| AbgR - Enterobacteriales |
p-aminobenzoyl-glutamate utilization |
p-aminobenzoyl-glutamate |
LysR |
12 |
12 |
| AcoR - Bacillales |
Acetoin utilization |
Acetoin |
Fis |
11 |
6 |
| AcrR - Enterobacteriales |
Multidrug resistance |
Rhodamine 6G; Ethidium bromide; Proflavin |
TetR |
12 |
24 |
| AdaA - Bacillales |
DNA alkylation response |
|
AraC |
11 |
10 |
| AdcR - Streptococcus |
Zinc homeostasis |
Zinc ion, (Zn2+) |
MarR |
8 |
59 |
| AgaR - Caulobacterales |
N-acetylgalactosamine utilization |
N-acetylgalactosamine |
DeoR |
4 |
1 |
| AgaR - Enterobacteriales |
N-acetylgalactosamine utilization |
N-acetylgalactosamine; Galactosamine |
DeoR |
12 |
15 |
| AgaR - Pasteurellales |
N-acetylgalactosamine utilization |
N-acetylgalactosamine |
DeoR |
9 |
2 |
| AgaR - Psychromonadaceae/Aeromonadales |
N-acetylgalactosamine utilization |
N-acetylgalactosamine |
DeoR |
6 |
11 |
| AgaR - Shewanellaceae |
N-acetylgalactosamine utilization |
N-acetylgalactosamine |
DeoR |
16 |
10 |
| AgaR - Xanthomonadales |
N-acetylgalactosamine utilization |
N-acetylgalactosamine |
DeoR |
4 |
2 |
| AgaR2 - Enterobacteriales / Vibrionales |
N-acetylgalactosamine utilization |
N-acetylgalactosamine |
DeoR |
5 |
15 |
| AgaR3 - Enterobacteriales / Vibrionales |
N-acetylgalactosamine utilization |
N-acetylgalactosamine |
DeoR |
6 |
7 |
| AgrA - Staphylococcus |
Virulence; Quorum sensing |
|
LytTR |
7 |
7 |
| AlgR - Shewanellaceae |
Alginate utilization |
Glucuronate; Galacturonate |
GntR |
16 |
2 |
| AllR - Enterobacteriales |
Allantoin utilization |
Allantoin |
IclR |
12 |
6 |
| AlsR - Bacillales |
Acetoin production |
Acetate |
LysR |
11 |
8 |
| AnsR - Bacillales |
Asparagine degradation |
Asparagine |
Xre |
11 |
10 |
| AraR - Bacillales |
Arabinose utilization |
Arabinose |
GntR |
11 |
54 |
| AraR - Lactobacillales |
Arabinose utilization |
Arabinose |
GntR |
16 |
19 |
| AraR - Shewanellaceae |
Arabinose utilization |
Arabinose |
GntR |
16 |
30 |
| AraR - Thermotogales |
Arabinose utilization |
Arabinose |
GntR |
11 |
35 |
| AraR1 - Clostridiaceae |
Arabinose utilization |
Arabinose |
GntR |
20 |
12 |
| AraR2 - Clostridiaceae |
Arabinose utilization |
Arabinose |
GntR |
20 |
11 |
| ArcR - Staphylococcus |
Arginine degradation |
Arginine |
Crp |
7 |
6 |
| ArgR - Alteromonadales |
Arginine biosynthesis; Arginine degradation |
Arginine |
ArgR |
9 |
61 |
| ArgR - Bacillales |
Arginine biosynthesis; Arginine degradation |
Arginine |
ArgR |
11 |
83 |
| ArgR - Enterobacteriales |
Arginine biosynthesis; Arginine degradation |
Arginine |
ArgR |
12 |
259 |
| ArgR - Pasteurellales |
Arginine biosynthesis; Arginine degradation |
Arginine |
ArgR |
9 |
69 |
| ArgR - Psychromonadaceae/Aeromonadales |
Arginine biosynthesis; Arginine degradation |
Arginine |
ArgR |
6 |
70 |
| ArgR - Shewanellaceae |
Arginine biosynthesis; Arginine degradation |
Arginine |
ArgR |
16 |
502 |
| ArgR - Staphylococcus |
Arginine biosynthesis; Arginine degradation |
Arginine |
ArgR |
7 |
65 |
| ArgR - Streptococcus |
Arginine biosynthesis; Arginine degradation |
Arginine |
ArgR |
8 |
81 |
| ArgR - Vibrionales |
Arginine biosynthesis; Arginine degradation |
Arginine |
ArgR |
10 |
107 |
| ArsR - Bacillales |
Arsenic resistance |
Arsenite; Cadmium, ion (Cd2+); Silver ion, (Ag+) |
ArsR |
11 |
16 |
| ArsR - Cyanobacteria |
Arsenic resistance |
Arsenite |
ArsR |
14 |
19 |
| ArsR - Desulfovibrionales |
Arsenic resistance |
Arsenate |
ArsR |
11 |
34 |
| ArsR - Staphylococcus |
Arsenic resistance |
Arsenate; Arsenite |
ArsR |
7 |
26 |
| ArsR2 - Desulfovibrionales |
Arsenic resistance |
|
ArsR |
11 |
5 |
| ArsR3 - Desulfovibrionales |
Arsenic resistance |
|
ArsR |
11 |
4 |
| AscG - Enterobacteriales |
Beta-glucosides utilization |
|
LacI |
12 |
28 |
| AseR - Bacillales |
Arsenic resistance |
Arsenite |
ArsR |
11 |
13 |
| AzrR - Shewanellaceae |
Superoxide stress response |
Paraquat |
AsnC |
16 |
34 |
| BceR - Bacillales |
Bacitracin resistance |
BceS, sensor histidine kinase (bacitracin) |
OmpR |
11 |
7 |
| BetI - Enterobacteriales |
Glycine betaine synthesis |
Choline |
TetR |
12 |
14 |
| BetI - Shewanellaceae |
Osmotic stress response |
Betaine |
TetR |
16 |
8 |
| BglR - Bacillales |
Beta-glucosides utilization |
Beta-glucoside-6-phosphate |
GntR |
11 |
6 |
| BglR - Shewanellaceae |
Beta-glucosides utilization |
Beta-glucoside |
LacI |
16 |
24 |
| BglR - Staphylococcus |
Beta-glucosides utilization |
Beta-glucoside-6-phosphate |
GntR |
7 |
2 |
| BglR - Thermotogales |
Beta-glucosides utilization |
Cellobiose |
ROK |
11 |
7 |
| BioQ - Actinomycetales |
Biotin biosynthesis |
Biotin |
TetR |
19 |
86 |
| BioQ - Corynebacteriaceae |
Biotin biosynthesis |
Biotin |
TetR |
8 |
24 |
| BirA - Alteromonadales |
Biotin biosynthesis |
Biotin |
BirA |
9 |
17 |
| BirA - Bacillales |
Biotin biosynthesis |
Biotin |
BirA |
11 |
36 |
| BirA - Desulfovibrionales |
Biotin biosynthesis |
Biotin |
BirA |
13 |
8 |
| BirA - Desulfuromonadales |
Biotin biosynthesis |
Biotin |
BirA |
9 |
15 |
| BirA - Enterobacteriales |
Biotin biosynthesis |
Biotin |
BirA |
12 |
24 |
| BirA - Oceanospirillales/Alteromonadales |
Biotin biosynthesis |
Biotin |
BirA |
12 |
26 |
| BirA - Pseudomonadaceae |
Biotin biosynthesis |
Biotin |
BirA |
8 |
15 |
| BirA - Psychromonadaceae/Aeromonadales |
Biotin biosynthesis |
Biotin |
BirA |
6 |
12 |
| BirA - Shewanellaceae |
Biotin biosynthesis |
Biotin |
BirA |
16 |
32 |
| BirA - Staphylococcus |
Biotin biosynthesis |
Biotin |
BirA |
7 |
21 |
| BirA - Streptococcus |
Biotin biosynthesis |
Biotin |
BirA |
8 |
13 |
| BirA - Various betaproteobacteria |
Biotin biosynthesis |
Biotin |
BirA |
12 |
13 |
| BirA - Vibrionales |
Biotin biosynthesis |
Biotin |
BirA |
10 |
20 |
| BirA - Xanthomonadales |
Biotin biosynthesis |
Biotin |
BirA |
4 |
5 |
| BkdR - Bacillales |
Branched-chain amino acid degradation |
|
Fis |
11 |
26 |
| BlaI - Staphylococcus |
Beta-lactam resistance |
BlaR, sensor histidine kinase (beta-lactam antibiotics) |
MarR |
7 |
16 |
| BlpR - Streptococcus |
Quorum sensing |
|
LytT |
8 |
7 |
| BltR - Bacillales |
Multidrug resistance |
|
MerR |
11 |
5 |
| BmrR - Bacillales |
Multidrug resistance |
|
MerR |
11 |
2 |
| BsdA - Bacillales |
Salicylic acid resistance |
Salicylate |
LysR |
11 |
6 |
| Btr - Bacillales |
Iron homeostasis |
Bacillibactin; Fe-Bacillibactin |
AraC |
11 |
5 |
| CalR - Shewanellaceae |
Utilization of aromatic compounds |
|
TetR |
16 |
16 |
| CcmR - Cyanobacteria |
Carbon dioxide fixation |
|
LysR |
14 |
72 |
| CcpA - Bacillales |
Carbon catabolism |
HPr, phosphocarrier protein |
LacI |
11 |
551 |
| CcpA - Staphylococcus |
Carbon catabolism |
HPr, phosphocarrier protein; Fructose-1,6-diphosphate |
LacI |
7 |
391 |
| CcpA - Streptococcus |
Carbon catabolism |
HPr, phosphocarrier protein |
LacI |
8 |
511 |
| CcpB - Bacillales |
Carbon catabolism |
|
LacI |
11 |
3 |
| CcpC - Bacillales |
Citrate metabolism |
Citrate |
LysR |
11 |
12 |
| CcpN - Bacillales |
Gluconeogenesis |
|
CcpN |
11 |
25 |
| CelR - Thermotogales |
Cellobiose utilization |
Cellobiose |
LacI |
11 |
31 |
| CggR - Bacillales |
Glycolysis |
Fructose-1,6-diphosphate |
SorC |
11 |
12 |
| CggR - Staphylococcus |
Glycolysis |
Fructose-1,6-diphosphate |
SorC |
7 |
7 |
| ChiR - Thermotogales |
Chitobiose utilization |
Chitobiose |
ROK |
11 |
8 |
| CiaR - Streptococcus |
Virulence |
|
OmpR |
8 |
54 |
