl-CoA TetR 15 14
TF PaaR - Rhodobacterales Phenylacetic acid degradation Phenylacetyl-CoA TetR 15 13
TF PaaR - Streptomycetaceae Phenylacetic acid degradation Phenylacetyl-CoA TetR 4 24
TF PaaR - Various betaproteobacteria Phenylacetic acid degradation Phenylacetyl-CoA TetR 12 4
TF PaaR2 - Deinococcus-Thermus Phenylacetic acid degradation Phenylacetyl-CoA TetR 5 26
TF PaaX - Enterobacteriales Phenylacetic acid degradation Phenylacetyl-CoA [Other] 12 12
TF PhhR - Pseudomonadaceae Aromatic amino acid metabolism Phenylalanine, Tyrosine TyrR 8 32
TF TyrR - Enterobacteriales Aromatic amino acid metabolism Phenylalanine, Tyrosine TyrR 12 106
TF TyrR - Pasteurellales Aromatic amino acid metabolism Phenylalanine, Tyrosine TyrR 9 29
TF TyrR - Psychromonadaceae/Aeromonadales Aromatic amino acid metabolism Phenylalanine, Tyrosine TyrR 6 17
TF TyrR - Shewanellaceae Amino acid utilization Phenylalanine, Tyrosine TyrR 16 312
TF TyrR - Vibrionales Aromatic amino acid metabolism Phenylalanine, Tyrosine TyrR 10 83
TF TyrR1 - Alteromonadales Aromatic amino acid metabolism Phenylalanine, Tyrosine TyrR 9 32
TF TyrR2 - Alteromonadales Aromatic amino acid metabolism, Tyrosine degradation Phenylalanine, Tyrosine TyrR 9 7
TF GlnR - Lactobacillaceae Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase MerR 15 32
TF GlnR - Streptococcaceae Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase MerR 15 66
TF NtrC - Alteromonadales Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 9 26
TF NtrC - Burkholderia Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 8 27
TF NtrC - Caulobacterales Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 4 15
TF NtrC - Comamonadaceae Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 11 52
TF NtrC - Desulfuromonadales Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 9 56
TF NtrC - Enterobacteriales Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 12 130
TF NtrC - Moraxellaceae Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 4 27
TF NtrC - Oceanospirillales/Alteromonadales Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 12 63
TF NtrC - Pseudomonadaceae Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 8 49
TF NtrC - Psychromonadaceae/Aeromonadales Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 6 25
TF NtrC - Ralstonia Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 6 28
TF NtrC - Rhizobiales Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 15 86
TF NtrC - Rhodobacterales Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 15 92
TF NtrC - Rhodospirillales Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 9 40
TF NtrC - Shewanellaceae Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 16 94
TF NtrC - Sphingomonadales Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 7 25
TF NtrC - Various betaproteobacteria Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 12 47
TF NtrC - Vibrionales Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 10 29
TF NtrC - Xanthomonadales Nitrogen assimilation Phosphorylated NtrB, signal histidine kinase Fis 4 10
TF NhaR - Enterobacteriales Osmotic stress response Potassium ion LysR 12 11
TF NhaR - Shewanellaceae Osmotic stress response Potassium ion LysR 16 33
RNA preQ1-II - Lactobacillaceae Queuosine biosynthesis Pre-queuosine RF01054 15 3
RNA preQ1-II - Streptococcaceae Queuosine biosynthesis Pre-queuosine RF01054 15 14
RNA PreQ1 - Bacillales Queuosine biosynthesis Pre-queuosine1 RF00522 11 15
RNA PreQ1 - Clostridiaceae Queuosine biosynthesis Pre-queuosine1 RF00522 20 23
RNA PreQ1 - Lactobacillaceae Queuosine biosynthesis Pre-queuosine1 RF00522 15 9
RNA PreQ1 - Pasteurellales Queuosine biosynthesis Pre-queuosine1 RF00522 9 9
RNA PreQ1 - Rhodobacterales Queuosine biosynthesis Pre-queuosine1 RF00522 15 1
RNA PreQ1 - Staphylococcaceae Queuosine biosynthesis Pre-queuosine1 RF00522 7 13
RNA PreQ1 - Streptococcaceae Queuosine biosynthesis Pre-queuosine1 RF00522 15 2
RNA T-box(Pro) - Bacillales Amino acid metabolism Pro-tRNA RF00230 11 21
RNA T-box(Pro) - Chloroflexia Amino acid metabolism Pro-tRNA RF00230 5 1
RNA T-box(Pro) - Clostridiaceae Amino acid metabolism Pro-tRNA RF00230 20 16
RNA T-box(Pro) - Lactobacillaceae Amino acid metabolism Pro-tRNA RF00230 15 3
TF HypR - Burkholderia Proline and 4-hydrohyproline utilization Proline GntR/Others 8 5
TF HypR - Rhizobiales Proline and 4-hydrohyproline utilization Proline GntR/Others 15 18
TF PutR - Bacillales Proline utilization Proline SrmR 11 4
TF PcaO - Corynebacteriaceae Protocatechuate degradation Protocatechuate LuxR 8 2
TF PsiR - Rhizobiales Psicose utilization Psicose LacI 15 16
TF PspF - Desulfovibrionales Phage shock response PspA regulatory protein Fis 10 8
TF PuuR - Thermotogales Spermidine biosynthesis Putrescine XRE 11 16
RNA PyrR - Bacillales Pyrimidine metabolism PyrR RF00515 11 31
RNA PyrR - Chloroflexia Pyrimidine metabolism PyrR RF00515 5 3
RNA PyrR - Clostridiaceae Pyrimidine metabolism PyrR RF00515 20 45
RNA PyrR - Corynebacteriaceae Pyrimidine metabolism PyrR RF00515 8 6
RNA PyrR - Deinococcus-Thermus Pyrimidine metabolism PyrR RF00515 5 2
RNA PyrR - Lactobacillaceae Pyrimidine metabolism PyrR RF00515 15 49
RNA PyrR - Mycobacteriaceae Pyrimidine metabolism PyrR RF00515 9 8
RNA PyrR - Staphylococcaceae Pyrimidine metabolism PyrR RF00515 7 13
RNA PyrR - Streptococcaceae Pyrimidine metabolism PyrR RF00515 15 60
TF PdxQ - Alcaligenaceae Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 3 1
TF PdxQ - Clostridia-1 Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 8 2
TF PdxQ - Comamonadaceae Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 11 1
TF PdxQ - Desulfovibrionales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 10 2
TF PdxQ - Desulfuromonadales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 9 1
TF PdxQ - Frankineae/Propionibacterineae/Pseudonocardiaceae Metabolite transport, Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 9 2
TF PdxQ - Micrococcineae Metabolite transport, Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 14 8
TF PdxQ - Mycobacteriaceae Metabolite transport, Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 9 4
TF PdxQ - Nocardiaceae Metabolite transport, Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 4 3
TF PdxQ - Oceanospirillales/Alteromonadales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 12 1
TF PdxQ - Ralstonia Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 6 2
TF PdxQ - Rhizobiales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 15 2
TF PdxQ - Rhodobacterales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 15 1
TF PdxQ - Rhodospirillales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 9 1
TF PdxQ - Streptomycetaceae Metabolite transport, Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 4 8
TF PdxQ2 - Sphingomonadales Metabolite transport, Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 7 4
TF PdxR - Bacillales Pyridoxine biosynthesis Pyridoxal-5-phosphate GntR/MocR 11 2
TF PdxR - Clostridia-3 Pyridoxine biosynthesis Pyridoxal-5-phosphate GntR/MocR 14 21
TF PdxR - Corynebacteriaceae Pyridoxine biosynthesis Pyridoxal-5-phosphate GntR/MocR 8 3
TF PdxR - Enterococcaceae Pyridoxine biosynthesis Pyridoxal-5-phosphate GntR/MocR 2 5
TF PdxR - Frankineae/Propionibacterineae/Pseudonocardiaceae Pyridoxine biosynthesis Pyridoxal-5-phosphate GntR/MocR 9 1
TF PdxR - Lactobacillaceae Pyridoxine biosynthesis Pyridoxal-5-phosphate GntR/MocR 15 4
TF PdxR - Listeriaceae Pyridoxine biosynthesis Pyridoxal-5-phosphate GntR/MocR 4 8
TF PdxR - Micrococcineae Pyridoxine biosynthesis Pyridoxal-5-phosphate GntR/MocR 14 3
TF PdxR - Pasteurellales Pyridoxine biosynthesis Pyridoxal-5-phosphate GntR/MocR 9 3
TF PdxR - Staphylococcaceae Pyridoxine biosynthesis Pyridoxal-5-phosphate GntR/MocR 7 7
TF PdxR - Streptococcaceae Pyridoxine biosynthesis Pyridoxal-5-phosphate GntR/MocR 15 14
TF PdxR - Thermoanaerobacterales Pyridoxine biosynthesis Pyridoxal-5-phosphate GntR/MocR 7 4
TF PdxR2 - Alcaligenaceae Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 3 3
TF PdxR2 - Deinococcus-Thermus Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 5 1
TF PdxR2 - Enterobacteriales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 12 18
TF PdxR2 - Frankineae/Propionibacterineae/Pseudonocardiaceae Pyridoxine biosynthesis Pyridoxal-5-phosphate GntR/MocR 9 7
TF PdxR2 - Micrococcineae Pyridoxine biosynthesis Pyridoxal-5-phosphate GntR/MocR 14 4
TF PdxR2 - Mycobacteriaceae Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 9 1
TF PdxR2 - Nocardiaceae Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 4 4
TF PdxR2 - Ralstonia Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 6 2
TF PdxR2 - Xanthomonadales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 4 2
TF PdxW - Alcaligenaceae Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 3 3
TF PdxW - Alteromonadales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 9 2
TF PdxW - Bacillales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 11 2
TF PdxW - Burkholderia Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 8 14
TF PdxW - Caulobacterales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 4 2
TF PdxW - Comamonadaceae Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 11 2
TF PdxW - Desulfuromonadales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 9 2
TF PdxW - Enterobacteriales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 12 2
TF PdxW - Oceanospirillales/Alteromonadales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 12 2
TF PdxW - Ralstonia Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 6 3
TF PdxW - Rhizobiales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 15 4
TF PdxW - Rhodobacterales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 15 1
TF PdxW - Rhodospirillales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 9 2
TF PdxW - Shewanellaceae Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 16 1
TF PdxW - Sphingobacteria Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 8 2
TF PdxW - Various betaproteobacteria Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 12 1
TF PdxW - Vibrionales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 10 6
TF PdxW2 - Burkholderia Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 8 6
TF PdxW2 - Comamonadaceae Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 11 1
TF PdxW2 - Moraxellaceae Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 4 1
TF PdxW2 - Oceanospirillales/Alteromonadales Pyridoxine/pyridoxal homeostasis Pyridoxal-5-phosphate GntR/MocR 12 1
TF PdxW2 - Pseudomonadaceae Pyridoxine biosynthesis Pyridoxal-5-phosphate GntR/MocR 8 6
TF UriR - Enterococcaceae Nucleoside utilization Pyrimidine nucleoside LacI 2 3
TF UriR - Listeriaceae Nucleoside utilization Pyrimidine nucleoside LacI 4 4
TF PdhR - Alteromonadales Pyruvate metabolism Pyruvate GntR/Others 9 17
TF PdhR - Enterobacteriales Pyruvate metabolism Pyruvate GntR/Others 12 44
TF PdhR - Oceanospirillales/Alteromonadales Pyruvate metabolism Pyruvate GntR/Others 12 3
TF PdhR - Psychromonadaceae/Aeromonadales Pyruvate metabolism Pyruvate GntR/Others 6 9
TF PdhR - Shewanellaceae Pyruvate metabolism Pyruvate GntR/Others 16 109
TF PdhR - Vibrionales Pyruvate metabolism Pyruvate GntR/Others 10 18
TF QsuR - Corynebacteriaceae Aromatic amino acid metabolism Quinate, Shikimate LysR 8 4
TF RafR - Enterobacteriales Raffinose utilization Raffinose LacI 12 8
TF YtrA - Bacillales Ramoplanin resistance Ramoplanin GntR/Others 11 8
TF RhaR - Bacteroidaceae Rhamnose utilization Rhamnose AraC 11 8
TF RhaR - Chloroflexia Rhamnose utilization Rhamnose DeoR 5 12
TF RhaR - Enterobacteriales Rhamnose utilization Rhamnose AraC 12 7
TF RhaR - Enterococcaceae Rhamnose utilization Rhamnose AraC 2 2
TF RhaR - Frankineae/Propionibacterineae/Pseudonocardiaceae Rhamnose utilization Rhamnose LacI 9 10
TF RhaR - Micrococcineae Rhamnose utilization Rhamnose LacI 14 29
TF RhaR - Mycobacteriaceae Rhamnose utilization Rhamnose LacI 9 2
TF RhaR - Nocardiaceae Rhamnose utilization Rhamnose LacI 4 5
TF RhaR - Rhizobiales Rhamnose utilization Rhamnose DeoR 15 39
TF RhaR - Rhodobacterales Rhamnose utilization Rhamnose DeoR 15 11
TF RhaR - Streptomycetaceae Rhamnose utilization Rhamnose LacI 4 14
TF RhaR - Thermotogales Rhamnose oligosaccharides utilization, Rhamnose utilization Rhamnose DeoR 11 13
TF RhaS - Enterobacteriales Rhamnose utilization Rhamnose AraC 12 31
TF RhaS - Pasteurellales Rhamnose utilization Rhamnose AraC 9 1
TF RhaS - Psychromonadaceae/Aeromonadales Rhamnose utilization Rhamnose AraC 5 4
TF RhaR - Bacillales Rhamnose utilization Rhamnulose-1-phosphate DeoR 11 7
TF RhiR - Enterobacteriales Rhamnogalacturonides utilization Rhamogalacturonate oligosaccharides LacI 12 2
TF RhiR - Rhizobiales Rhamnogalacturonides utilization Rhamogalacturonate oligosaccharides LacI 15 16
TF RbtR - Rhodobacterales Ribitol utilization Ribitol LacI 15 4
TF RbsR - Bacillales Ribose utilization Ribose LacI 11 11
TF RbsR - Burkholderia Ribose utilization Ribose LacI 8 7
TF RbsR - Clostridia-1 Ribose utilization Ribose LacI 8 5
TF RbsR - Comamonadaceae Ribose utilization Ribose LacI 11 2
TF RbsR - Corynebacteriaceae Ribose utilization Ribose LacI 8 6
TF RbsR - Desulfovibrionales Ribose utilization Ribose LacI 10 1
TF RbsR - Enterobacteriales Ribose utilization Ribose LacI 12 17
TF RbsR - Lactobacillaceae Ribose utilization Ribose LacI 15 18
TF RbsR - Pasteurellales Ribose utilization Ribose LacI 9 6
TF RbsR - Pseudomonadaceae Ribose utilization Ribose LacI 8 5
TF RbsR - Psychromonadaceae/Aeromonadales Ribose utilization Ribose LacI 6 8
TF RbsR - Ralstonia Ribose utilization Ribose LacI 6 2
TF RbsR - Shewanellaceae Ribose utilization Ribose LacI 16 4
TF RbsR - Staphylococcaceae Ribose utilization Ribose LacI 7 2
TF RbsR - Streptomycetaceae Ribose utilization Ribose LacI 4 3
TF RbsR - Thermoanaerobacterales Ribose utilization Ribose LacI 7 4
TF RbsR - Thermotogales Ribose utilization Ribose LacI 11 15
TF RbsR - Vibrionales Ribose utilization Ribose LacI 10 15
TF RbsR1 - Bifidobacteriaceae Ribose utilization Ribose LacI 10 5
TF RbsR2 - Bifidobacteriaceae Ribonucleoside utilization Ribose LacI 10 6
TF RbsR2 - Rhizobiales Ribose utilization Ribose LacI 15 4
TF RbsR2 - Rhodobacterales Ribose utilization Ribose LacI 15 3
TF RbsR2 - Staphylococcaceae Ribose utilization Ribose LacI 7 7
TF RbsR2 - Streptococcaceae Ribose utilization Ribose LacI 15 9
TF RbsR3 - Bifidobacteriaceae Ribonucleoside utilization Ribose LacI 10 11
RNA SAH_riboswitch - Burkholderia Methionine metabolism S-adenosylhomocysteine RF01057 8 8
RNA SAH_riboswitch - Comamonadaceae Methionine metabolism S-adenosylhomocysteine RF01057 11 21
RNA SAH_riboswitch - Moraxellaceae Methionine metabolism S-adenosylhomocysteine RF01057 4 2
RNA SAH_riboswitch - Mycobacteriaceae Methionine metabolism S-adenosylhomocysteine RF01057 9 6
RNA SAH_riboswitch - Pseudomonadaceae Methionine metabolism S-adenosylhomocysteine RF01057 8 7
RNA SAH_riboswitch - Ralstonia Methionine metabolism S-adenosylhomocysteine RF01057 6 6
RNA SAH_riboswitch - Various betaproteobacteria Methionine metabolism S-adenosylhomocysteine RF01057 12 14
RNA SAH_riboswitch - Xanthomonadales Methionine metabolism S-adenosylhomocysteine RF01057 4 3
TF SahR - Caulobacterales Methionine metabolism S-adenosylhomocysteine ArsR 4 14
TF SahR - Desulfovibrionales Methionine metabolism S-adenosylhomocysteine ArsR 10 31
TF SahR - Desulfuromonadales Methionine metabolism S-adenosylhomocysteine ArsR 9 6
TF SahR - Oceanospirillales/Alteromonadales Methionine metabolism S-adenosylhomocysteine ArsR 12 15
TF SahR - Pseudomonadaceae Methionine metabolism S-adenosylhomocysteine ArsR 8 8
TF SahR - Rhizobiales Methionine metabolism S-adenosylhomocysteine ArsR 15 36
TF SahR - Rhodobacterales Methionine metabolism S-adenosylhomocysteine ArsR 15 4
TF SahR - Rhodospirillales Methionine metabolism S-adenosylhomocysteine ArsR 9 17
TF SahR - Sphingomonadales Methionine metabolism S-adenosylhomocysteine ArsR 7 25
TF McbR - Corynebacteriaceae Methionine biosynthesis S-adenosylhomocysteine, S-adenosylmethionine TetR 8 162
RNA SAM-SAH - Rhodobacterales Methionine metabolism S-adenosylhomocysteine, S-adenosylmethionine RF01727 15 13
TF MetJ - Alteromonadales Methionine biosynthesis, Methionine metabolism S-adenosylmethionine MetJ 9 110
TF MetJ - Enterobacteriales Methionine biosynthesis, Methionine metabolism S-adenosylmethionine MetJ 12 167
TF MetJ - Pasteurellales Methionine biosynthesis, Methionine metabolism S-adenosylmethionine MetJ 9 50
TF MetJ - Psychromonadaceae/Aeromonadales Methionine biosynthesis, Methionine metabolism S-adenosylmethionine MetJ 6 84
TF MetJ - Shewanellaceae Methionine biosynthesis, Methionine metabolism S-adenosylmethionine MetJ 16 397
TF MetJ - Vibrionales Methionine biosynthesis, Methionine metabolism S-adenosylmethionine MetJ 10 218
RNA SAM - Bacillales Methionine biosynthesis S-adenosylmethionine RF00162 11 98
RNA SAM - Chlorobiales Methionine biosynthesis S-adenosylmethionine RF00162 11 14
RNA SAM - Chloroflexia Methionine biosynthesis S-adenosylmethionine RF00162 5 14
RNA SAM - Clostridiaceae Methionine biosynthesis S-adenosylmethionine RF00162 20 72
RNA SAM - Corynebacteriaceae Methionine biosynthesis S-adenosylmethionine RF00162 8 1
RNA SAM - Cyanobacteria Methionine biosynthesis S-adenosylmethionine RF00162 14 2
RNA SAM - Deinococcus-Thermus Methionine biosynthesis S-adenosylmethionine RF00162 5 9