| CitR - Bacillales |
Citrate metabolism |
|
LysR |
11 |
8 |
| CitT - Bacillales |
Citrate utilization |
Citrate |
CitT |
11 |
8 |
| CmbR - Streptococcus |
Cysteine metabolism |
O-acetyl-L-serine |
LysR |
8 |
18 |
| CodY - Bacillales |
Amino acid metabolism |
Branched-chain amino acids |
CodY |
11 |
411 |
| CodY - Staphylococcus |
Amino acid metabolism |
Branched-chain amino acids |
CodY |
7 |
516 |
| CodY - Streptococcus |
Amino acid metabolism |
Branched-chain amino acids |
CodY |
8 |
143 |
| ComA - Bacillales |
Competence |
ComP, sensor histidine kinase (ComX) |
LuxR |
11 |
17 |
| CooA - Desulfovibrionales |
Carbon monoxide utilization |
|
CRP/FNR |
13 |
11 |
| CopR - Streptococcus |
Copper resistance |
Copper ion, (Cu2+) |
CopY |
8 |
19 |
| Crp - Cyanobacteria |
|
Cyclic 3',5'-AMP |
Fnr-Crp |
14 |
106 |
| Crp - Enterobacteriales |
Carbon catabolism |
Cyclic 3',5'-AMP |
Crp |
12 |
2500 |
| Crp - Shewanellaceae |
Carbon catabolism |
Cyclic 3',5'-AMP |
Crp |
15 |
1260 |
| CsoR - Bacillales |
Copper resistance |
Copper ion, (Cu+) |
CsoR |
11 |
25 |
| CssR - Bacillales |
Protein secretion stress response |
CssS, sensor histidine kinase |
OmpR |
11 |
25 |
| CtsR - Bacillales |
Heat shock response |
Heat shock |
CtsR |
11 |
41 |
| CtsR - Staphylococcus |
Heat shock response |
Heat shock |
CtsR |
7 |
45 |
| CtsR - Streptococcus |
Heat shock response |
Heat shock |
CtsR |
8 |
37 |
| CueR - Enterobacteriales |
Copper homeostasis |
Copper ion, (Cu2+) |
MerR |
12 |
30 |
| CueR - Shewanellaceae |
Copper resistance |
Copper ion, (Cu2+) |
MerR |
16 |
26 |
| CueR2 - Shewanellaceae |
Copper resistance |
Copper ion, (Cu2+) |
MerR |
16 |
3 |
| CymR - Bacillales |
Cysteine metabolism |
O-acetyl-L-serine; CysK, cysteine synthetase |
Rrf2 |
11 |
65 |
| CymR - Staphylococcus |
Cysteine metabolism |
O-acetyl-L-serine; CysK, cysteine synthetase |
Rrf2 |
7 |
69 |
| CysL - Bacillales |
Sulfite reduction |
Sulfate; Sulfite; Thiosulfate |
LysR |
11 |
35 |
| CzrA - Bacillales |
Zinc resistance; Cadmium resistance; Copper resistance; Cobalt resistance; Nickel resistance |
Silver ion, (Ag+); Cadmium, ion (Cd2+); Cobalt ion, (Co2+); Zinc ion, (Zn2+); Nickel ion, (Ni2+); Copper ion, (Cu2+) |
ArsR |
11 |
16 |
| CzrA - Staphylococcus |
Zinc resistance |
Zinc ion, (Zn2+) |
ArsR |
7 |
6 |
| DESPIG_02495 - Desulfovibrionales |
|
|
ArsR |
11 |
3 |
| DMR_17410 - Desulfovibrionales |
Metabolite transport |
|
GntR |
10 |
2 |
| DMR_39480 - Desulfovibrionales |
|
|
ArsR |
11 |
2 |
| DMR_45340 - Desulfovibrionales |
|
|
ArsR |
11 |
2 |
| DVU0030 - Desulfovibrionales |
Amino acid transport |
|
GntR |
13 |
21 |
| DVU0057 - Desulfovibrionales |
|
|
TetR |
10 |
3 |
| DVU0379 - Desulfovibrionales |
Uranium reduction |
|
CRP/FNR |
13 |
5 |
| DVU0436 - Desulfovibrionales |
|
|
TetR |
10 |
2 |
| DVU1760 - Desulfovibrionales |
|
|
TetR |
10 |
4 |
| DVU2275 - Desulfovibrionales |
Pyruvate metabolism |
|
Fis |
10 |
3 |
| DVU2423 - Desulfovibrionales |
Nitrogen metabolism |
|
HxlR |
13 |
13 |
| DVU2644 - Desulfovibrionales |
Amino acid metabolism |
|
GntR |
13 |
17 |
| DVU2802 - Desulfovibrionales |
|
|
GntR |
13 |
9 |
| DVU2819 - Desulfovibrionales |
Metabolite transport |
|
TetR |
10 |
1 |
| DVU2827 - Desulfovibrionales |
Pyruvate metabolism |
|
Fis |
10 |
20 |
| DVU2953 - Desulfovibrionales |
Amino acid metabolism |
|
GntR |
13 |
9 |
| DVU3111 - Desulfovibrionales |
Alkaline stress response |
|
CRP/FNR |
13 |
9 |
| DasR - Streptomyces |
N-acetylglucosamine utilization |
N-acetylglucosamine |
GntR |
2 |
29 |
| Dbac_0104 - Desulfovibrionales |
Metabolite transport |
|
TetR |
10 |
6 |
| Dbac_0377 - Desulfovibrionales |
|
|
ArsR |
11 |
1 |
| Dbac_1936 - Desulfovibrionales |
|
|
ArsR |
11 |
1 |
| DctR - Bacillales |
C4-dicarboxylate transport |
|
DeoR |
11 |
4 |
| Dde_1200 - Desulfovibrionales |
|
|
CRP/FNR |
13 |
2 |
| Ddes_0528, DESPIG_03026 - Desulfovibrionales |
Nitrosative stress response |
|
CRP/FNR |
11 |
4 |
| Ddes_1264 - Desulfovibrionales |
Heavy metal resistance |
|
ArsR |
11 |
2 |
| Ddes_1411, Ddes_2092 - Desulfovibrionales |
|
|
CRP/FNR |
11 |
8 |
| Ddes_1827 - Desulfovibrionales |
Nitrosative stress response |
|
CRP/FNR |
11 |
1 |
| DegA - Bacillales |
Inositol utilization |
|
LacI |
11 |
13 |
| DeoR - Bacillales |
Deoxynucleoside utilization |
Deoxyribose-5-phosphate |
SorC |
11 |
9 |
| DeoR - Enterobacteriales |
Deoxyribonucleoside utilization |
|
DeoR |
12 |
34 |
| DeoR - Shewanellaceae |
Nucleoside utilization |
|
Crp |
16 |
9 |
| DesR - Bacillales |
Cold shock response |
|
LuxR |
11 |
6 |
| Desal_0038 - Desulfovibrionales |
|
|
GntR |
10 |
1 |
| Desal_0494 - Desulfovibrionales |
|
|
CRP/FNR |
11 |
2 |
| Desal_2066 - Desulfovibrionales |
|
|
CRP/FNR |
11 |
6 |
| Desal_2919 - Desulfovibrionales |
|
|
GntR |
10 |
2 |
| Desal_3745 - Desulfovibrionales |
Metabolite transport |
|
GntR |
10 |
2 |
| DgoR - Enterobacteriales |
Galactonate utilization |
Galactonate |
GntR |
12 |
12 |
| Dnr - Ralstonia |
Denitrification |
Nitric oxide |
Fnr |
6 |
9 |
| Dnr - Shewanellaceae |
Denitrification |
Nitric oxide |
Crp |
16 |
5 |
| DosR - Actinomycetales |
Dormancy |
Oxygen; Carbon monoxide; Nitric oxide |
LuxR |
12 |
299 |
| DvMF_1479 - Desulfovibrionales |
|
|
GntR |
10 |
1 |
| DvMF_1708 - Desulfovibrionales |
|
|
CRP/FNR |
11 |
3 |
| DvMF_1994 - Desulfovibrionales |
|
|
GntR |
10 |
4 |
| DvMF_2930 - Desulfovibrionales |
|
|
GntR |
10 |
2 |
| EbgR - Enterobacteriales |
Lactose utilization |
|
LacI |
12 |
5 |
| ExuR - Bacillales |
Glucuronate utilization; Galacturonate utilization |
Glucuronate; Galacturonate |
LacI |
11 |
5 |
| ExuR - Enterobacteriales |
Galacturonate utilization |
Galacturonate |
GntR |
12 |
47 |
| FUR - Shewanellaceae |
Iron homeostasis |
Iron ion, (Fe2+) |
FUR |
16 |
496 |
| FabR - Alteromonadales |
Fatty acid biosynthesis |
Unsaturated acyl-ACP; Unsaturated acyl-CoA |
TetR |
9 |
45 |
| FabR - Enterobacteriales |
Fatty acid biosynthesis |
Unsaturated acyl-ACP; Unsaturated acyl-CoA |
TetR |
12 |
40 |
| FabR - Oceanospirillales/Alteromonadales |
Fatty acid biosynthesis |
Unsaturated acyl-ACP; Unsaturated acyl-CoA |
TetR |
12 |
8 |
| FabR - Pasteurellales |
Fatty acid biosynthesis |
Unsaturated acyl-ACP; Unsaturated acyl-CoA |
TetR |
9 |
19 |
| FabR - Psychromonadaceae/Aeromonadales |
Fatty acid biosynthesis |
Unsaturated acyl-ACP; Unsaturated acyl-CoA |
TetR |
6 |
27 |
| FabR - Shewanellaceae |
Fatty acid biosynthesis |
Unsaturated acyl-ACP; Unsaturated acyl-CoA |
TetR |
16 |
118 |
| FabR - Vibrionales |
Fatty acid biosynthesis |
Unsaturated acyl-ACP; Unsaturated acyl-CoA |
TetR |
10 |
67 |
| FabR/DesT - Pseudomonadaceae |
Fatty acid biosynthesis |
Unsaturated acyl-ACP; Unsaturated acyl-CoA |
TetR |
8 |
13 |
| FabR2 - Moraxellaceae |
Fatty acid biosynthesis |
Unsaturated acyl-ACP; Unsaturated acyl-CoA |
TetR |
4 |
6 |
| FabR2 - Oceanospirillales |
Fatty acid biosynthesis |
Unsaturated acyl-ACP; Unsaturated acyl-CoA |
TetR |
12 |
6 |
| FabR2 - Pseudomonadaceae |
Fatty acid biosynthesis |
Unsaturated acyl-ACP; Unsaturated acyl-CoA |
TetR |
8 |
6 |
| FabR2 - Xanthomonadales |
Fatty acid biosynthesis |
Unsaturated acyl-ACP; Unsaturated acyl-CoA |
TetR |
4 |
6 |
| FabT - Streptococcus |
Fatty acid biosynthesis |
Long-chain acyl-ACP |
MarR |
8 |
27 |
| FadP - Burkholderia |
Fatty acid degradation |
|
TetR |
8 |
63 |
| FadP - Comamonadaceae |
Fatty acid degradation |