RNA SAM - Desulfovibrionales Methionine biosynthesis S-adenosylmethionine RF00162 10 4
RNA SAM - Lactobacillaceae Methionine biosynthesis S-adenosylmethionine RF00162 15 2
RNA SAM - Staphylococcaceae Methionine biosynthesis S-adenosylmethionine RF00162 7 40
RNA SAM - Thermotogales Methionine biosynthesis S-adenosylmethionine RF00162 11 1
RNA SAM-IV - Mycobacteriaceae Sulfur metabolism S-adenosylmethionine RF00634 9 13
RNA SAM_alpha - Rhizobiales Methionine biosynthesis S-adenosylmethionine RF00521 15 25
RNA SAM_alpha - Rhodobacterales Methionine biosynthesis S-adenosylmethionine RF00521 15 14
RNA SMK_box_riboswitch - Lactobacillaceae Methionine metabolism S-adenosylmethionine RF01767 15 13
TF SamR - Xanthomonadales Methionine metabolism S-adenosylmethionine ArsR 4 17
TF SaeR - Staphylococcaceae Virulence SaeS, sensor histidine kinase OmpR 7 45
TF BsdA - Bacillales Salicylic acid resistance Salicylate LysR 11 6
TF SdpR - Bacillales Toxin-antitoxin system SdpI, signal transduction protein ArsR 11 9
RNA T-box(Ser) - Bacillales Amino acid metabolism Ser-tRNA RF00230 11 13
RNA T-box(Ser) - Chloroflexia Amino acid metabolism Ser-tRNA RF00230 5 2
RNA T-box(Ser) - Clostridiaceae Amino acid metabolism Ser-tRNA RF00230 20 16
RNA T-box(Ser) - Lactobacillaceae Amino acid metabolism Ser-tRNA RF00230 15 15
RNA T-box(Ser) - Staphylococcaceae Amino acid metabolism Ser-tRNA RF00230 7 7
RNA T-box(Ser) - Streptococcaceae Amino acid metabolism Ser-tRNA RF00230 15 15
TF NanR - Bifidobacteriaceae Sialic acid utilization Sialic acid GntR/Others 10 11
TF SinR - Bacillales Biofilm formation SinI, antirepressor protein XRE 11 15
TF GutR - Bacillales Sorbitol utilization Sorbitol GutR 11 4
TF SmoR - Rhodobacterales Mannitol utilization, Sorbitol utilization Sorbitol LacI 15 15
TF SrlR - Enterobacteriales Sorbitol utilization Sorbitol-6-phosphate DeoR 12 6
TF SorC - Enterobacteriales Sorbose utilization Sorbose SorC 12 1
TF CscR - Bifidobacteria Sucrose utilization Sucrose LacI 10 16
TF CscR - Enterobacteriales Sucrose utilization Sucrose LacI 12 10
TF ScrR - Alteromonadales Sucrose utilization Sucrose LacI 9 21
TF ScrR - Bacillales Sucrose utilization Sucrose LacI 11 7
TF ScrR - Bifidobacteriaceae Sucrose utilization Sucrose LacI 10 23
TF ScrR - Burkholderia Sucrose utilization Sucrose LacI 8 20
TF ScrR - Oceanospirillales/Alteromonadales Sucrose utilization Sucrose LacI 12 4
TF ScrR - Pseudomonadaceae Sucrose utilization Sucrose LacI 8 6
TF ScrR - Shewanellaceae Sucrose utilization Sucrose LacI 16 16
TF ScrR - Sphingomonadales Sucrose utilization Sucrose LacI 7 9
TF SuxR - Xanthomonadales Sucrose utilization Sucrose LacI 4 4
TF ScrR - Clostridia-1 Sucrose utilization Sucrose-6-phosphate LacI 8 3
TF ScrR - Enterobacteriales Sucrose utilization Sucrose-6-phosphate LacI 12 16
TF ScrR - Lactobacillaceae Sucrose utilization Sucrose-6-phosphate LacI 15 24
TF ScrR - Psychromonadaceae/Aeromonadales Sucrose utilization Sucrose-6-phosphate LacI 6 8
TF ScrR - Ralstonia Sucrose utilization Sucrose-6-phosphate LacI 6 2
TF ScrR - Staphylococcaceae Sucrose utilization Sucrose-6-phosphate LacI 7 16
TF ScrR - Streptococcaceae Sucrose utilization Sucrose-6-phosphate LacI 15 27
TF ScrR - Vibrionales Sucrose utilization Sucrose-6-phosphate LacI 10 4
TF ScrR2 - Bacillales Sucrose utilization Sucrose-6-phosphate LacI 11 5
TF ScrR2 - Lactobacillaceae Sucrose utilization Sucrose-6-phosphate LacI 15 2
TF SutR - Corynebacteriaceae Sulfur metabolism Sulfate ArsR 8 2
TF SutR - Micrococcineae Sulfur metabolism Sulfate ArsR 14 4
TF SutR - Mycobacteriaceae Sulfur metabolism Sulfate ArsR 9 4
TF SsuR - Corynebacteriaceae Sulfur metabolism Sulfate, Sulfite ROK 8 6
TF CysL - Bacillales Sulfite reduction Sulfate, Sulfite, Thiosulfate LysR 11 28
TF TagR - Lactobacillaceae Tagatose utilization Tagatose-6-phosphate RpiR 15 8
TF TagR - Streptococcaceae Tagatose utilization Tagatose-6-phosphate RpiR 15 2
TF TauR - Burkholderia Taurine utilization Taurine GntR/MocR 8 9
TF TauR - Comamonadaceae Taurine utilization Taurine GntR/MocR 11 11
TF TauR - Enterobacteriales Taurine utilization Taurine GntR/MocR 12 1
TF TauR - Nocardiaceae Taurine utilization Taurine GntR/MocR 4 10
TF TauR - Oceanospirillales/Alteromonadales Taurine utilization Taurine GntR/MocR 12 3
TF TauR - Psychromonadaceae/Aeromonadales Taurine utilization Taurine GntR/MocR 6 2
TF TauR - Ralstonia Taurine utilization Taurine GntR/MocR 6 9
TF TauR - Rhizobiales Taurine utilization Taurine GntR/MocR 15 1
TF TauR - Rhodobacterales Taurine utilization Taurine GntR/MocR 15 19
RNA THF - Clostridiaceae Folate metabolism Tetrahydrofolate RF01831 20 11
RNA THF - Lactobacillaceae Folate metabolism Tetrahydrofolate RF01831 15 8
RNA THF - Streptococcaceae Folate metabolism Tetrahydrofolate RF01831 15 4
TF TtrR - Enterobacteriales Tetrathionate reduction Tetrathionate LuxR 12 8
TF TtrR - Pasteurellales Tetrathionate reduction Tetrathionate LuxR 9 4
TF TtrR - Shewanellaceae Tetrathionate reduction Tetrathionate LuxR 16 10
TF TtrR - Vibrionales Tetrathionate reduction Tetrathionate LuxR 10 6
TF ThiR - Halobacteriales Thiamine biosynthesis, Thiamine transport Thiamine phosphate [Other] 11 40
TF ThiR - Sulfolobales Thiamine biosynthesis, Thiamine transport Thiamine phosphate [Other] 5 13
TF ThiR - Thermococcales Thiamine biosynthesis, Thiamine transport Thiamine phosphate [Other] 7 35
TF ThiR - Thermoproteales Thiamine biosynthesis, Thiamine transport Thiamine phosphate [Other] 5 22
RNA TPP - Bacillales Thiamine biosynthesis Thiamine pyrophosphate RF00059 11 47
RNA TPP - Bacteroidaceae Thiamine biosynthesis Thiamine pyrophosphate RF00059 11 19
RNA TPP - Bifidobacteriaceae Thiamine biosynthesis Thiamine pyrophosphate RF00059 9 34
RNA TPP - Burkholderia Thiamine biosynthesis Thiamine pyrophosphate RF00059 8 18
RNA TPP - Campylobacteraceae Riboflavin biosynthesis Thiamine pyrophosphate RF00059 9 5
RNA TPP - Caulobacterales Thiamine biosynthesis Thiamine pyrophosphate RF00059 4 4
RNA TPP - Chlorobiales Thiamine biosynthesis Thiamine pyrophosphate RF00059 11 11
RNA TPP - Chloroflexia Thiamine biosynthesis Thiamine pyrophosphate RF00059 5 14
RNA TPP - Clostridia-3 Thiamine biosynthesis Thiamine pyrophosphate RF00059 14 34
RNA TPP - Clostridiaceae Thiamine biosynthesis Thiamine pyrophosphate RF00059 20 62
RNA TPP - Comamonadaceae Thiamine biosynthesis Thiamine pyrophosphate RF00059 11 25
RNA TPP - Corynebacteriaceae Thiamine biosynthesis Thiamine pyrophosphate RF00059 8 23
RNA TPP - Cyanobacteria Thiamine biosynthesis Thiamine pyrophosphate RF00059 14 14
RNA TPP - Deinococcus-Thermus Thiamine biosynthesis Thiamine pyrophosphate RF00059 5 10
RNA TPP - Desulfovibrionales Thiamine biosynthesis Thiamine pyrophosphate RF00059 10 17
RNA TPP - Desulfuromonadales Thiamine biosynthesis Thiamine pyrophosphate RF00059 9 15
RNA TPP - Enterobacteriales Thiamine biosynthesis Thiamine pyrophosphate RF00059 12 38
RNA TPP - Francisellaceae Thiamine biosynthesis Thiamine pyrophosphate RF00059 3 4
RNA TPP - Helicobacteraceae Thiamine biosynthesis, Thiamine transport Thiamine pyrophosphate RF00059 8 3
RNA TPP - Lactobacillaceae Thiamine biosynthesis Thiamine pyrophosphate RF00059 15 36
RNA TPP - Moraxellaceae Thiamine biosynthesis Thiamine pyrophosphate RF00059 4 5
RNA TPP - Mycobacteriaceae Thiamine biosynthesis Thiamine pyrophosphate RF00059 9 22
RNA TPP - Oceanospirillales/Alteromonadales Thiamine biosynthesis Thiamine pyrophosphate RF00059 12 23
RNA TPP - Pasteurellales Thiamine biosynthesis Thiamine pyrophosphate RF00059 9 20
RNA TPP - Pseudomonadaceae Thiamine biosynthesis Thiamine pyrophosphate RF00059 8 9
RNA TPP - Psychromonadaceae/Aeromonadales Thiamine biosynthesis Thiamine pyrophosphate RF00059 6 14
RNA TPP - Ralstonia Thiamine biosynthesis Thiamine pyrophosphate RF00059 6 6
RNA TPP - Rhizobiales Thiamine biosynthesis Thiamine pyrophosphate RF00059 15 30
RNA TPP - Rhodobacterales Thiamine biosynthesis Thiamine pyrophosphate RF00059 15 30
RNA TPP - Rhodospirillales Thiamine biosynthesis Thiamine pyrophosphate RF00059 9 15
RNA TPP - Shewanellaceae Thiamine biosynthesis Thiamine pyrophosphate RF00059 16 31
RNA TPP - Sphingomonadales Thiamine biosynthesis Thiamine pyrophosphate RF00059 7 7
RNA TPP - Staphylococcaceae Thiamine biosynthesis Thiamine pyrophosphate RF00059 7 30
RNA TPP - Streptococcaceae Thiamine biosynthesis Thiamine pyrophosphate RF00059 15 23
RNA TPP - Streptomycetaceae Thiamine biosynthesis Thiamine pyrophosphate RF00059 4 13
RNA TPP - Thermoanaerobacterales Thiamine biosynthesis Thiamine pyrophosphate RF00059 7 17
RNA TPP - Thermotogales Thiamine biosynthesis Thiamine pyrophosphate RF00059 11 16
RNA TPP - Various betaproteobacteria Thiamine biosynthesis Thiamine pyrophosphate RF00059 12 16
RNA TPP - Vibrionales Thiamine biosynthesis Thiamine pyrophosphate RF00059 10 30
RNA TPP - Xanthomonadales Thiamine biosynthesis Thiamine pyrophosphate RF00059 4 5
TF PhsR - Shewanellaceae Thiosulfate reduction Thiosulfate LuxR 16 17
TF PhsR - Vibrionales Thiosulfate reduction Thiosulfate LuxR 10 6
TF TsrR - Shewanellaceae Thiosulfate reduction Thiosulfate [Other] 16 40
RNA T-box(Thr) - Bacillales Amino acid metabolism Thr-tRNA RF00230 11 20
RNA T-box(Thr) - Chloroflexia Amino acid metabolism Thr-tRNA RF00230 5 4
RNA T-box(Thr) - Clostridiaceae Amino acid metabolism Thr-tRNA RF00230 20 22
RNA T-box(Thr) - Lactobacillaceae Amino acid metabolism Thr-tRNA RF00230 15 16
RNA T-box(Thr) - Staphylococcaceae Amino acid metabolism Thr-tRNA RF00230 7 9
RNA T-box(Thr) - Streptococcaceae Amino acid metabolism Thr-tRNA RF00230 15 15
TF ThuR - Rhizobiales Trehalose utilization Trehalose LacI 15 18
TF TreR - Alteromonadales Trehalose utilization Trehalose LacI 9 16
TF TreR - Shewanellaceae Trehalose utilization Trehalose LacI 16 11
TF TreR - Thermoanaerobacterales Trehalose utilization Trehalose LacI 7 6
TF TreR - Thermotogales Trehalose utilization Trehalose ROK 11 19
TF TreR - Various betaproteobacteria Trehalose utilization Trehalose GntR/Others 12 2
TF TreR (RgrA) - Streptococcaceae Trehalose utilization Trehalose-6-phosphate GntR/Others 15 4
TF TreR - Bacillales Trehalose utilization Trehalose-6-phosphate GntR/Others 11 20
TF TreR - Clostridia-1 Trehalose utilization Trehalose-6-phosphate GntR/Others 8 7
TF TreR - Clostridia-2 Trehalose utilization Trehalose-6-phosphate GntR/Others 3 5
TF TreR - Clostridia-3 Trehalose utilization Trehalose-6-phosphate GntR/Others 14 4
TF TreR - Enterobacteriales Trehalose utilization Trehalose-6-phosphate LacI 12 8
TF TreR - Enterococcaceae Trehalose utilization Trehalose-6-phosphate GntR/Others 2 4
TF TreR - Lactobacillaceae Trehalose utilization Trehalose-6-phosphate GntR/Others 15 21
TF TreR - Listeriaceae Trehalose utilization Trehalose-6-phosphate GntR/Others 4 4
TF TreR - Pseudomonadaceae Trehalose utilization Trehalose-6-phosphate GntR/Others 8 4
TF TreR - Psychromonadaceae/Aeromonadales Trehalose utilization Trehalose-6-phosphate LacI 6 7
TF TreR - Staphylococcaceae Trehalose utilization Trehalose-6-phosphate GntR/Others 7 5
TF TreR - Streptococcaceae Trehalose utilization Trehalose-6-phosphate GntR/Others 15 16
TF TreR - Vibrionales Trehalose utilization Trehalose-6-phosphate LacI 10 13
RNA T-box(Trp) - Bacillales Amino acid metabolism Trp-tRNA RF00230 11 17
RNA T-box(Trp) - Chloroflexia Amino acid metabolism Trp-tRNA RF00230 5 5
RNA T-box(Trp) - Clostridiaceae Amino acid metabolism Trp-tRNA RF00230 20 41
RNA T-box(Trp) - Lactobacillaceae Amino acid metabolism Trp-tRNA RF00230 15 15
RNA T-box(Trp) - Staphylococcaceae Amino acid metabolism Trp-tRNA RF00230 7 10
RNA T-box(Trp) - Streptococcaceae Amino acid metabolism Trp-tRNA RF00230 15 24
TF PedR - Cyanobacteria Carbon fixation, Photosynthesis Trx, thioredoxin protein LuxR 14 56
TF TrpR - Chlamydiales Tryptophan biosynthesis Tryptophan TrpR 7 3
TF TrpR - Enterobacteriales Tryptophan biosynthesis Tryptophan TrpR 12 44
TF TrpR - Francisellaceae Tryptophan biosynthesis Tryptophan TrpR 3 3
TF TrpR - Moraxellaceae Tryptophan biosynthesis Tryptophan TrpR 4 3
TF TrpR - Oceanospirillales/Alteromonadales Tryptophan biosynthesis Tryptophan TrpR 12 2
TF TrpR - Pasteurellales Tryptophan biosynthesis Tryptophan TrpR 9 34
TF TrpR - Psychromonadaceae/Aeromonadales Tryptophan biosynthesis Tryptophan TrpR 6 2
TF TrpR - Shewanellaceae Aromatic amino acid metabolism Tryptophan TrpR 16 32
TF TrpR - Vibrionales Tryptophan biosynthesis Tryptophan TrpR 10 24
TF TrpR - Xanthomonadales Tryptophan biosynthesis Tryptophan TrpR 4 1
TF ModE3 - Alcaligenaceae Tungsten homeostasis Tungsten ModE 3 5
TF ModE3 - Comamonadaceae Tungsten homeostasis Tungsten ModE 11 12
TF ModE3 - Ralstonia Tungsten homeostasis Tungsten ModE 6 12
RNA T-box(Tyr) - Bacillales Amino acid metabolism Tyr-tRNA RF00230 11 19
RNA T-box(Tyr) - Clostridiaceae Amino acid metabolism Tyr-tRNA RF00230 20 16
RNA T-box(Tyr) - Lactobacillaceae Amino acid metabolism Tyr-tRNA RF00230 15 29
RNA T-box(Tyr) - Staphylococcaceae Amino acid metabolism Tyr-tRNA RF00230 7 8
TF DesT - Pseudomonadaceae Fatty acid biosynthesis Unsaturated acyl-ACP, Unsaturated acyl-CoA TetR 8 13
TF FabR - Alteromonadales Fatty acid biosynthesis Unsaturated acyl-ACP, Unsaturated acyl-CoA TetR 9 45
TF FabR - Enterobacteriales Fatty acid biosynthesis Unsaturated acyl-ACP, Unsaturated acyl-CoA TetR 12 40
TF FabR - Moraxellaceae Fatty acid biosynthesis Unsaturated acyl-ACP, Unsaturated acyl-CoA TetR 4 6
TF FabR - Oceanospirillales/Alteromonadales Fatty acid biosynthesis Unsaturated acyl-ACP, Unsaturated acyl-CoA TetR 12 8
TF FabR - Pasteurellales Fatty acid biosynthesis Unsaturated acyl-ACP, Unsaturated acyl-CoA TetR 9 19
TF FabR - Psychromonadaceae/Aeromonadales Fatty acid biosynthesis Unsaturated acyl-ACP, Unsaturated acyl-CoA TetR 6 27
TF FabR - Shewanellaceae Fatty acid biosynthesis Unsaturated acyl-ACP, Unsaturated acyl-CoA TetR 16 118
TF FabR - Vibrionales Fatty acid biosynthesis Unsaturated acyl-ACP, Unsaturated acyl-CoA TetR 10 67
TF FabR - Xanthomonadales Fatty acid biosynthesis Unsaturated acyl-ACP, Unsaturated acyl-CoA TetR 4 6
TF FabR2 - Oceanospirillales/Alteromonadales Fatty acid biosynthesis Unsaturated acyl-ACP, Unsaturated acyl-CoA TetR 12 6
TF FabR2 - Pseudomonadaceae Fatty acid biosynthesis Unsaturated acyl-ACP, Unsaturated acyl-CoA TetR 8 6
TF RutR - Alteromonadales Pyrimidine utilization Uracil TetR 9 19
TF RutR - Burkholderia Pyrimidine utilization Uracil TetR 8 12
TF RutR - Caulobacterales Pyrimidine utilization Uracil TetR 4 4
TF RutR - Enterobacteriales Pyrimidine utilization Uracil TetR 12 13
TF RutR - Moraxellaceae Pyrimidine utilization Uracil TetR 4 8
TF RutR - Oceanospirillales/Alteromonadales Pyrimidine utilization Uracil TetR 12 32
TF RutR - Pseudomonadaceae Pyrimidine utilization Uracil TetR 8 29
TF RutR - Psychromonadaceae/Aeromonadales Pyrimidine utilization Uracil TetR 6 4
TF RutR - Ralstonia Pyrimidine utilization Uracil TetR 6 4
TF RutR - Rhizobiales Pyrimidine utilization Uracil TetR 15 44
TF RutR - Rhodobacterales Pyrimidine utilization Uracil TetR 15 62
TF RutR - Rhodospirillales Pyrimidine utilization Uracil TetR 9 2
TF RutR - Vibrionales Pyrimidine utilization Uracil TetR 10 4
TF RutR2 - Alteromonadales Pyrimidine utilization Uracil TetR 9 2
TF RutR2 - Pseudomonadaceae Pyrimidine utilization Uracil TetR 8 7
TF RutR3 - Pseudomonadaceae Pyrimidine utilization Uracil TetR 8 23
TF RutR4 - Pseudomonadaceae Pyrimidine utilization Uracil TetR 9 4
TF UraR - Burkholderia Pyrimidine utilization Uracil GntR/Others 8 16
TF UraR - Ralstonia Pyrimidine utilization Uracil GntR/Others 6 33
RNA T-box(Val) - Bacillales Amino acid metabolism Val-tRNA RF00230 11 10
RNA T-box(Val) - Chloroflexia Amino acid metabolism Val-tRNA RF00230 5 1
RNA T-box(Val) - Clostridiaceae Amino acid metabolism Val-tRNA RF00230 20 22
RNA T-box(Val) - Deinococcus-Thermus Amino acid metabolism Val-tRNA RF00230 5 2
RNA T-box(Val) - Lactobacillaceae Amino acid metabolism Val-tRNA RF00230 15 21
RNA T-box(Val) - Staphylococcaceae Amino acid metabolism Val-tRNA RF00230 7 6
RNA T-box(Val) - Streptococcaceae Amino acid metabolism Val-tRNA RF00230 15 15
TF VanR - Alteromonadales Vanillate utilization Vanillate GntR/Others 9 12
TF VanR - Burkholderia Vanillate utilization Vanillate GntR/Others 8 2
TF VanR - Caulobacterales Vanillate utilization Vanillate GntR/Others 4 9
TF VanR - Comamonadaceae Vanillate utilization Vanillate GntR/Others 11 14
TF VanR - Moraxellaceae Vanillate utilization Vanillate GntR/Others 4 10
TF VanR - Oceanospirillales/Alteromonadales Vanillate utilization Vanillate GntR/Others 12 12
TF VanR - Pseudomonadaceae Vanillate utilization Vanillate GntR/Others 8 13
TF VanR - Rhizobiales Vanillate utilization Vanillate GntR/Others 15 18
TF VanR - Xanthomonadales Vanillate utilization Vanillate GntR/Others 4 12
TF SO1758 - Shewanellaceae [Other] 16 11
TF SO1578 - Shewanellaceae Glutathione metabolism TetR 16 24
TF SO1703 - Shewanellaceae Multidrug resistance TetR 16 11
TF SO1415 - Shewanellaceae TetR 16 18
TF SO1393 - Shewanellaceae TetR 16 20
TF SO0734 - Shewanellaceae PadR 16 4
TF SO0193 - Shewanellaceae Fatty acid metabolism TetR 16 11
TF SO0072 - Shewanellaceae Hypothetical ABC transporter GntR/Others 16 29
TF PUR - Shewanellaceae Purine metabolism [Other] 16 60
TF PnuR - Shewanellaceae NAD biosynthesis CRP 16 4
TF Lp_3221 - Lactobacillaceae Sugar utilization LacI 15 6
TF CcpB - Streptococcaceae Sugar utilization LacI 15 5
TF BfrR - Chloroflexia Fructooligosaccharides utilization LacI 5 2
TF MhpR - Chloroflexia Utilization of aromatic compounds IclR 5 6