|
TetR |
11 |
46 |
| FadP - Ralstonia |
Fatty acid degradation |
|
TetR |
6 |
85 |
| FadR - Alteromonadales |
Fatty acid degradation |
Palmitoyl-CoA; Oleoyl-CoA |
GntR |
9 |
34 |
| FadR - Bacillales |
Fatty acid degradation |
Palmitoyl-CoA; Oleoyl-CoA |
TetR |
11 |
47 |
| FadR - Enterobacteriales |
Fatty acid degradation |
Palmitoyl-CoA; Oleoyl-CoA |
GntR |
12 |
112 |
| FadR - Pasteurellales |
Fatty acid degradation |
Palmitoyl-CoA; Oleoyl-CoA |
GntR |
9 |
17 |
| FadR - Psychromonadaceae/Aeromonadales |
Fatty acid degradation |
Palmitoyl-CoA; Oleoyl-CoA |
GntR |
6 |
10 |
| FadR - Shewanellaceae |
Fatty acid degradation |
Palmitoyl-CoA; Oleoyl-CoA |
GntR |
16 |
78 |
| FadR - Vibrionales |
Fatty acid degradation |
Palmitoyl-CoA; Oleoyl-CoA |
GntR |
10 |
59 |
| FapR - Bacillales |
Fatty acid biosynthesis |
Malonyl-CoA |
COG2050 |
11 |
48 |
| FapR - Staphylococcus |
Fatty acid biosynthesis |
Malonyl-CoA; Malonyl-ACP |
COG2050 |
7 |
30 |
| FatR - Bacillales |
Toxic fatty acid stress response |
Oleic acid; gamma-Linolenic acid; Linoleic acid; Phytanic acid |
TetR |
11 |
5 |
| FetR - Chloroflexi |
Iron homeostasis |
Iron ion, (Fe2+) |
DtxR |
5 |
13 |
| FliA - Desulfovibrionales |
Motility |
|
Sigma70 |
13 |
92 |
| Fnr - Bacillales |
Anaerobic metabolism |
Oxygen |
FNR |
11 |
34 |
| Fnr - Shewanellaceae |
Anaerobic metabolism |
Oxygen |
Crp |
15 |
579 |
| FrlR - Bacillales |
Fructoselysine utilization |
Fructoselysine 6-phosphate |
GntR |
11 |
11 |
| FruR - Bacillales |
Fructose utilization |
Fructose-6-phosphate |
DeoR |
11 |
17 |
| FruR - Enterobacteriales |
Central carbohydrate metabolism |
Fructose-1-phosphate; Fructose-1,6-diphosphate |
LacI |
12 |
213 |
| FruR - Oceanospirillales/Alteromonadales |
Fructose utilization |
Fructose-1-phosphate; Fructose-1,6-diphosphate |
LacI |
12 |
4 |
| FruR - Pasteurellales |
Fructose utilization |
Fructose-1-phosphate; Fructose-1,6-diphosphate |
LacI |
9 |
2 |
| FruR - Pseudomonadaceae |
Fructose utilization |
Fructose-1-phosphate; Fructose-1,6-diphosphate |
LacI |
8 |
16 |
| FruR - Psychromonadaceae/Aeromonadales |
Fructose utilization |
Fructose-1-phosphate; Fructose-1,6-diphosphate |
LacI |
6 |
22 |
| FruR - Staphylococcus |
Fructose utilization |
Fructose-6-phosphate |
DeoR |
7 |
7 |
| FruR - Streptococcus |
Fructose utilization |
Fructose |
DeoR |
8 |
8 |
| FruR - Thermotogales |
Fructose utilization |
Fructose-6-phosphate |
DeoR |
11 |
2 |
| FruR - Vibrionales |
Fructose utilization |
Fructose-1-phosphate; Fructose-1,6-diphosphate |
LacI |
10 |
60 |
| FucR - Streptococcus |
Fucose utilization |
Fucose |
DeoR |
8 |
1 |
| Fur - Alphaproteobacteria |
Iron homeostasis |
Iron ion, (Fe2+) |
Fur |
12 |
132 |
| Fur - Bacillales |
Iron homeostasis |
Iron ion, (Fe2+) |
Fur |
11 |
201 |
| Fur - Cyanobacteria |
Iron homeostasis |
Iron ion, (Fe2+) |
Fur |
14 |
167 |
| Fur - Desulfovibrionales |
Iron homeostasis |
Iron ion, (Fe2+) |
Fur |
13 |
229 |
| Fur - Enterobacteriales |
Iron homeostasis |
Iron ion, (Fe2+) |
Fur |
12 |
656 |
| Fur - Ralstonia |
Iron homeostasis |
Iron ion, (Fe2+) |
Fur |
6 |
94 |
| Fur - Staphylococcus |
Iron homeostasis |
Iron ion, (Fe2+) |
Fur |
7 |
106 |
| Fur - Thermotogales |
Iron homeostasis |
Iron ion, (Fe2+) |
Fur |
11 |
26 |
| GabR - Bacillales |
Gamma-aminobutyrate utilization |
Pyridoxal-5-phosphate; Gamma-aminobutyric acid |
GntR (MocR/GabR) |
11 |
8 |
| GalR - Shewanellaceae |
Galactose utilization |
Galactose |
LacI |
16 |
2 |
| GalR - Streptococcus |
Galactose utilization |
Galactose |
LacI |
8 |
15 |
| GalR - Thermotogales |
Galactosides utilization |
Galactose |
LacI |
11 |
18 |
| GalR/GalS - Enterobacteriales |
Galactose utilization |
Galactose |
LacI |
12 |
78 |
| GamR - Bacillales |
Glucosamine utilization |
Glucosamine-6-phosphate |
GntR |
11 |
25 |
| GanR - Bacillales |
Galactan utilization |
|
LacI |
11 |
8 |
| GcvA - Shewanellaceae |
Glycine metabolism |
Glycine |
LysR |
16 |
108 |
| GlcC - Enterobacteriales |
Glycolate utilization |
Glycolate |
GntR |
12 |
2 |
| GlcR - Bacillales |
|
|
DeoR |
11 |
7 |
| GlmR - Shewanellaceae |
Lipopolysaccharide biosynthesis |
Glucosamine-6-phosphate |
DeoR |
16 |
16 |
| GlnR - Bacillales |
Nitrogen assimilation |
Feedback-inhibited GlnA, glutamine synthetase |
MerR |
11 |
37 |
| GlnR - Staphylococcus |
Nitrogen assimilation |
Feedback-inhibited GlnA, glutamine synthetase |
MerR |
7 |
14 |
| GlnR - Streptococcus |
Nitrogen metabolism |
Feedback-inhibited GlnA, glutamine synthetase |
MerR |
8 |
38 |
| GloR - Thermotogales |
Glucose oligosaccharides utilization |
|
LacI |
11 |
9 |
| GlpR - Enterobacteriales |
Glycerol utilization |
Glycerol |
DeoR |
12 |
64 |
| GltC - Bacillales |
Glutamate metabolism |
2-oxoglutarate; Glutamate |
LysR |
11 |
20 |
| GltC - Staphylococcus |
Glutamate metabolism |
2-oxoglutarate; Glutamate |
LysR |
7 |
24 |
| GltC2 - Bacillales |
Glutamate metabolism |
2-oxoglutarate; Glutamate |
LysR |
11 |
8 |
| GltR - Bacillales |
|
|
LysR |
11 |
6 |
| GluR - Thermotogales |
Glucose utilization |
Glucose |
ROK |
11 |
7 |
| GlvR - Bacillales |
Maltose utilization |
Maltose-6-phosphate |
RpiR |
11 |
3 |
| GlvR - Staphylococcus |
Maltose utilization |
Maltose-6-phosphate |
RpiR |
7 |
5 |
| GlvR2 - Bacillales |
Maltose utilization |
Maltose-6-phosphate |
RpiR |
11 |
5 |
| GmuR - Bacillales |
Glucomannan utilization |
|
GntR |
11 |
6 |
| GntR - Bacillales |
Gluconate utilization |
D-gluconate; D-glucono-delta-lactone |
GntR |
11 |
3 |
| GntR - Enterobacteriales |
Gluconate utilization |
Gluconate |
LacI |
12 |
61 |
| GntR - Shewanellaceae |
Gluconate utilization |
Gluconate |
LacI |
16 |
4 |
| GntR - Staphylococcus |
Gluconate utilization |
Gluconate |
GntR |
7 |
7 |
| GudR - Bacillales |
Glucarate utilization; Galactarate utilization |
|
GntR |
11 |
6 |
| HcpR - Desulfovibrionales |
Nitrosative stress response |
Nitric oxide |
CRP/FNR |
11 |
30 |
| HcpR - Thermotogales |
Nitrosative stress response |
Nitric oxide |
Crp |
11 |
20 |
| HexR - Alteromonadales |
Central carbohydrate metabolism |
2-keto-3-deoxy-6-phosphogluconate |
RpiR |
9 |
38 |
| HexR - Burkholderia |
Central carbohydrate metabolism |
2-keto-3-deoxy-6-phosphogluconate |
RpiR |
8 |
38 |
| HexR - Comamonadaceae |
Central carbohydrate metabolism |
2-keto-3-deoxy-6-phosphogluconate |
RpiR |
11 |
28 |
| HexR - Enterobacteriales |
Central carbohydrate metabolism |
2-keto-3-deoxy-6-phosphogluconate |
RpiR |
12 |
45 |
| HexR - Oceanospirillales/Alteromonadales |
Central carbohydrate metabolism |
2-keto-3-deoxy-6-phosphogluconate |
RpiR |
12 |
40 |
| HexR - Pseudomonadaceae |
Central carbohydrate metabolism |
2-keto-3-deoxy-6-phosphogluconate |
RpiR |
8 |
44 |
| HexR - Psychromonadaceae/Aeromonadales |
Central carbohydrate metabolism |
2-keto-3-deoxy-6-phosphogluconate |
RpiR |
6 |
79 |
| HexR - Ralstonia |
Central carbohydrate metabolism |
2-keto-3-deoxy-6-phosphogluconate |
RpiR |
6 |
24 |
| HexR - Shewanellaceae |
Central carbohydrate metabolism |
2-keto-3-deoxy-6-phosphogluconate |
RpiR |
16 |
316 |
| HexR - Various betaproteobacteria |
Central carbohydrate metabolism |
2-keto-3-deoxy-6-phosphogluconate |
RpiR |
12 |
12 |
| HexR - Vibrionales |
Central carbohydrate metabolism |
2-keto-3-deoxy-6-phosphogluconate |
RpiR |
10 |
190 |
| HexR1 - Pseudomonadaceae |
Central carbohydrate metabolism |
2-keto-3-deoxy-6-phosphogluconate |
RpiR |
8 |
30 |
| HexR2 - Oceanospirillales/Alteromonadales |
Central carbohydrate metabolism |
2-keto-3-deoxy-6-phosphogluconate |
RpiR |
12 |
12 |
| HisR - Bacillales |
Histidine biosynthesis |
Histidine |
TrpR |
11 |
20 |
| HisR - Staphylococcus |
Histidine biosynthesis |
Histidine |
TrpR |
7 |
25 |
| HmcR - Desulfovibrionales |
Energy metabolism |
|
Rrf2 |
10 |
12 |
| HmgR - Shewanellaceae |
Tyrosine degradation |
4-hydroxyphenylpyruvate |
LysR |
16 |
32 |
| HrcA - Bacillales |
Heat shock response |
Heat shock |
HrcA |
11 |
26 |
| HrcA - Chloroflexi |
Heat shock response |
Heat shock |
HrcA |
5 |
16 |
| HrcA - Cyanobacteria |
Heat shock response |
Heat shock |
HrcA |
14 |
29 |
| HrcA - Desulfovibrionales |
Heat shock response |
Heat shock |
HrcA |
13 |
9 |
| HrcA - Staphylococcus |
Heat shock response |
Heat shock |
HrcA |
7 |
14 |
| HrcA - Streptococcus |
Heat shock response |
Heat shock |
HrcA |
8 |
26 |
| HrcA - Thermotogales |
Heat shock response |
Heat shock |
HrcA |
11 |
50 |
| HssR - Staphylococcus |
Heme efflux |
HssS, sensor histidine kinase (heme) |
OmpR |
7 |
7 |
| HutC - Enterobacteriales |
Histidine utilization |
Histidine |
GntR |
12 |
25 |
| HutC - Ralstonia |
Histidine utilization |
Histidine |
GntR |
6 |
21 |
| HutC - Shewanellaceae |
Histidine utilization |
Histidine |
GntR |
16 |
65 |
| HutR - Staphylococcus |
Histidine utilization |
Histidine |
LysR |
7 |
12 |
| HxlR - Bacillales |
Ribulose monophosphate pathway |
|
HxlR |
11 |
6 |
| HypR - Enterobacteriales |
Proline and 4-hydrohyproline utilization |
Proline |
GntR |
12 |
2 |
| HypR - Ralstonia |
Proline and 4-hydrohyproline utilization |
Proline |
GntR |
6 |
2 |
| HypR - Shewanellaceae |
Proline and 4-hydrohyproline utilization |
Proline |
GntR |
16 |
72 |
| IcaR - Staphylococcus |
Intercellular adhesion |
|
TetR |
7 |
4 |
| IclR - Enterobacteriales |
Glyoxylate bypass |
Pyruvate; Glyoxylate |
IclR |
12 |
10 |
| IlvY - Enterobacteriales |
Branched-chain amino acid biosynthesis |
2-Acetolactate |
LysR |
12 |
46 |
| IlvY - Shewanellaceae |
Branched-chain amino acid biosynthesis |
Acetohydroxybutyrate; 2-Acetolactate |
LysR |
16 |
64 |
| IolR - Bacillales |
Inositol utilization |
2-keto-5-deoxy-gluconate |
DeoR |
11 |
9 |
| IolR - Thermotogales |
Inositol utilization |
|
ROK |
11 |
4 |
| IolR2 - Bacillales |
Inositol utilization |
|
LacI |
11 |
4 |
| Irr - Rhizobiales |
Iron homeostasis |
Heme |
Fur |
15 |
122 |
| Irr - Rhodobacterales |
Iron homeostasis |
Heme |
Fur |
15 |
38 |
| Irr - Rhodospirillales |
Iron homeostasis |
Heme |
Fur |
9 |
13 |
| IscR - Alteromonadales |
Iron-sulfur cluster biogenesis |
Iron-sulfur cluster redox state |
Rrf2 |
18 |
86 |
| IscR - Betaproteobacteria |
Iron-sulfur cluster biogenesis |
Iron-sulfur cluster redox state |
Rrf2 |
15 |
29 |
| IscR - Enterobacteriales |
Iron-sulfur cluster biogenesis |
Iron-sulfur cluster redox state |
Rrf2 |
5 |
22 |
| IscR - Enterobacteriales |
Iron-sulfur cluster biogenesis |
|
Rrf2 |
12 |
45 |
| IscR - Pasteurellales |
Iron-sulfur cluster biogenesis |
Iron-sulfur cluster redox state |
Rrf2 |
6 |
24 |
| IscR - Pseudomonadales |
Iron-sulfur cluster biogenesis |
Iron-sulfur cluster redox state |
Rrf2 |
4 |
6 |
| IscR - Ralstonia |
Iron-sulfur cluster biogenesis |
Iron-sulfur cluster redox state |
Rrf2 |
6 |
12 |
| IscR - Rhodobacterales |
Iron-sulfur cluster biogenesis |
Iron-sulfur cluster redox state |
Rrf2 |
10 |
91 |
| IscR - Shewanellaceae |
Iron-sulfur cluster biogenesis |
Iron-sulfur cluster redox state |
Rrf2 |
16 |
93 |
| IscR - Vibrionales |
Iron-sulfur cluster biogenesis |
Iron-sulfur cluster redox state |
Rrf2 |
5 |
24 |
| KdgR - Bacillales |
Pectin utilization |
2-keto-3-deoxygluconate |
LacI |
11 |
13 |
| KdgR - Enterobacteriales |
Pectin and polygalacturonate utlization |
2-keto-3-deoxygluconate |
IclR |
12 |
155 |
| KdgR - Pasteurellales |
Pectin and polygalacturonate utlization |
2-keto-3-deoxygluconate |
IclR |
9 |
17 |
| KdgR - Thermotogales |
Glucuronate utilization |
2-keto-3-deoxygluconate |
IclR |
11 |
26 |
| KdgR - Vibrionales |
Pectin and polygalacturonate utlization |
2-keto-3-deoxygluconate |
IclR |
10 |
40 |
| KipR - Bacillales |
Sporulation |
|
IclR |
11 |
9 |
| LacI - Enterobacteriales |
Lactose utilization |
Lactose |
LacI |
12 |
5 |
| LacR - Staphylococcus |
Lactose utilization |
Galactose-6-phosphate |
DeoR |
7 |
4 |
| LacR - Streptococcus |
Lactose utilization |
Lactose |
DeoR |
8 |
9 |
| LevR - Bacillales |
Levan utilization |
|
LevR |
11 |
2 |
| LexA - Alteromonadales |
SOS response |
DNA damage |
LexA |
9 |
111 |
| LexA - Bacillales |
SOS response |
DNA damage |
LexA |
11 |
202 |
| LexA - Burkholderia |
SOS response |
DNA damage |
LexA |
8 |
75 |
| LexA - Caulobacterales |
SOS response |
DNA damage |
LexA |
4 |
47 |
| LexA - Chloroflexi |
SOS response |
DNA damage |
LexA |
5 |
52 |
| LexA - Comamonadaceae |
SOS response |
DNA damage |
LexA |
11 |
71 |
| LexA - Corynebacteriaceae |
SOS response |
DNA damage |
LexA |
8 |
100 |
| LexA - Cyanobacteria |
SOS response |
DNA damage |
LexA |
14 |
25 |
| LexA - Desulfovibrionales |
SOS response |
DNA damage |
LexA |
10 |
4 |
| LexA - Desulfuromonadales |
SOS response |
DNA damage |
LexA |
9 |
11 |
| LexA - Enterobacteriales |
SOS response |
DNA damage |
LexA |
12 |
253 |
| LexA - Oceanospirillales/Alteromonadales |
SOS response |
DNA damage |
LexA |
12 |
91 |
| LexA - Pasteurellales |
SOS response |
DNA damage |
LexA |
9 |
96 |
| LexA - Pseudomonadaceae |
SOS response |
DNA damage |
LexA |
8 |
92 |
| LexA - Psychromonadaceae/Aeromonadales |
SOS response |
DNA damage |
LexA |
6 |
77 |
| LexA - Ralstonia |
SOS response |
DNA damage |
LexA |
6 |
62 |
| LexA - Rhizobiales |
SOS response |
DNA damage |
LexA |
15 |
212 |
| LexA - Rhodobacterales |
SOS response |
DNA damage |
LexA |
15 |
128 |
| LexA - Rhodospirillales |
SOS response |
DNA damage |
LexA |
9 |
52 |
| LexA - Shewanellaceae |
SOS response |
DNA damage |
LexA |
16 |
192 |
| LexA - Sphingomonadales |
SOS response |
DNA damage |
LexA |
7 |
61 |
| LexA - Staphylococcus |
SOS response |
DNA damage |
LexA |
7 |
85 |
| LexA - Various betaproteobacteria |
SOS response |
DNA damage |
LexA |
12 |
12 |
| LexA - Vibrionales |
SOS response |
DNA damage |
LexA |
10 |
184 |
| LexA - Xanthomonadales |
SOS response |
DNA damage |
LexA |
4 |
6 |
| LexA2 - Pseudomonadaceae |
SOS response |
DNA damage |
LexA |
9 |
5 |
| LexA2 - Xanthomonadales |
SOS response |
DNA damage |
LexA |
4 |
2 |
| LicR - Bacillales |
Beta-glucosides utilization |
LicABC, beta-glucoside PTS system; HPr, phosphocarrier protein |
BglG |
11 |
5 |
| LiuQ - Burkholderia |
Branched-chain amino acid degradation |
|
TetR |
8 |
32 |
| LiuQ - Comamonadaceae |
Branched-chain amino acid degradation |
|
TetR |
11 |
8 |
| LiuQ - Ralstonia |
Branched-chain amino acid degradation |
|
TetR |
6 |
14 |
| LiuR - Alteromonadales |
Branched-chain amino acid degradation |
|
MerR |
9 |
68 |
| LiuR - Burkholderia |
Branched-chain amino acid degradation |
|
MerR |
8 |
6 |
| LiuR - Caulobacterales |
Branched-chain amino acid degradation |
|
MerR |
4 |
14 |
| LiuR - Comamonadaceae |
Branched-chain amino acid degradation |
|
MerR |
11 |
59 |
| LiuR - Oceanospirillales/Alteromonadales |
Branched-chain amino acid degradation |
|
MerR |
12 |
28 |
| LiuR - Pseudomonadaceae |
Branched-chain amino acid degradation |