TF LiuR - Shewanellaceae Branched-chain amino acid degradation MerR 16 134
TF DeoR - Shewanellaceae Nucleoside utilization CRP 16 9
TF CalR - Shewanellaceae Utilization of aromatic compounds TetR 16 16
TF UxaR - Thermotogales Galacturonate utilization, Pectin utilization GntR/Others 11 18
TF UgpR - Thermotogales Possibly alpha-mannosides utilization LacI 11 9
TF TM1030 - Thermotogales Multidrug resistance TetR 11 6
TF IolR - Thermotogales Inositol utilization ROK 11 4
TF GloR - Thermotogales Fucose-glucose oligosaccharide utilization LacI 11 8
TF YtrA - Staphylococcaceae Hypothetical ABC transporter GntR/Others 7 8
TF IcaR - Staphylococcaceae Intercellular adhesion TetR 7 4
TF Cg1211 - Corynebacteriaceae Metabolite transport MarR 8 12
TF LiuR - Ralstonia Branched-chain amino acid degradation MerR 6 57
TF AgrA - Staphylococcaceae Quorum sensing, Virulence LytTR 7 7
TF SO3277 - Shewanellaceae Multidrug resistance TetR 16 64
TF SO3393 - Shewanellaceae Drug resistance TetR 16 78
TF SO3494 - Shewanellaceae Multidrug resistance TetR 16 31
TF SO3627 - Shewanellaceae TetR 16 4
TF SO4326 - Shewanellaceae Multidrug resistance TetR 16 8
TF SO4468 - Shewanellaceae TetR 16 22
TF SO4705 - Shewanellaceae XRE 16 32
TF CooA - Desulfovibrionales Carbon monoxide utilization CRP 10 8
TF Dde_1200 - Desulfovibrionales CRP 10 2
TF DVU0030 - Desulfovibrionales Amino acid transport GntR/MocR 10 17
TF DVU0379 - Desulfovibrionales Uranium reduction CRP 10 3
TF DVU2423 - Desulfovibrionales Nitrogen metabolism HxlR 10 9
TF DVU2644 - Desulfovibrionales Amino acid metabolism GntR/Others 10 11
TF ArsR2 - Desulfovibrionales Arsenic resistance ArsR 10 5
TF DVU2802 - Desulfovibrionales GntR/Others 10 8
TF DVU3111 - Desulfovibrionales Alkaline stress response CRP 10 3
TF FliA - Desulfovibrionales Motility Sigma70 10 64
TF LysX - Desulfovibrionales Lysine biosynthesis TrmB 10 11
TF PerR - Desulfovibrionales Peroxide stress response FUR 10 29
TF PdxR3 - Rhodobacterales Metabolite transport, Pyridoxine/pyridoxal homeostasis GntR/MocR 15 1
TF LiuQ - Ralstonia Branched-chain amino acid degradation TetR 6 14
TF UgtR - Thermotogales Sugar utilization RpiR 11 8
TF FadP - Ralstonia Fatty acid degradation TetR 6 85
TF Ddes_0528, DESPIG_03026 - Desulfovibrionales Nitrosative stress response CRP 10 4
TF MhqR - Bacillales 2-Methylhydroquinone and catechol resistance MarR 11 35
TF CcmR - Cyanobacteria Carbon dioxide fixation LysR 14 72
TF DeoR - Enterobacteriales Deoxyribonucleoside utilization DeoR 12 34
TF YdfD/YisV - Bacillales Metabolite transport GntR/MocR 11 14
TF SmtB - Desulfovibrionales Heavy metal resistance ArsR 10 7
TF MalI - Enterobacteriales Maltose utilization LacI 12 19
TF IolR2 - Bacillales Inositol utilization LacI 11 4
TF YisR - Bacillales Metabolite transport AraC 11 6
TF YwrC - Bacillales Metal homeostasis AsnC 11 5
TF LevR - Bacillales Levan utilization [Other] 11 2
TF BkdR - Bacillales Branched-chain amino acid degradation Fis 11 26
TF GmuR - Bacillales Glucomannan utilization GntR/Others 11 6
TF CcpN - Bacillales Gluconeogenesis CcpN 11 26
TF IolR1 - Bacillales Inositol utilization LacI 11 13
TF DvMF_1708 - Desulfovibrionales CRP 10 3
TF CitR - Bacillales Citrate metabolism LysR 11 8
TF GltR - Bacillales unknown LysR 11 5
TF YtlI - Bacillales L-cystine transporter LysR 11 8
TF YwbI - Bacillales Cell wall metabolism LysR 11 8
TF YdfI - Bacillales Metabolite transport LuxR 11 3
TF YcjW - Listeriaceae Sugar utilization LacI 4 9
TF Arth_2426 - Micrococcineae Sugar utilization LacI 14 12
TF ZnuR - Thermotogales Zinc homeostasis OmpR 11 5
TF YhcF - Bacillales Multidrug efflux, Multidrug resistance GntR/Others 11 6
TF YhcF - Lactobacillaceae Multidrug efflux, Multidrug resistance GntR/Others 15 14
TF Caur_3587 - Chloroflexia ArsR 5 11
TF HpdR - Chloroflexia Tyrosine degradation TrmB 5 3
TF Caur_1779 - Chloroflexia Energy metabolism LysR 5 4
TF AcrR - Chloroflexia Multidrug efflux, Multidrug resistance TetR 5 7
TF Caur_3401 - Chloroflexia Multidrug efflux, Multidrug resistance TetR 5 4
TF BltR - Bacillales Multidrug resistance MerR 11 4
TF RmgR - Bacillales Rhamnogalacturonides utilization AraC 11 10
TF SdhR - Alcaligenaceae Tricarboxylic acid cycle GntR/Others 3 14
TF SdhR - Comamonadaceae Tricarboxylic acid cycle GntR/Others 11 36
TF Vapar_1337 - Comamonadaceae GntR/MocR 11 1
TF BmrR - Bacillales Multidrug resistance MerR 11 2
TF YdfL - Bacillales Multidrug resistance MerR 11 4
TF RhgR - Bacillales Rhamnogalacturonides utilization AraC 11 4
TF DctR - Bacillales C4-dicarboxylate transport OmpR 11 4
TF Ddes_1411/Ddes_2092 - Desulfovibrionales CRP 10 8
TF Desal_2066 - Desulfovibrionales CRP 10 6
TF KipR - Bacillales Sporulation IclR 11 9
TF AdaA - Bacillales DNA alkylation response AraC 11 10
TF Desal_0494 - Desulfovibrionales CRP 10 2
TF GudR - Bacillales Galactarate utilization, Glucarate utilization GntR/Others 11 7
TF DesR - Bacillales Cold shock response LuxR 11 6
TF Ddes_1827 - Desulfovibrionales Nitrosative stress response CRP 10 1
TF UctR - Thermotogales Sugar utilization RpiR 11 5
TF GlcR - Bacillales DeoR 11 7
TF TM0766 - Thermotogales Hypothetical ABC transporter GntR/Others 11 9
TF YczG - Bacillales Utilization of aromatic compounds ArsR 11 8
TF ArsR3 - Desulfovibrionales Arsenic resistance ArsR 10 4
TF Ddes_1264 - Desulfovibrionales Heavy metal resistance ArsR 10 2
TF Dbac_1936 - Desulfovibrionales ArsR 10 1
TF Dbac_0377 - Desulfovibrionales ArsR 10 1
TF DMR_45340 - Desulfovibrionales ArsR 10 2
TF DMR_39480 - Desulfovibrionales ArsR 10 2
TF DESPIG_02495 - Desulfovibrionales ArsR 10 3
TF YfmP - Bacillales Metal efflux MerR 11 7
TF YtcD - Bacillales HxlR 11 10
TF YybR/YdeP - Bacillales Multidrug resistance HxlR 11 21
TF YdfF - Bacillales ArsR 11 10
TF YybA - Bacillales Polyamine homeostasis MarR 11 25
TF YhgD - Bacillales TetR 11 17
TF CD1503 - Clostridia-2 Multidrug efflux, Multidrug resistance GntR/Others 3 3
TF ABC1167 - Bacillales Sugar utilization LacI 11 2
TF PBPRB0322 - Vibrionales Metabolite transport GntR/MocR 10 8
TF PirR - Cyanobacteria Salt stress response LysR 14 11
TF NifA - Sphingomonadales Nitrogen fixation Fis 7 6
TF NadQ - Moraxellaceae NAD biosynthesis NadQ 4 6
TF NadQ - Comamonadaceae NAD biosynthesis NadQ 11 6
TF NadQ - Various betaproteobacteria NAD biosynthesis NadQ 12 2
TF NadQ - Rhizobiales NAD biosynthesis NadQ 15 22
TF NadQ - Rhodobacterales NAD biosynthesis NadQ 15 5
TF NadQ - Rhodospirillales NAD biosynthesis NadQ 9 10
TF NadQ - Caulobacterales NAD biosynthesis NadQ 4 16
RNA ylbH - Bacillales RF00516 11 10
RNA yybP-ykoY - Shewanellaceae RF00080 16 19
RNA yybP-ykoY - Staphylococcaceae RF00080 7 7
RNA yybP-ykoY - Thermotogales RF00080 11 1
RNA yybP-ykoY - Bacillales RF00080 11 16
RNA yybP-ykoY - Desulfovibrionales RF00080 10 7
RNA yybP-ykoY - Ralstonia RF00080 6 8
RNA yybP-ykoY - Enterobacteriales RF00080 12 21
RNA yybP-ykoY - Cyanobacteria RF00080 14 4
RNA yybP-ykoY - Corynebacteriaceae RF00080 8 10
RNA ydaO-yuaA - Bacillales Cell wall metabolism, Osmotic stress response RF00379 11 18
RNA ydaO-yuaA - Desulfovibrionales Cell wall metabolism, Osmotic stress response RF00379 10 1
RNA ydaO-yuaA - Cyanobacteria Cell wall metabolism, Osmotic stress response RF00379 14 8
RNA ydaO-yuaA - Corynebacteriaceae Cell wall metabolism RF00379 8 5
RNA ykkC-yxkD - Staphylococcaceae Multidrug resistance RF00442 7 1
RNA ykkC-yxkD - Bacillales Multidrug resistance RF00442 11 11
RNA ykkC-yxkD - Ralstonia Multidrug resistance RF00442 6 2
RNA ykkC-yxkD - Enterobacteriales Multidrug resistance RF00442 12 1
RNA ykkC-yxkD - Cyanobacteria Multidrug resistance RF00442 14 6
TF DVU1964/DVU1967 - Desulfovibrionales Rrf2 10 16
RNA mini-ykkC - Shewanellaceae Multidrug resistance RF01068 16 7
RNA mini-ykkC - Desulfovibrionales Multidrug resistance RF01068 10 1
RNA mini-ykkC - Ralstonia Multidrug resistance RF01068 6 2
RNA mini-ykkC - Enterobacteriales Multidrug resistance RF01068 12 10
RNA mini-ykkC - Cyanobacteria Multidrug resistance RF01068 14 1
RNA sucA - Ralstonia Tricarboxylic acid cycle RF01070 6 6
RNA His_leader - Shewanellaceae Histidine biosynthesis RF00514 16 16
RNA His_leader - Thermotogales Histidine biosynthesis RF00514 11 1
RNA His_leader - Enterobacteriales Histidine biosynthesis RF00514 12 12
RNA L10_leader - Staphylococcaceae Ribosome biogenesis RF00557 7 7
RNA L10_leader - Thermotogales Ribosome biogenesis RF00557 11 11
RNA L10_leader - Bacillales Ribosome biogenesis RF00557 11 11
RNA L10_leader - Cyanobacteria Ribosome biogenesis RF00557 14 11
RNA L10_leader - Corynebacteriaceae Ribosome biogenesis RF00557 8 3
RNA L13_leader - Staphylococcaceae Ribosome biogenesis RF00555 7 7
RNA L13_leader - Bacillales Ribosome biogenesis RF00555 11 8