|
MerR |
8 |
32 |
| LiuR - Psychromonadaceae/Aeromonadales |
Branched-chain amino acid degradation |
|
MerR |
6 |
20 |
| LiuR - Ralstonia |
Branched-chain amino acid degradation |
|
MerR |
6 |
57 |
| LiuR - Rhizobiales |
Branched-chain amino acid degradation |
|
MerR |
15 |
84 |
| LiuR - Rhodobacterales |
Branched-chain amino acid degradation |
|
MerR |
15 |
19 |
| LiuR - Rhodospirillales |
Branched-chain amino acid degradation |
|
MerR |
9 |
17 |
| LiuR - Shewanellaceae |
Branched-chain amino acid degradation |
|
MerR |
16 |
134 |
| LiuR - Sphingomonadales |
Branched-chain amino acid degradation |
|
MerR |
7 |
65 |
| LiuR - Various betaproteobacteria |
Branched-chain amino acid degradation |
|
MerR |
12 |
31 |
| LiuR - Vibrionales |
Branched-chain amino acid degradation |
|
MerR |
10 |
38 |
| LldR - Corynebacteriaceae |
Lactate utilization |
L-lactate |
GntR |
8 |
9 |
| LldR - Desulfovibrionales |
Lactate utilization |
L-lactate |
GntR |
13 |
11 |
| LldR - Enterobacteriales |
Lactate utilization |
L-lactate |
GntR |
12 |
10 |
| LldR - Ralstonia |
Lactate utilization |
L-lactate |
GntR |
6 |
8 |
| LldR - Shewanellaceae |
Lactate utilization |
L-lactate |
LysR |
16 |
14 |
| LmrA - Bacillales |
Multidrug resistance |
Quercetin; Fisetin; Catechin |
TetR |
11 |
5 |
| LutR - Bacillales |
Lactate utilization |
L-lactate |
GntR |
11 |
18 |
| LysX - Desulfovibrionales |
Lysine biosynthesis |
|
TrmB |
13 |
11 |
| MalI - Enterobacteriales |
Maltose utilization |
|
LacI |
12 |
19 |
| MalR - Shewanellaceae |
Maltodextrin utilization |
Maltose |
LacI |
16 |
68 |
| MalR - Staphylococcus |
Maltose utilization |
Maltose |
LacI |
7 |
5 |
| MalR - Streptococcus |
Maltose utilization |
Maltose |
LacI |
8 |
52 |
| ManR - Bacillales |
Mannose utilization |
ManP, mannose PTS system; HPr, phosphocarrier protein |
BglG |
11 |
6 |
| ManR - Staphylococcus |
Mannose utilization |
Mannose-6-phosphate |
BglG |
7 |
4 |
| ManR - Thermotogales |
Mannan and beta-mannosides utilization |
Mannose |
ROK |
11 |
6 |
| ManR1 - Shewanellaceae |
Mannose utilization |
Mannose |
LacI |
16 |
4 |
| ManR2 - Shewanellaceae |
Mannose utilization |
Mannose |
LacI |
16 |
5 |
| MarR - Enterobacteriales |
Antibiotic resistance |
Salicylate; Tetracycline; Chloramphenicol |
MarR |
12 |
10 |
| MdxR - Bacillales |
Maltodextrin utilization |
|
LacI |
11 |
2 |
| MecI - Staphylococcus |
Penicillin and methicillin resistance |
Penicillin G; Methicillin |
MarR |
7 |
4 |
| MepR - Staphylococcus |
Multidrug resistance |
Bis-indoles; Distamycin |
MarR |
7 |
12 |
| MetJ - Shewanellaceae |
Methionine biosynthesis |
S-adenosylmethionine |
MetJ |
16 |
218 |
| MetR - Enterobacteriales |
Methionine biosynthesis |
L-homocysteine |
LysR |
12 |
113 |
| MetR - Shewanellaceae |
Methionine biosynthesis |
Homocysteine |
LysR |
16 |
102 |
| MhqR - Bacillales |
2-Methylhydroquinone and catechol resistance |
|
MarR |
11 |
35 |
| MntR - Bacillales |
Manganese homeostasis |
Manganese ion, (Mn2+) |
DtxR |
11 |
16 |
| MntR - Chloroflexi |
Manganese homeostasis |
Manganese ion, (Mn2+) |
DtxR |
5 |
9 |
| MntR - Enterobacteriales |
Manganese homeostasis |
Manganese ion, (Mn2+) |
DtxR |
12 |
23 |
| MntR - Staphylococcus |
Manganese homeostasis |
Manganese ion, (Mn2+) |
DtxR |
7 |
15 |
| MntR - Streptococcus |
Metal homeostasis |
Manganese ion, (Mn2+); Iron ion, (Fe2+) |
DtxR |
8 |
22 |
| ModE - Burkholderia |
Molybdenum homeostasis |
Molybdate |
ModE |
8 |
8 |
| ModE - Caulobacterales |
Molybdenum homeostasis |
Molybdate |
ModE |
4 |
5 |
| ModE - Comamonadaceae |
Molybdenum homeostasis |
Molybdate |
ModE |
11 |
10 |
| ModE - Desulfovibrionales |
Molybdopterin biosynthesis; Molybdenum homeostasis |
|
ModE |
10 |
48 |
| ModE - Desulfuromonadales |
Molybdenum homeostasis |
Molybdate |
ModE |
9 |
10 |
| ModE - Enterobacteriales |
Molybdopterin biosynthesis; Molybdenum homeostasis |
Molybdate |
ModE |
12 |
55 |
| ModE - Moraxellaceae |
Molybdenum homeostasis |
Molybdate |
ModE |
4 |
1 |
| ModE - Oceanospirillales/Alteromonadales |
Molybdenum homeostasis |
Molybdate |
ModE |
12 |
2 |
| ModE - Pasteurellales |
Molybdenum homeostasis |
Molybdate |
ModE |
9 |
21 |
| ModE - Pseudomonadaceae |
Molybdenum homeostasis |
Molybdate |
ModE |
8 |
9 |
| ModE - Psychromonadaceae/Aeromonadales |
Molybdenum homeostasis |
Molybdate |
ModE |
6 |
3 |
| ModE - Ralstonia |
Molybdenum homeostasis |
Molybdate |
ModE |
6 |
8 |
| ModE - Rhizobiales |
Molybdenum homeostasis |
Molybdate |
ModE |
15 |
11 |
| ModE - Rhodobacterales |
Molybdenum homeostasis |
Molybdate |
ModE |
15 |
5 |
| ModE - Rhodospirillales |
Molybdenum homeostasis |
Molybdate |
ModE |
9 |
2 |
| ModE - Shewanellaceae |
Molybdopterin biosynthesis; Molybdenum homeostasis |
Molybdate |
ModE |
16 |
10 |
| ModE - Sphingomonadales |
Molybdenum homeostasis |
Molybdate |
ModE |
7 |
2 |
| ModE - Various betaproteobacteria |
Molybdenum homeostasis |
Molybdate |
ModE |
12 |
5 |
| ModE - Vibrionales |
Molybdenum homeostasis |
Molybdate |
ModE |
10 |
2 |
| ModR - Chloroflexi |
Molybdenum homeostasis |
Molybdenum |
PadR |
5 |
4 |
| ModR - Desulfovibrionales |
Molybdenum homeostasis |
Molybdate |
PF00589 |
13 |
25 |
| MprA - Enterobacteriales |
Multidrug resistance |
2,4-Dinitrophenol; Carbonyl cyanide m-chlorophenylhydrazone |
MarR |
12 |
25 |
| MsmR - Bacillales |
Alpha-galactosides utilization |
|
LacI |
11 |
6 |
| MtaR - Streptococcus |
Methionine metabolism |
Methionine |
LysR |
8 |
48 |
| MtlR - Bacillales |
Mannitol utilization |
MtlA, mannitol PTS system; HPr, phosphocarrier protein |
BglG |
11 |
7 |
| MtlR - Shewanellaceae |
Mannitol utilization |
Mannitol |
DeoR |
16 |
1 |
| MtlR - Staphylococcus |
Mannitol utilization |
Mannitol-6-phosphate |
BglG |
7 |
5 |
| Mur - Rhizobiales |
Manganese homeostasis |
Manganese ion, (Mn2+) |
Fur |
21 |
39 |
| MurR - Bacillales |
N-acetylmuramate utilization |
N-acetylmuramate-6-phosphate |
RpiR |
11 |
4 |
| MurR - Staphylococcus |
N-acetylmuramate utilization |
N-acetylmuramate-6-phosphate |
RpiR |
7 |
6 |
| NadQ - Caulobacterales |
NAD biosynthesis |
|
COG4111 |
4 |
16 |
| NadQ - Comamonadaceae |
NAD biosynthesis |
|
COG4111 |
11 |
6 |
| NadQ - Moraxellaceae |
NAD biosynthesis |
|
COG4111 |
4 |
6 |
| NadQ - Rhizobiales |
NAD biosynthesis |
|
COG4111 |
15 |
22 |
| NadQ - Rhodobacterales |
NAD biosynthesis |
|
COG4111 |
15 |
5 |
| NadQ - Rhodospirillales |
NAD biosynthesis |
|
COG4111 |
9 |
10 |
| NadQ - Various betaproteobacteria |
NAD biosynthesis |
|
COG4111 |
12 |
2 |
| NadR - Enterobacteriales |
NAD biosynthesis |
NAD |
NadR |
12 |
27 |
| NagC - Enterobacteriales |
N-acetylglucosamine utilization |
N-acetylglucosamine-6-phosphate |
ROK |
12 |
68 |
| NagC - Oceanospirillales/Alteromonadales |
N-acetylglucosamine utilization |
N-acetylglucosamine-6-phosphate |
ROK |
12 |
5 |
| NagC - Pasteurellales |
N-acetylglucosamine utilization |
N-acetylglucosamine-6-phosphate |
ROK |
9 |
16 |
| NagC - Psychromonadaceae/Aeromonadales |
N-acetylglucosamine utilization |
N-acetylglucosamine-6-phosphate |
ROK |
6 |
16 |
| NagC - Vibrionales |
N-acetylglucosamine utilization |
N-acetylglucosamine-6-phosphate |
ROK |
10 |
199 |
| NagQ - Burkholderia |
N-acetylglucosamine utilization |
N-acetylglucosamine |
GntR |
8 |
7 |
| NagQ - Caulobacterales |
N-acetylglucosamine utilization |
N-acetylglucosamine |
GntR |
4 |
13 |
| NagQ - Oceanospirillales/Alteromonadales |
N-acetylglucosamine utilization |
N-acetylglucosamine |
GntR |
12 |
11 |
| NagQ - Pseudomonadaceae |
N-acetylglucosamine utilization |
N-acetylglucosamine |
GntR |
8 |
4 |
| NagQ - Ralstonia |
N-acetylglucosamine utilization |
N-acetylglucosamine |
GntR |
6 |
2 |
| NagQ - Rhizobiales |
N-acetylglucosamine utilization |
N-acetylglucosamine |
GntR |
15 |
16 |
| NagQ - Rhodobacterales |
N-acetylglucosamine utilization |
N-acetylglucosamine |
GntR |
15 |
8 |
| NagQ - Rhodospirillales |
N-acetylglucosamine utilization |
N-acetylglucosamine |
GntR |
9 |
6 |
| NagQ - Various betaproteobacteria |
N-acetylglucosamine utilization |
N-acetylglucosamine |
GntR |
12 |
12 |
| NagQ - Xanthomonadales |
N-acetylglucosamine utilization |
N-acetylglucosamine |
GntR |
4 |
2 |
| NagR - Alteromonadales |
N-acetylglucosamine utilization |
N-acetylglucosamine |
LacI |
9 |
27 |
| NagR - Bacillales |
N-acetylglucosamine utilization |
N-acetylglucosamine-6-phosphate |
GntR |
11 |
15 |
| NagR - Oceanospirillales/Alteromonadales |
N-acetylglucosamine utilization |
N-acetylglucosamine |
LacI |
12 |
19 |
| NagR - Shewanellaceae |
N-acetylglucosamine utilization |
N-acetylglucosamine |
LacI |
16 |
105 |
| NagR - Streptococcus |
N-acetylglucosamine utilization |
N-acetylglucosamine-6-phosphate |
GntR |
8 |
36 |
| NagR - Xanthomonadales |
N-acetylglucosamine utilization |
N-acetylglucosamine |
LacI |
4 |
17 |
| NanR - Enterobacteriales |
Sialic acid utilization |
N-acetylneuraminic acid |
GntR |
2 |
6 |
| NanR - Enterobacteriales |
Sialic acid utilization |
N-acetylneuraminic acid |
GntR |
12 |
7 |
| NanR - Shewanellaceae |
Sialic acid utilization |
N-acetylneuraminic acid |
GntR |
16 |
4 |
| NanR - Streptococcus |
Sialic acid utilization |
N-acetylneuraminic acid |
RpiR |
8 |
9 |
| NanX - Gammaproteobacteria |
Sialic acid utilization |
N-acetylneuraminic acid |
RpiR |
10 |
27 |
| NarP - Enterobacteriales |
Nitrate and nitrite respiration |
Nitrate; Nitrite |
LuxR |
12 |
81 |
| NarP - Shewanellaceae |
Nitrate and nitrite respiration |
Nitrate; Nitrite |
LuxR |
16 |
235 |
| NhaR - Enterobacteriales |
Osmotic stress response |
Potassium ion |
LysR |
12 |
11 |
| NhaR - Shewanellaceae |
Osmotic stress response |
Potassium ion |
LysR |
16 |
33 |
| NiaR - Bacillales |
NAD biosynthesis |
Niacin |
HTH_11 |
11 |
26 |
| NiaR - Clostridiaceae |
NAD biosynthesis |
Niacin |
HTH_11 |
20 |
27 |
| NiaR - Lactobacillaceae |
NAD biosynthesis |
Niacin |
HTH_11 |
15 |
7 |
| NiaR - Streptococcaceae |
NAD biosynthesis |
Niacin |
HTH_11 |
15 |
23 |
| NiaR - Thermotogales |
NAD biosynthesis |
Niacin |
HTH_11 |
11 |
13 |
| NikR - Burkholderia |
Nickel homeostasis |
Nickel ion, (Ni2+) |
CopG |
8 |
2 |
| NikR - Comamonadaceae |
Nickel homeostasis |
Nickel ion, (Ni2+) |
CopG |
11 |
3 |
| NikR - Desulfovibrionales |
Nickel homeostasis |
Nickel ion, (Ni2+) |
CopG |
13 |
19 |
| NikR - Desulfuromonadales |
Nickel homeostasis |
Nickel ion, (Ni2+) |
CopG |
9 |
7 |
| NikR - Enterobacteriales |
Nickel homeostasis |
Nickel ion, (Ni2+) |
CopG |
12 |
9 |
| NikR - Pseudomonadaceae |
Nickel homeostasis |
Nickel ion, (Ni2+) |
CopG |
8 |
2 |
| NikR - Rhizobiales |
Nickel homeostasis |
Nickel ion, (Ni2+) |
CopG |
15 |
11 |
| NikR - Rhodobacterales |
Nickel homeostasis |
Nickel ion, (Ni2+) |
CopG |
15 |
2 |
| NikR - Rhodospirillales |
Nickel homeostasis |
Nickel ion, (Ni2+) |
CopG |
9 |
2 |
| NikR - Shewanellaceae |
Nickel homeostasis |
Nickel ion, (Ni2+) |
CopG |
16 |
8 |
| NikR - Various betaproteobacteria |
Nickel homeostasis |
Nickel ion, (Ni2+) |
CopG |
12 |
2 |
| NmlR - Streptococcus |
Nitrosative stress response |
Nitric oxide |
MerR |
8 |
5 |
| NorR - Alteromonadales |
Nitrosative stress response |
Nitric oxide |
Fis |
9 |
18 |
| NorR - Burkholderia |
Nitrosative stress response |
Nitric oxide |
Fis |
8 |
5 |
| NorR - Comamonadaceae |
Nitrosative stress response |
Nitric oxide |
Fis |
11 |
25 |
| NorR - Enterobacteriales |
Nitrosative stress response |
Nitric oxide |
Fis |
12 |
33 |
| NorR - Oceanospirillales/Alteromonadales |
Nitrosative stress response |
Nitric oxide |
Fis |
12 |
13 |
| NorR - Pseudomonadaceae |
Nitrosative stress response |
Nitric oxide |
Fis |
8 |
40 |
| NorR - Psychromonadaceae/Aeromonadales |
Nitrosative stress response |
Nitric oxide |
Fis |
6 |
21 |
| NorR - Ralstonia |
Nitrosative stress response |
Nitric oxide |
Fis |
6 |
35 |
| NorR - Shewanellaceae |
Nitrosative stress response |
Nitric oxide |
Fis |
16 |
91 |
| NorR - Vibrionales |
Nitrosative stress response |
Nitric oxide |
Fis |
10 |
40 |
| NorR2 - Vibrionales |
Nitrosative stress response |
Nitric oxide |
Fis |
10 |
19 |
| NrdR - Actinobacteria |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
NrdR |
15 |
57 |
| NrdR - Alphaproteobacteria |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
NrdR |
8 |
27 |
| NrdR - Bacillales |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
NrdR |
11 |
27 |
| NrdR - Betaproteobacteria |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
NrdR |
9 |
20 |
| NrdR - Chlamydia |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
NrdR |
5 |
10 |
| NrdR - Chloroflexi |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
NrdR |
5 |
8 |
| NrdR - Corynebacteriaceae |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
NrdR |
8 |
26 |
| NrdR - Cyanobacteria |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
NrdR |
5 |
9 |
| NrdR - Cyanobacteria |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
YbaD |
14 |
8 |
| NrdR - Deinococcus-Thermus |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
NrdR |
2 |
5 |
| NrdR - Deltaproteobacteria |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
NrdR |
6 |
18 |
| NrdR - Enterobacteriales |
Ribonucleotide reductases |
Deoxyribonucleotides |
NrdR |
12 |
70 |
| NrdR - Firmicutes |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
NrdR |
33 |
167 |
| NrdR - Gammaproteobacteria |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
NrdR |
35 |
151 |
| NrdR - Mixture |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
NrdR |
5 |
11 |
| NrdR - Ralstonia |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
YbaD |
6 |
18 |
| NrdR - Shewanellaceae |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
YbaD |
16 |
64 |
| NrdR - Staphylococcus |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
NrdR |
7 |
30 |
| NrdR - Streptococcus |
Ribonucleotide reductases |
Deoxyribonucleotides |
YbaD |
8 |
40 |
| NrdR - Thermotogales |
Deoxyribonucleotide biosynthesis |
Deoxyribonucleotides |
YbaD |
11 |
60 |
| NreC - Staphylococcus |
Nitrate and nitrite respiration |
NreB, sensor histidine kinase (Nitrate, Nitrite) |
OmpR |
7 |
17 |
| NrtR - Actinobacteria-1 |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
6 |
9 |
| NrtR - Actinobacteria-2 |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
5 |
5 |
| NrtR - Actinobacteria-3 |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
3 |
5 |
| NrtR - Actinobacteria-4 |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
5 |
11 |
| NrtR - Bacteroidetes-1 |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
2 |
2 |
| NrtR - Bacteroidetes-2 |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
4 |
15 |
| NrtR - Bacteroidetes-3 |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
3 |
9 |
| NrtR - Chloroflexi |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