RNA L19_leader - Staphylococcaceae Ribosome biogenesis RF00556 7 7
RNA L19_leader - Bacillales Ribosome biogenesis RF00556 11 10
RNA L20_leader - Staphylococcaceae Ribosome biogenesis RF00558 7 7
RNA L20_leader - Thermotogales Ribosome biogenesis RF00558 11 10
RNA L20_leader - Bacillales Ribosome biogenesis RF00558 11 9
RNA L21_leader - Staphylococcaceae Ribosome biogenesis RF00559 7 6
RNA L21_leader - Thermotogales Ribosome biogenesis RF00559 11 4
RNA L21_leader - Bacillales Ribosome biogenesis RF00559 11 11
RNA L21_leader - Cyanobacteria Ribosome biogenesis RF00559 14 1
RNA Leu_leader - Shewanellaceae Branched-chain amino acid biosynthesis RF00512 16 16
RNA Leu_leader - Enterobacteriales Branched-chain amino acid biosynthesis RF00512 12 12
RNA S15 - Shewanellaceae Ribosome biogenesis RF00114 16 16
RNA S15 - Enterobacteriales Ribosome biogenesis RF00114 12 12
RNA S15 - Corynebacteriaceae Ribosome biogenesis RF00114 8 7
RNA Thr_leader - Shewanellaceae Threonine biosynthesis RF00506 16 16
RNA Thr_leader - Enterobacteriales Threonine biosynthesis RF00506 12 12
RNA Trp_leader - Shewanellaceae Tryptophan biosynthesis RF00513 16 16
RNA Trp_leader - Thermotogales Tryptophan biosynthesis RF00513 11 3
RNA Trp_leader - Enterobacteriales Tryptophan biosynthesis RF00513 12 12
RNA Trp_leader - Corynebacteriaceae Tryptophan biosynthesis RF00513 8 3
TF LiuR - Vibrionales Branched-chain amino acid degradation MerR 10 38
TF LiuR - Alteromonadales Branched-chain amino acid degradation MerR 9 65
TF LiuR - Psychromonadaceae/Aeromonadales Branched-chain amino acid degradation MerR 6 20
TF LiuR - Oceanospirillales/Alteromonadales Branched-chain amino acid degradation MerR 12 28
TF LiuR - Pseudomonadaceae Branched-chain amino acid degradation MerR 8 32
TF LiuR - Burkholderia Branched-chain amino acid degradation MerR 8 6
TF LiuR - Comamonadaceae Branched-chain amino acid degradation MerR 11 59
TF LiuR - Various betaproteobacteria Branched-chain amino acid degradation MerR 12 31
TF LiuR - Rhizobiales Branched-chain amino acid degradation MerR 15 84
TF LiuR - Rhodobacterales Branched-chain amino acid degradation MerR 15 19
TF LiuR - Rhodospirillales Branched-chain amino acid degradation MerR 9 17
TF LiuR - Sphingomonadales Branched-chain amino acid degradation MerR 7 65
TF LiuR - Caulobacterales Branched-chain amino acid degradation MerR 4 14
TF NifA - Rhizobiales Nitrogen fixation Fis 15 130
TF LiuR2 - Comamonadaceae Acyclic terpenes degradation MerR 11 2
TF QorR - Enterobacteriales Energy metabolism HxlR 12 15
RNA L10_leader - Lactobacillaceae Ribosome biogenesis RF00557 15 15
RNA L10_leader - Streptococcaceae Ribosome biogenesis RF00557 15 15
TF OhcR - Desulfovibrionales Energy metabolism Fis 10 10
TF HmcR - Desulfovibrionales Energy metabolism Rrf2 10 12
TF TmcR - Desulfovibrionales Energy metabolism Rrf2 10 6
RNA L13_leader - Lactobacillaceae Ribosome biogenesis RF00555 15 13
RNA L13_leader - Streptococcaceae Ribosome biogenesis RF00555 15 15
RNA L19_leader - Lactobacillaceae Ribosome biogenesis RF00556 15 14
RNA L19_leader - Streptococcaceae Ribosome biogenesis RF00556 15 13
RNA L20_leader - Lactobacillaceae Ribosome biogenesis RF00558 15 15
RNA L20_leader - Streptococcaceae Ribosome biogenesis RF00558 15 15
RNA L21_leader - Lactobacillaceae Ribosome biogenesis RF00559 15 15
RNA L21_leader - Streptococcaceae Ribosome biogenesis RF00559 15 15
RNA S15 - Lactobacillaceae Ribosome biogenesis RF00114 15 9
RNA S15 - Streptococcaceae Ribosome biogenesis RF00114 15 15
RNA ykkC-yxkD - Lactobacillaceae Multidrug resistance RF00442 15 2
RNA yybP-ykoY - Lactobacillaceae RF00080 15 13
RNA yybP-ykoY - Streptococcaceae RF00080 15 15
TF AgaR - Clostridia-1 N-acetylgalactosamine utilization GntR/Others 8 19
TF YvbF/YvaV - Bacillales Osmotic stress response MarR 11 12
TF FadP - Burkholderia Fatty acid degradation TetR 8 63
TF FadP - Comamonadaceae Fatty acid degradation TetR 11 46
TF LiuQ - Burkholderia Branched-chain amino acid degradation TetR 8 32
TF LiuQ - Comamonadaceae Branched-chain amino acid degradation TetR 11 8
TF PhnF - Ralstonia Phosphonate utilization GntR/Others 6 8
TF PhnF - Enterobacteriales Phosphonate utilization GntR/Others 12 6
TF PhnF - Psychromonadaceae/Aeromonadales Phosphonate utilization GntR/Others 6 1
TF PhnF - Oceanospirillales/Alteromonadales Phosphonate utilization GntR/Others 12 4
TF PhnF - Pseudomonadaceae Phosphonate utilization GntR/Others 8 3
TF PhnF - Burkholderia Phosphonate utilization GntR/Others 8 15
TF PhnF - Comamonadaceae Phosphonate utilization GntR/Others 11 2
TF PhnF - Various betaproteobacteria Phosphonate utilization GntR/Others 12 4
TF PhnF - Rhizobiales Phosphonate utilization GntR/Others 15 24
TF PhnF - Rhodobacterales Phosphonate utilization GntR/Others 15 23
TF PhnR - Vibrionales 2-aminoethylphosphonate utilization, Phosphonate utilization GntR/Others 10 48
TF PhnR - Psychromonadaceae/Aeromonadales 2-aminoethylphosphonate utilization, Phosphonate utilization GntR/Others 6 16
TF PhnR - Oceanospirillales/Alteromonadales 2-aminoethylphosphonate utilization, Phosphonate utilization GntR/Others 12 6
TF PhnR - Pseudomonadaceae 2-aminoethylphosphonate utilization, Phosphonate utilization GntR/Others 8 30
TF PhnR - Moraxellaceae 2-aminoethylphosphonate utilization, Phosphonate utilization GntR/Others 4 2
TF PhnR - Caulobacterales 2-aminoethylphosphonate utilization, Phosphonate utilization GntR/Others 4 9
TF HrsM - Desulfovibrionales LysR 10 16
TF DVU2275 - Desulfovibrionales Pyruvate metabolism Fis 10 6
TF DVU2827 - Desulfovibrionales Pyruvate metabolism Fis 10 26
TF DVU0057 - Desulfovibrionales TetR 10 3
TF DVU0436 - Desulfovibrionales TetR 10 2
TF DVU1760 - Desulfovibrionales TetR 10 4
RNA L10_leader - Clostridiaceae Ribosome biogenesis RF00557 20 19
RNA L10_leader - Chloroflexia Ribosome biogenesis RF00557 5 5
RNA L19_leader - Clostridiaceae Ribosome biogenesis RF00556 20 17
RNA L20_leader - Clostridiaceae Ribosome biogenesis RF00558 20 19
RNA L21_leader - Clostridiaceae Ribosome biogenesis RF00559 20 15
RNA S15 - Clostridiaceae Ribosome biogenesis RF00114 20 3
RNA ydaO-yuaA - Clostridiaceae Cell wall metabolism, Osmotic stress response RF00379 20 18
RNA ykkC-yxkD - Clostridiaceae Multidrug resistance RF00442 20 11
RNA yybP-ykoY - Clostridiaceae RF00080 20 35
RNA yybP-ykoY - Chloroflexia RF00080 5 5
TF DVU2819 - Desulfovibrionales Metabolite transport TetR 10 1
TF Dbac_0104 - Desulfovibrionales Metabolite transport TetR 10 6
TF DvMF_1479 - Desulfovibrionales Amino acid transport GntR/Others 10 1
TF DvMF_2930 - Desulfovibrionales GntR/Others 10 2
TF Desal_0038 - Desulfovibrionales Carbohydrate metabolism GntR/Others 10 1
TF DMR_17410 - Desulfovibrionales Metabolite transport GntR/Others 10 2
TF Desal_2919 - Desulfovibrionales Hypothetical ABC transporter GntR/Others 10 2
TF DvMF_1994 - Desulfovibrionales Carbohydrate metabolism GntR/Others 10 4
TF PhnF - Desulfovibrionales Phosphonate utilization GntR/Others 10 5
TF Desal_3745 - Desulfovibrionales Metabolite transport GntR/Others 10 2
TF PflR - Streptococcaceae Formate metabolism DeoR 15 28
RNA mini-ykkC - Rhodobacterales Multidrug resistance RF01068 15 10
TF PflR - Lactobacillaceae Formate metabolism DeoR 15 3
TF PipR - Streptococcaceae Phage infection protein TetR 15 48
TF YjdR - Streptococcaceae Multidrug resistance MarR 15 21
TF SPy1285 - Streptococcaceae Transport GntR/Others 15 31
TF FasR - Corynebacteriaceae Fatty acid biosynthesis TetR 8 12
TF Cg1831 - Corynebacteriaceae Iron homeostasis ArsR 8 4
TF QacR - Corynebacteriaceae Drug resistance TetR 8 5
TF YybA - Lactobacillaceae unknown MarR 15 2
RNA mini-ykkC - Rhizobiales Multidrug resistance RF01068 15 12
RNA serC - Rhizobiales Serine biosynthesis RF00517 15 14
RNA speF - Rhizobiales Ornithine degradation RF00518 15 12
RNA yybP-ykoY - Rhizobiales RF00080 15 3
RNA ykkC-yxkD - Rhizobiales Multidrug resistance RF00442 15 7
RNA Trp_leader - Rhizobiales Tryptophan biosynthesis RF00513 15 5
RNA ybhL - Rhizobiales RF00520 15 8
TF Rgg - Streptococcaceae Cell wall metabolism XRE 15 10
TF Cg0454 - Corynebacteriaceae Multidrug resistance TetR 8 19
TF PcaR - Corynebacteriaceae Protocatechuate degradation IclR 8 8
TF Cg1053 - Corynebacteriaceae Multidrug resistance TetR 8 5
TF DVU0309 - Desulfovibrionales LysR 10 14
TF Cg0979 - Corynebacteriaceae Lipoprotein export PadR 8 3
RNA yybP-ykoY - Deinococcus-Thermus RF00080 5 5
RNA L10_leader - Deinococcus-Thermus Ribosome biogenesis RF00557 5 4
RNA ykkC-yxkD - Mycobacteriaceae Multidrug resistance RF00442 9 3
RNA ydaO-yuaA - Mycobacteriaceae Cell wall metabolism, Osmotic stress response RF00379 9 9
RNA yybP-ykoY - Mycobacteriaceae RF00080 9 13
RNA L10_leader - Mycobacteriaceae Ribosome biogenesis RF00557 9 1
RNA mini-ykkC - Vibrionales Multidrug resistance RF01068 10 3