1 |
4 |
| NrtR - Chloroflexi |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
5 |
31 |
| NrtR - Corynebacteriaceae |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
8 |
6 |
| NrtR - Cyanobacteria |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
7 |
14 |
| NrtR - Cyanobacteria |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
14 |
17 |
| NrtR - Cytophaga |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
2 |
4 |
| NrtR - Firmicutes-1 |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
4 |
6 |
| NrtR - Firmicutes-2 |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
3 |
3 |
| NrtR - Firmicutes-3 |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
1 |
3 |
| NrtR - Firmicutes-4 |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
1 |
2 |
| NrtR - Gammaproteobacteria-1 |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
6 |
14 |
| NrtR - Gammaproteobacteria-2 |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
3 |
5 |
| NrtR - Gammaproteobacteria-3 |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
3 |
4 |
| NrtR - Pirellula |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
1 |
2 |
| NrtR - Shewanellaceae |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
16 |
6 |
| NrtR - Streptococcus |
NAD biosynthesis |
Adenosine diphosphate ribose |
Nudix |
8 |
3 |
| NrtR2 - Cyanobacteria |
NAD biosynthesis |
Adenosine diphosphate ribose |
NrtR |
14 |
5 |
| NsrR - Bacillales |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
11 |
30 |
| NsrR - Alteromonadales |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
9 |
2 |
| NsrR - Burkholderia |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
8 |
23 |
| NsrR - Caulobacterales |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
4 |
3 |
| NsrR - Comamonadaceae |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
11 |
15 |
| NsrR - Enterobacteriales |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
12 |
73 |
| NsrR - Moraxellaceae |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
4 |
7 |
| NsrR - Neisseriales |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
12 |
5 |
| NsrR - Oceanospirillales/Alteromonadales |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
12 |
8 |
| NsrR - Psychromonadaceae/Aeromonadales |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
6 |
5 |
| NsrR - Ralstonia |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
6 |
23 |
| NsrR - Rhizobiales |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
15 |
2 |
| NsrR - Rhodobacterales |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
15 |
17 |
| NsrR - Rhodospirillales |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
9 |
13 |
| NsrR - Shewanellaceae |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
16 |
51 |
| NsrR - Sphingomonadales |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
7 |
5 |
| NsrR - Various betaproteobacteria |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
12 |
16 |
| NsrR - Vibrionales |
Nitrosative stress response |
Nitric oxide |
Rrf2 |
10 |
40 |
| NtcA - Cyanobacteria |
Nitrogen assimilation |
2-oxoglutarate |
Fnr |
14 |
228 |
| NtcB - Cyanobacteria |
Nitrogen assimilation |
Nitrite |
LysR |
14 |
44 |
| NtdR - Bacillales |
Neotrehalosadiamine biosynthesis |
3,3'-neotrehalosadiamine |
LacI |
11 |
7 |
| NtrC - Enterobacteriales |
Nitrogen assimilation |
Phosphorylated NtrB, signal histidine kinase |
Fis |
12 |
130 |
| NtrC - Shewanellaceae |
Nitrogen assimilation |
Phosphorylated NtrB, signal histidine kinase |
Fis |
16 |
94 |
| OhcR - Desulfovibrionales |
Energy metabolism |
|
RocR |
10 |
10 |
| OhrR - Bacillales |
Peroxide stress response |
tert-Butyl hydroperoxide; Diamide; Cumene hydroperoxide; Hydrogen peroxide |
MarR |
11 |
11 |
| PUR - Shewanellaceae |
Purine metabolism |
|
|
16 |
60 |
| PaaR - Actinobacteria |
Phenylacetic acid degradation |
Phenylacetic acid-CoA |
TetR |
17 |
85 |
| PaaR - Deinococcus-Thermus |
Phenylacetic acid degradation |
Phenylacetyl coenzyme A |
TetR |
5 |
4 |
| PadR - Bacillales |
Phenolic acid stress response |
p-coumaric; Ferulic acid |
PadR |
11 |
5 |
| PdhR - Alteromonadales |
Pyruvate metabolism |
Pyruvate |
GntR |
9 |
15 |
| PdhR - Enterobacteriales |
Pyruvate metabolism |
Pyruvate |
GntR |
12 |
36 |
| PdhR - Oceanospirillales/Alteromonadales |
Pyruvate metabolism |
Pyruvate |
GntR |
12 |
22 |
| PdhR - Pasteurellales |
Pyruvate metabolism |
Pyruvate |
GntR |
9 |
0 |
| PdhR - Psychromonadaceae/Aeromonadales |
Pyruvate metabolism |
Pyruvate |
GntR |
6 |
8 |
| PdhR - Shewanellaceae |
Pyruvate metabolism |
Pyruvate |
GntR |
16 |
109 |
| PdhR - Vibrionales |
Pyruvate metabolism |
Pyruvate |
GntR |
10 |
16 |
| PdxR - Corynebacteriaceae |
Pyridoxine biosynthesis |
Pyridoxal-5-phosphate |
GntR |
8 |
3 |
| PdxR - Staphylococcus |
Pyridoxine biosynthesis |
Pyridoxal-5-phosphate |
GntR |
7 |
7 |
| PdxR - Streptococcus |
Pyridoxine biosynthesis |
Pyridoxal-5-phosphate |
GntR |
8 |
10 |
| PedR - Cyanobacteria |
Photosynthesis; Carbon fixation |
Trx, thioredoxin protein |
LuxR |
14 |
56 |
| PerR - Bacillales |
Oxidative stress response; Peroxide stress response |
Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) |
Fur |
11 |
131 |
| PerR - Cyanobacteria |
Peroxide stress response |
Manganese ion, (Mn2+) |
Fur |
14 |
20 |
| PerR - Desulfovibrionales |
Peroxide stress response |
|
Fur |
13 |
39 |
| PerR - Staphylococcus |
Oxidative stress response |
Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) |
Fur |
7 |
69 |
| PerR - Streptococcus |
Iron homeostasis; Oxidative stress response |
Hydrogen peroxide; Manganese ion, (Mn2+); Iron ion, (Fe2+) |
Fur |
8 |
37 |
| PflR - Shewanellaceae |
Formate metabolism |
Formate |
LysR |
16 |
35 |
| PflR - Streptococcus |
Formate metabolism |
|
DeoR |
8 |
21 |
| PhhR - Pseudomonadales |
Aromatic amino acid metabolism |
Tyrosine; Phenylalanine |
Fis |
8 |
32 |
| PhnF - Desulfovibrionales |
Phosphonate utilization |
|
GntR |
10 |
5 |
| PhnF - Enterobacteriales |
Phosphonate utilization |
|
GntR |
12 |
6 |
| PhnF - Ralstonia |
Phosphonate utilization |
|
GntR |
6 |
20 |
| PhoB - Desulfovibrionales |
Phosphate metabolism |
Inorganic phosphate |
OmpR |
13 |
107 |
| PhoB - Thermotogales |
Phosphate metabolism |
Inorganic phosphate |
OmpR |
11 |
11 |
| PipR - Streptococcus |
|
|
TetR |
8 |
26 |
| PirR - Cyanobacteria |
Salt stress response |
|
LysR |
14 |
11 |
| PnuR - Shewanellaceae |
NAD biosynthesis |
|
Crp |
16 |
4 |
| PrpR - Shewanellaceae |
Methylcitrate utilization |
2-methylcitrate |
GntR |
16 |
44 |
| PsrA - Alteromonadales |
Fatty acid degradation |
Oleate |
TetR |
9 |
26 |
| PsrA - Burkholderia |
Fatty acid degradation |
Oleate |
TetR |
8 |
16 |
| PsrA - Caulobacterales |
Fatty acid degradation |
Oleate |
TetR |
4 |
70 |
| PsrA - Oceanospirillales/Alteromonadales |
Fatty acid degradation |
Oleate |
TetR |
12 |
67 |
| PsrA - Pseudomonadaceae |
Fatty acid degradation |
Oleate |
TetR |
8 |
69 |
| PsrA - Psychromonadaceae/Aeromonadales |
Fatty acid degradation |
Oleate |
TetR |
6 |
19 |
| PsrA - Ralstonia |
Fatty acid degradation |
Oleate |
TetR |
6 |
9 |
| PsrA - Rhizobiales |
Fatty acid degradation |
Oleate |
TetR |
15 |
12 |
| PsrA - Shewanellaceae |
Fatty acid degradation |
Oleate |
TetR |
16 |
295 |
| PsrA - Various betaproteobacteria |
Fatty acid degradation |
Oleate |