RNA Trp_leader - Vibrionales Tryptophan biosynthesis RF00513 10 10
RNA yybP-ykoY - Vibrionales RF00080 10 22
RNA L10_leader - Vibrionales Ribosome biogenesis RF00557 10 3
RNA Leu_leader - Vibrionales Branched-chain amino acid biosynthesis RF00512 10 10
RNA S15 - Vibrionales Ribosome biogenesis RF00114 10 9
RNA Thr_leader - Vibrionales Threonine biosynthesis RF00506 10 10
RNA His_leader - Vibrionales Histidine biosynthesis RF00514 10 10
RNA L10_leader - Pasteurellales Ribosome biogenesis RF00557 9 3
RNA Leu_leader - Pasteurellales Branched-chain amino acid biosynthesis RF00512 9 5
RNA His_leader - Pasteurellales Histidine biosynthesis RF00514 9 9
RNA S15 - Pasteurellales Ribosome biogenesis RF00114 9 10
RNA Thr_leader - Pasteurellales Threonine biosynthesis RF00506 9 7
RNA yybP-ykoY - Pseudomonadaceae RF00080 8 11
RNA mini-ykkC - Pseudomonadaceae Multidrug resistance RF01068 8 8
RNA ykkC-yxkD - Pseudomonadaceae Multidrug resistance RF00442 8 6
RNA S15 - Pseudomonadaceae Ribosome biogenesis RF00114 8 8
TF YbzH - Bacillales Metabolite transport ArsR 11 8
TF QorR - Corynebacteriaceae Energy metabolism HxlR 8 2
TF YrkD - Bacillales Multidrug resistance CsoR 11 39
TF DVU0539/DVU0946 - Desulfovibrionales Fis 10 30
TF Cg3239 - Corynebacteriaceae Metabolite transport LysR 8 8
TF CcpB - Lactobacillaceae unknown LacI 15 4
RNA yybP-ykoY - Rhodobacterales RF00080 15 1
RNA S15 - Rhodobacterales Ribosome biogenesis RF00114 15 9
RNA serC - Rhodobacterales Serine biosynthesis RF00517 15 14
RNA ykkC-yxkD - Rhodobacterales Multidrug resistance RF00442 15 3
RNA serC - Caulobacterales Serine biosynthesis RF00517 4 4
RNA yybP-ykoY - Caulobacterales RF00080 4 4
RNA mini-ykkC - Caulobacterales Multidrug resistance RF01068 4 4
RNA ykkC-yxkD - Burkholderia Multidrug resistance RF00442 8 5
RNA yybP-ykoY - Burkholderia RF00080 8 12
RNA mini-ykkC - Burkholderia Multidrug resistance RF01068 8 9
RNA sucA - Burkholderia Tricarboxylic acid cycle RF01070 8 8
TF Cagg_3094 - Chloroflexia Creatinine utilization GntR/Others 5 9
TF Cagg_1084 - Chloroflexia GntR/Others 5 4
TF Rcas_2304 - Chloroflexia Amino acid utilization GntR/Others 5 2
TF Rcas_3562 - Chloroflexia Alpha-galactosides utilization GntR/Others 5 2
TF BfrR - Lactobacillaceae Fructooligosaccharides utilization LacI 15 1
TF BfrR - Streptococcaceae Fructooligosaccharides utilization LacI 15 7
TF OglR2 - Lactobacillaceae Oligoglucoside utilization LacI 15 1
TF DVUA0143 - Desulfovibrionales Nitrogen fixation Fis 10 22
TF SAG1808 - Streptococcaceae Sugar utilization LacI 15 3
TF LSEI_0368 - Lactobacillaceae Sugar utilization LacI 15 8
TF HxlR - Lactobacillaceae Hexulose metabolism LacI 15 4
TF LJ1265 - Lactobacillaceae Pentose utilization LacI 15 4
TF LBA1472 - Lactobacillaceae Sugar utilization LacI 15 4
TF SAG1910 - Streptococcaceae unknown MarR 15 24
TF Sde_3525 - Oceanospirillales/Alteromonadales Multidrug efflux, Multidrug resistance GntR/Others 12 1
TF PCNPT3_10213 - Psychromonadaceae/Aeromonadales Multidrug efflux, Multidrug resistance GntR/Others 6 1
TF LACR_0766 - Streptococcaceae Sugar utilization LacI 15 3
TF CcpN - Streptococcaceae Gluconeogenesis CcpN 15 7
TF CcpN - Lactobacillaceae Gluconeogenesis CcpN 15 6
TF DVU0569 - Desulfovibrionales Amino acid metabolism Fis 10 17
TF DVU2106 - Desulfovibrionales Nitrogen fixation Fis 10 9
TF DVU2359 - Desulfovibrionales Fis 10 9
TF PdxR3 - Micrococcineae Pyridoxine/pyridoxal homeostasis GntR/MocR 14 7
TF Crp - Bacteroidaceae CRP 11 113
TF DVU0619 - Desulfovibrionales Fis 10 9
TF DVUA0100 - Desulfovibrionales Fis 10 18
TF LytT - Bacillales Penicillin resistance LytTR 11 9
TF UxuR - Lactobacillaceae Galacturonate utilization, Glucuronate utilization GntR/Others 15 3
TF YbfI - Bacillales Drug resistance AraC 11 3
TF HTCS_Rgu-2 - Bacteroidaceae Rhamnogalacturonides utilization [Other] 11 39
TF PdxR3 - Mycobacteriaceae Pyridoxine/pyridoxal homeostasis GntR/MocR 9 6
TF PdxR3 - Frankineae/Propionibacterineae/Pseudonocardiaceae Pyridoxine biosynthesis GntR/MocR 9 3
TF SusR - Bacteroidaceae Starch utilization [Other] 11 18
TF SusR2 - Bacteroidaceae Starch utilization [Other] 11 10
TF Lp_2742 - Lactobacillaceae Multidrug efflux, Multidrug resistance GntR/Others 15 8
TF YtrA - Lactobacillaceae Hypothetical ABC transporter GntR/Others 15 8
TF YwzG - Lactobacillaceae Transport PadR 15 6
TF YwzG - Streptococcaceae Transport PadR 15 15
TF RpiR - Lactobacillaceae Sugar utilization RpiR 15 7
TF CzcR1 - Lactobacillaceae Cadmium resistance, Cobalt resistance, Zinc resistance ArsR 15 10
TF CzcR2 - Lactobacillaceae Cadmium resistance, Cobalt resistance, Zinc resistance ArsR 15 7
TF NihR - Lactobacillaceae Nickel homeostasis CRP 15 10
TF LBA0573 - Lactobacillaceae Multidrug resistance MarR 15 7
TF AguR - Lactobacillaceae Agmatine utilization RpiR 15 3
TF YxeR - Lactobacillaceae Antibiotic resistance TetR 15 20
TF YxeR - Streptococcaceae Antibiotic resistance TetR 15 2
TF LBA1638 - Lactobacillaceae Transport TetR 15 4
TF LSEI_0081 - Lactobacillaceae Transport TetR 15 7
TF FlrR - Lactobacillaceae Drug resistance TetR 15 6
TF FlrR - Streptococcaceae Drug resistance TetR 15 3
RNA SAM-Chlorobi - Chlorobiales Methionine metabolism RF01724 11 11
TF TauR2 - Rhizobiales GntR/MocR 15 3
TF DVUA0057 - Desulfovibrionales Biofilm formation Fis 10 29
TF Dbac_2821 - Desulfovibrionales GntR/Others 10 3
TF SusR3 - Bacteroidaceae Polysaccharides utilization [Other] 11 4
TF SusR4 - Bacteroidaceae Polysaccharides utilization [Other] 11 4
TF Caur_3448 - Chloroflexia Sugar utilization LacI 5 9
TF CPS_0449 - Alteromonadales Multidrug efflux, Multidrug resistance GntR/Others 9 2
TF PSPTO1352 - Pseudomonadaceae GntR/Others 8 2
TF TunR2 - Desulfovibrionales Metabolite transport, Molybdenum homeostasis TunR 10 12
TF NagR - Clostridia-1 N-acetylglucosamine utilization GntR/Others 8 3
TF LtbR - Bifidobacteriaceae Leucine biosynthesis IclR 10 19
TF BC3039 - Bacillales Metabolite transport GntR/MocR 11 4
RNA TPP - Alteromonadales RF00059 9 13
TF DVU0525 - Desulfovibrionales Multidrug resistance MarR 10 6
TF TauR2 - Rhodobacterales GntR/MocR 15 4
TF NifA-1 - Desulfovibrionales Nitrogen assimilation Fis 10 101
TF DVU2894 - Desulfovibrionales Motility Fis 10 27
TF DVU0151 - Desulfovibrionales Metabolite transport Fis 10 9
TF DVU1419 - Desulfovibrionales Fis 10 11
TF DVU2114 - Desulfovibrionales Fis 10 18
TF DVU2394 - Desulfovibrionales Energy metabolism Fis 10 15
TF DVU2934 - Desulfovibrionales Fis 10 20
TF DVU3305 - Desulfovibrionales Fis 10 20
TF LfaR - Enterobacteriales Sugar utilization LacI 12 23
TF DVU0118 - Desulfovibrionales Fis 10 2
TF RL3595 - Rhizobiales Sugar utilization LacI 15 8
TF OB2597_06045 - Rhodobacterales Sugar utilization LacI 15 2
TF PckR - Rhizobiales Central carbohydrate metabolism LacI 15 99
TF SocR - Rhodobacterales Santhopine utilization LacI 15 1
TF SMb20537 - Rhizobiales Sugar utilization LacI 15 10
TF SMb20667 - Rhizobiales Sugar utilization LacI 15 29
TF RpoN - Desulfovibrionales Cell wall metabolism, Intercellular adhesion, Metabolite transport, Motility, Nitrogen metabolism, Zinc homeostasis Sigma54 10 487
TF DVU1063 - Desulfovibrionales Motility Fis 10 86
TF SMb21598 - Rhizobiales Sugar utilization LacI 15 13
TF OG2516_10476 - Rhodobacterales Sugar utilization LacI 15 4
TF SMb21706 - Rhizobiales Sugar utilization LacI 15 15
TF SMc04260 - Rhizobiales Sugar utilization LacI 15 15
TF RL4253 - Rhizobiales Sugar utilization LacI 15 11
TF Jann_3936 - Rhodobacterales Sugar utilization LacI 15 4
TF SMb20717 - Rhizobiales Sugar utilization LacI 15 16
TF Jann_1459 - Rhodobacterales Sugar utilization LacI 15 10
TF CC1627 - Caulobacterales Sugar utilization LacI 4 14
TF Phr - Methanobacteriales Heat shock response ArsR 5 14
TF IolR - Micrococcineae Inositol utilization LacI 14 6
TF IolR2 - Corynebacteriaceae Inositol utilization LacI 8 2
TF PFL_0254 - Pseudomonadaceae Sugar utilization LacI 8 4
TF Bphy_4590 - Burkholderia Sugar utilization LacI 8 10
TF PSPTO0485 - Pseudomonadaceae Sugar utilization LacI 8 1
TF XCC2209 - Xanthomonadales Sugar utilization LacI 4 22
TF LndYR - Micrococcineae Antibiotic resistance GntR/Others 14 2
TF Bamb_4155 - Burkholderia Sugar utilization LacI 8 3
TF XCC4129 - Xanthomonadales Sugar utilization LacI 4 2
TF Rmet_4647 - Ralstonia LacI 6 4
TF SCO4158 - Streptomycetaceae Nucleoside utilization LacI 4 12
TF STM1555 - Enterobacteriales Sugar utilization LacI 12 4
TF IolR - Thermoanaerobacterales Inositol utilization LacI 7 7
TF Lmo0031 - Listeriaceae Sugar utilization LacI 4 8
TF MalI - Vibrionales Maltose utilization LacI 10 15
TF Bamb_2736 - Burkholderia Sugar utilization LacI 8 4
TF SCO5692 - Streptomycetaceae Sugar utilization LacI 4 13
TF VF_1255 - Vibrionales Sugar utilization LacI 10 5
TF YcjW - Enterobacteriales Sugar utilization LacI 12 4
TF Bphy_6994 - Burkholderia NULL LacI 8 2
TF SCO1956 - Streptomycetaceae Sugar utilization LacI 4 2
TF Bphy_2245 - Burkholderia Sugar utilization LacI 8 2
TF UxuR - Bacillales Glucuronate utilization LacI 11 12
TF BH1250 - Bacillales Sugar utilization LacI 11 9
TF DR2501 - Deinococcus-Thermus Sugar utilization LacI 5 8
TF BH1516 - Bacillales Maltose utilization LacI 11 6
TF RSc1790 - Ralstonia Sugar utilization LacI 6 5
TF Csac_2166 - Thermoanaerobacterales Multidrug efflux, Multidrug resistance GntR/Others 7 5
TF YtrA - Clostridia-1 Antibiotic resistance, Multidrug efflux, Multidrug resistance GntR/Others 8 5
TF AnsR - Nocardiaceae Asparagine degradation, Aspartate utilization GntR/Others 4 12
TF AAur_3503 - Micrococcineae Sugar utilization LacI 14 4
TF AnsR - Micrococcineae Asparagine degradation, Aspartate utilization GntR/Others 14 5
TF CJA_2253 - Oceanospirillales/Alteromonadales Alkanesulfonates utilization GntR/Others 12 1
TF Mce2R - Nocardiaceae Fatty acid metabolism GntR/Others 4 6
TF AnsR - Streptomycetaceae Asparagine degradation, Aspartate utilization GntR/Others 4 2
TF AAur_2567 - Micrococcineae Multidrug efflux, Multidrug resistance GntR/Others 14 9
TF Cg3261 - Corynebacteriaceae Multidrug efflux, Multidrug resistance GntR/Others 8 8
TF Nfa3720 - Nocardiaceae Multidrug efflux, Multidrug resistance GntR/Others 4 3
TF SPO0590 - Rhodobacterales Sugar utilization LacI 15 21
TF PdxW - Streptomycetaceae Pyridoxine/pyridoxal homeostasis GntR/MocR 4 17
TF Mce2R - Frankineae/Propionibacterineae/Pseudonocardiaceae Fatty acid metabolism GntR/Others 9 1
TF PA2299 - Pseudomonadaceae Alkanesulfonates utilization GntR/Others 8 3
TF EF1676 - Enterococcaceae Multidrug efflux, Multidrug resistance GntR/Others 2 1
TF CBO1205 - Clostridia-1 Macrolides efflux, Multidrug efflux GntR/Others 8 3
TF RhmR - Chloroflexia Rhamnose oligosaccharides utilization LacI 5 1
TF XAC1548 - Xanthomonadales Multidrug efflux, Multidrug resistance GntR/Others 4 6
TF THA_1503 - Thermotogales Multidrug efflux, Multidrug resistance GntR/Others 11 6
TF RER_29210 - Nocardiaceae Multidrug efflux GntR/Others 4 3
TF Bcav_0107 - Micrococcineae Multidrug efflux GntR/Others 14 2
TF Svir_39240 - Frankineae/Propionibacterineae/Pseudonocardiaceae Multidrug efflux, Multidrug resistance GntR/Others 9 2
TF YtrA - Listeriaceae Multidrug efflux, Multidrug resistance GntR/Others 4 4
TF Atu2740 - Rhizobiales Sugar utilization GntR/Others 15 6
TF AAur_4078 - Micrococcineae Galactosides utilization LacI 14 21
TF EF1410 - Enterococcaceae Sugar utilization LacI 2 2
TF BH0651 - Bacillales Multidrug efflux, Multidrug resistance GntR/Others 11 9
TF BioR - Rhizobiales Biotin biosynthesis GntR/Others 15 16
TF Cg0646 - Corynebacteriaceae IclR 8 2
TF BioR - Rhodobacterales Biotin biosynthesis GntR/Others 15 18
TF Phr - Thermococcales Heat shock response ArsR 7 87
TF Phr - Archaeoglobales Heat shock response ArsR 3 6
TF Phr - Methanomicrobiales Heat shock response ArsR 5 11
TF PdxR3 - Nocardiaceae Pyridoxine/pyridoxal homeostasis GntR/MocR 4 16
TF PdxR3 - Comamonadaceae Pyridoxine/pyridoxal homeostasis GntR/MocR 11 4
TF SACE_5794 - Frankineae/Propionibacterineae/Pseudonocardiaceae GntR/Others 9 4
TF Sde_0506 - Alteromonadales Sugar utilization LacI 9 6
TF IolR - Streptomycetaceae Inositol utilization LacI 4 8
TF BPSL1304 - Burkholderia Sugar utilization LacI 8 11
TF IolR - Oceanospirillales/Alteromonadales Inositol utilization LacI 12 1
TF MsmR - Micrococcineae Sugar utilization LacI 14 8
TF VCA0673 - Vibrionales LacI 10 9
TF YtrA2 - Staphylococcaceae Antibiotic resistance, Multidrug efflux, Multidrug resistance GntR/Others 7 1
TF VP2396 - Vibrionales Galactosides utilization LacI 10 14
TF SMb20014 - Rhizobiales Sugar utilization LacI 15 5
TF CblR - Thermoproteales Cobalamin biosynthesis 5 9
TF CblR - Sulfolobales Cobalamin biosynthesis 5 28
TF RUMGNA_00848 - Clostridia-3 Multidrug efflux, Multidrug resistance GntR/Others 14 9
TF GabR - Corynebacteriaceae Gamma-aminobutyrate utilization [Other] 8 9
TF HpxS - Enterobacteriales Allantoin utilization GntR/Others 12 6
TF y3436 - Enterobacteriales Sugar utilization LacI 12 2
TF PctR - Corynebacteriaceae Phosphonate utilization RpiR 8 1
TF CD0652 - Clostridia-2 Multidrug efflux, Multidrug resistance GntR/Others 3 5
TF Csac_2497 - Thermoanaerobacterales Multidrug efflux, Multidrug resistance GntR/Others 7 4
TF Cbei_4343 - Clostridia-1 Multidrug efflux, Multidrug resistance GntR/Others 8 7
TF H16_B2241 - Ralstonia Alkanesulfonates utilization GntR/Others 6 3
TF IolR - Rhizobiales Inositol utilization LacI 15 8
TF IolR - Rhodobacterales Inositol utilization LacI 15 13
TF Jann_1107 - Rhodobacterales Sugar utilization LacI 15 5
TF KglR - Rhizobiales Sugar utilization LacI 15 2
TF KglR - Rhodobacterales Sugar utilization LacI 15 1
TF AfrR - Rhizobiales 1,5-Anhydro-d-Fructose utilization LacI 15 19
TF AfrR - Rhodobacterales 1,5-Anhydro-d-Fructose utilization LacI 15 3
TF YhcF - Listeriaceae Multidrug efflux, Multidrug resistance GntR/Others 4 4
TF YhcF - Clostridia-3 Multidrug efflux, Multidrug resistance GntR/Others 14 7
TF YhcF - Clostridia-1 Multidrug efflux, Multidrug resistance GntR/Others 8 10
TF NGR_b22600 - Rhizobiales Sugar utilization LacI 15 4
TF AZL_a08610 - Rhodospirillales Sugar utilization LacI 9 4
TF Chvl - Rhodobacterales OmpR 15 10
TF BC2903 - Bacillales Multidrug efflux, Multidrug resistance GntR/Others 11 8
TF Nfa20840 - Nocardiaceae GntR/Others 4 15
TF Arth_3541 - Micrococcineae GntR/Others 14 14
TF HpxS - Pseudomonadaceae Allantoin utilization GntR/Others 8 1
TF LndYR - Frankineae/Propionibacterineae/Pseudonocardiaceae Antibiotic resistance GntR/Others 9 6
TF VSAK1_25095 - Vibrionales Allantoin utilization, Xanthine utilization GntR/Others 10 25
TF SCO1410 - Streptomycetaceae GntR/Others 4 10
TF Amir_6997 - Frankineae/Propionibacterineae/Pseudonocardiaceae GntR/Others 9 9
TF ROP_32700 - Nocardiaceae GntR/Others 4 8
TF H16_B1761 - Ralstonia GntR/Others 6 5
TF AAur_0050 - Micrococcineae GntR/Others 14 14
TF Aave_3515 - Comamonadaceae GntR/Others 11 15
TF PSPTO5027 - Pseudomonadaceae GntR/Others 8 4
TF PMI3555 - Enterobacteriales GntR/Others 12 8
TF Pden_0318 - Rhodobacterales GntR/Others 15 2
TF Atu3908 - Rhizobiales GntR/Others 15 2
TF Mll1683 - Rhizobiales Sugar utilization LacI 15 16
TF Atu5239 - Rhizobiales LacI 15 5
TF PdxR3 - Streptomycetaceae Pyridoxine/pyridoxal homeostasis GntR/MocR 4 12
TF blr3394 - Rhizobiales Sugar utilization LacI 15 2
TF pRL90265 - Rhizobiales Sugar utilization LacI 15 8
TF BenR - Corynebacteriaceae Benzoate degradation LuxR 8 6
TF IolR - Mycobacteriaceae Inositol utilization GntR/Others 9 13
TF PhnF - Mycobacteriaceae 2-aminoethylphosphonate utilization, Phosphonate utilization GntR/Others 9 20
TF YhcF2 - Bacillales Multidrug efflux, Multidrug resistance GntR/Others 11 9
TF GmuR - Listeriaceae Glucomannan utilization GntR/Others 4 16
TF SACE_6121 - Frankineae/Propionibacterineae/Pseudonocardiaceae Multidrug efflux GntR/Others 9 3
TF PhnF - Nocardiaceae 2-aminoethylphosphonate utilization, Phosphonate utilization GntR/Others 4 18
TF SCO3812 - Streptomycetaceae Multidrug efflux GntR/Others 4 2
TF PhnF - Frankineae/Propionibacterineae/Pseudonocardiaceae Phosphonate utilization GntR/Others 9 2
TF PhnF - Streptomycetaceae 2-aminoethylphosphonate utilization, Phosphonate utilization GntR/Others 4 1
TF ABC3918 - Bacillales GntR/Others 11 3
TF AnsR - Rhizobiales Asparagine degradation, Aspartate utilization GntR/Others 15 6
TF YihL - Enterobacteriales GntR/Others 12 3
TF ELI_12480 - Sphingomonadales Multidrug efflux, Multidrug resistance GntR/Others 7 23
TF PdxW - Mycobacteriaceae Pyridoxine/pyridoxal homeostasis GntR/MocR 9 4
TF SPOA0336 - Rhodobacterales Sugar utilization LacI 15 6
TF Jk1423 - Corynebacteriaceae TetR 8 6
TF SdaR - Pseudomonadaceae Galactarate utilization, Glucarate utilization GntR/Others 8 8
TF SdaR - Comamonadaceae Galactarate utilization, Glucarate utilization GntR/Others 11 1
TF Daci_3836 - Comamonadaceae GntR/Others 11 8
TF BAV2585 - Alcaligenaceae Nitrogen metabolism GntR/Others 3 5
TF Bxe_B1375 - Burkholderia GntR/Others 8 1
TF Spro_1420 - Enterobacteriales Nitrogen metabolism GntR/Others 12 3
TF SdaR - Ralstonia Galactarate utilization, Glucarate utilization, Glucuronate utilization GntR/Others 6 4
TF IolR - Nocardiaceae Inositol utilization GntR/Others 4 21
TF IolR - Micrococcineae Inositol utilization GntR/Others 14 41
TF IolR - Frankineae/Propionibacterineae/Pseudonocardiaceae Inositol utilization GntR/Others 9 30
TF IolR - Corynebacteriaceae Inositol utilization GntR/Others 8 8
TF LtbR - Corynebacteriaceae Leucine biosynthesis, Tryptophan biosynthesis