TetR |
12 |
34 |
| PsrA - Vibrionales |
Fatty acid degradation |
Oleate |
TetR |
10 |
49 |
| PsrA - Xanthomonadales |
Fatty acid degradation |
Oleate |
TetR |
4 |
7 |
| PurR - Bacillales |
Purine metabolism |
5-phosphoribosyl 1-pyrophosphate |
PurR |
11 |
101 |
| PurR - Enterobacteriales |
Purine metabolism |
Hypoxanthine; Guanine |
LacI |
12 |
298 |
| PurR - Pasteurellales |
Purine metabolism |
Hypoxanthine; Guanine |
LacI |
9 |
77 |
| PurR - Staphylococcus |
Purine metabolism |
5-phosphoribosyl 1-pyrophosphate |
PurR |
7 |
26 |
| PurR - Vibrionales |
Purine metabolism |
Hypoxanthine; Guanine |
LacI |
10 |
149 |
| PuuR - Thermotogales |
Spermidine biosynthesis |
Putrescine |
Xre |
11 |
16 |
| QdoR - Bacillales |
Multidrug resistance |
Quercetin; Fisetin; Tamarixetin; Galangin |
TetR |
11 |
7 |
| RbsR - Bacillales |
Ribose utilization |
Ribose |
LacI |
11 |
12 |
| RbsR - Burkholderia |
Ribose utilization |
Ribose |
LacI |
8 |
7 |
| RbsR - Comamonadaceae |
Ribose utilization |
Ribose |
LacI |
11 |
2 |
| RbsR - Desulfovibrionales |
Ribose utilization |
Ribose |
LacI |
10 |
1 |
| RbsR - Enterobacteriales |
Ribose utilization |
Ribose |
LacI |
12 |
17 |
| RbsR - Pasteurellales |
Ribose utilization |
Ribose |
LacI |
9 |
6 |
| RbsR - Pseudomonadaceae |
Ribose utilization |
Ribose |
LacI |
8 |
5 |
| RbsR - Psychromonadaceae/Aeromonadales |
Ribose utilization |
Ribose |
LacI |
6 |
5 |
| RbsR - Ralstonia |
Ribose utilization |
Ribose |
LacI |
6 |
2 |
| RbsR - Shewanellaceae |
Ribose utilization |
Ribose |
LacI |
16 |
4 |
| RbsR - Staphylococcus |
Ribose utilization |
Ribose |
LacI |
7 |
2 |
| RbsR - Streptococcus |
Ribose utilization |
Ribose |
LacI |
8 |
4 |
| RbsR - Thermotogales |
Ribose utilization |
Ribose-5-phosphate |
LacI |
11 |
15 |
| RbsR - Vibrionales |
Ribose utilization |
Ribose |
LacI |
10 |
15 |
| RbsR2 - Staphylococcus |
Ribose utilization |
Ribose |
LacI |
7 |
4 |
| RegR - Streptococcus |
Hyaluronate utilization |
|
LacI |
8 |
13 |
| Rex - Actinomycetales |
Energy metabolism |
NADH |
Rex |
18 |
88 |
| Rex - Bacillales |
Energy metabolism |
NADH |
Rex |
11 |
62 |
| Rex - Chloroflexi |
Energy metabolism |
NADH |
Rex |
5 |
39 |
| Rex - Clostridiaceae |
Energy metabolism |
NADH |
Rex |
20 |
191 |
| Rex - Deinococcus-Thermus |
Energy metabolism |
NADH |
Rex |
5 |
10 |
| Rex - Desulfovibrionales |
Energy metabolism |
NADH |
Rex |
10 |
100 |
| Rex - Lactobacillaceae |
Energy metabolism |
NADH |
Rex |
15 |
70 |
| Rex - Staphylococcus |
Energy metabolism |
NADH |
Rex |
7 |
74 |
| Rex - Streptococcaceae |
Energy metabolism |
NADH |
Rex |
15 |
160 |
| Rex - Thermoanaerobacterales |
Energy metabolism |
NADH |
Rex |
3 |
42 |
| Rex - Thermotogales |
Energy metabolism |
NADH |
Rex |
11 |
114 |
| Rex1 - Thermotogales |
Energy metabolism |
NADH |
Rex |
11 |
10 |
| Rgg - Streptococcus |
|
|
XRE |
8 |
6 |
| RhaR - Bacillales |
Rhamnose utilization |
Rhamnose |
DeoR |
11 |
7 |
| RhaR - Chloroflexi |
Rhamnose utilization |
Rhamnose |
DeoR |
5 |
4 |
| RhaR - Thermotogales |
Rhamnose oligosaccharides utilization |
Rhamnose |
DeoR |
11 |
13 |
| RhgR - Bacillales |
Rhamnogalacturonides utilization |
|
AraC |
11 |
4 |
| RirA - Rhizobiales |
Iron homeostasis |
Iron ion, (Fe2+) |
Rrf2 |
8 |
100 |
| RmgR - Bacillales |
Rhamnogalacturonides utilization |
|
AraC |
11 |
8 |
| RocR - Bacillales |
Arginine degradation; Ornithine degradation |
Ornithine; L-citrulline |
Fis |
11 |
26 |
| RpoH - Desulfovibrionales |
Heat shock response |
Heat shock |
Sigma70 |
13 |
29 |
| RpoN - Desulfovibrionales |
Nitrogen metabolism |
|
Sigma54 |
13 |
519 |
| RutR - Alteromonadales |
Pyrimidine utilization |
Uracil |
TetR |
9 |
19 |
| RutR - Burkholderia |
Pyrimidine utilization |
Uracil |
TetR |
8 |
12 |
| RutR - Caulobacterales |
Pyrimidine utilization |
Uracil |
TetR |
4 |
4 |
| RutR - Enterobacteriales |
Pyrimidine utilization |
Uracil |
TetR |
12 |
13 |
| RutR - Moraxellaceae |
Pyrimidine utilization |
Uracil |
TetR |
4 |
8 |
| RutR - Oceanospirillales/Alteromonadales |
Pyrimidine utilization |
Uracil |
TetR |
12 |
32 |
| RutR - Pseudomonadales |
Pyrimidine utilization |
Uracil |
TetR |
8 |
29 |
| RutR - Ralstonia |
Pyrimidine utilization |
Uracil |
TetR |
6 |
4 |
| RutR - Rhizobiales |
Pyrimidine utilization |
Uracil |
TetR |
15 |
44 |
| RutR - Rhodobacterales |
Pyrimidine utilization |
Uracil |
TetR |
15 |
62 |
| RutR - Rhodospirillales |
Pyrimidine utilization |
Uracil |
TetR |
9 |
2 |
| RutR2 - Pseudomonadales |
Pyrimidine utilization |
Uracil |
TetR |
8 |
7 |
| RutR3 - Pseudomonadales |
Pyrimidine utilization |
Uracil |
TetR |
8 |
23 |
| RutR3 - Psychromonadaceae/Aeromonadales |
Pyrimidine utilization |
Uracil |
TetR |
6 |
4 |
| RutR3 - Vibrionales |
Pyrimidine utilization |
Uracil |
TetR |
10 |
4 |
| RutR4 - Alteromonadales |
Pyrimidine utilization |
Uracil |
TetR |
9 |
2 |
| RutR4 - Pseudomonadales |
Pyrimidine utilization |
Uracil |
TetR |
9 |
4 |
| SAG0938 - Streptococcus |
Hypothetical ABC transporter |
|
GntR |
8 |
15 |
| SO0072 - Shewanellaceae |
Hypothetical ABC transporter |
|
GntR |
16 |
14 |
| SO0082 - Shewanellaceae |
Benzoate degradation |
|
MerR |
16 |
5 |
| SO0193 - Shewanellaceae |
Fatty acid metabolism |
|
TetR |
16 |
11 |
| SO0734 - Shewanellaceae |
|
|
PadR |
16 |
4 |
| SO1393 - Shewanellaceae |
|
|
TetR |
16 |
20 |
| SO1415 - Shewanellaceae |
|
|
TetR |
16 |
18 |
| SO1578 - Shewanellaceae |
Glutathione metabolism |
|
TetR |
16 |
24 |
| SO1703 - Shewanellaceae |
Multidrug resistance |
|
TetR |
16 |
11 |
| SO1758 - Shewanellaceae |
|
|
DeoR |
16 |
11 |
| SO2282 - Shewanellaceae |
Amino acid efflux |
|
GntR |
16 |
23 |
| SO3277 - Shewanellaceae |
Multidrug resistance |
|
TetR |
16 |
64 |
| SO3385 - Shewanellaceae |
|
|
MerR |
16 |
7 |
| SO3393 - Shewanellaceae |
Drug resistance |
|
TetR |
16 |
78 |
| SO3494 - Shewanellaceae |
Multidrug resistance |
|
TetR |
16 |
31 |
| SO3627 - Shewanellaceae |
|
|
TetR |
16 |
4 |
| SO4326 - Shewanellaceae |
Multidrug resistance |
|
TetR |
16 |
8 |
| SO4468 - Shewanellaceae |
|
|
TetR |
16 |
22 |
| SO4705 - Shewanellaceae |
|
|
XRE |
16 |
32 |
| SP_1920 - Streptococcus |
Multidrug resistance |
|
MarR |
8 |
11 |
| SaeR - Staphylococcus |
Virulence |
SaeS, sensor histidine kinase |
OmpR |
7 |
45 |
| SahR - Caulobacterales |
Methionine metabolism |
S-adenosylhomocysteine |
ArsR |
4 |
14 |
| SahR - Desulfovibrionales |
Methionine metabolism |
|
ArsR |
11 |
31 |
| SahR - Desulfuromonadales |
Methionine metabolism |
S-adenosylhomocysteine |
ArsR |
9 |
6 |
| SahR - Oceanospirillales/Alteromonadales |
Methionine metabolism |
S-adenosylhomocysteine |
ArsR |
12 |
15 |
| SahR - Pseudomonadaceae |
Methionine metabolism |
S-adenosylhomocysteine |
ArsR |
8 |
8 |
| SahR - Rhizobiales |
Methionine metabolism |
S-adenosylhomocysteine |
ArsR |
15 |
36 |
| SahR - Rhodobacterales |
Methionine metabolism |
S-adenosylhomocysteine |
ArsR |
15 |
4 |
| SahR - Rhodospirillales |
Methionine metabolism |
S-adenosylhomocysteine |
ArsR |
9 |
17 |
| SahR - Sphingomonadales |
Methionine metabolism |
S-adenosylhomocysteine |
ArsR |
7 |
24 |
| ScrR - Bacillales |
Sucrose utilization |
|
LacI |
11 |
8 |
| ScrR - Shewanellaceae |
Sucrose utilization |
Sucrose |
LacI |
16 |
16 |
| ScrR - Staphylococcus |
Sucrose utilization |
Sucrose-6-phosphate |
LacI |
7 |
16 |
| ScrR - Streptococcus |
Sucrose utilization |
Sucrose |
LacI |
8 |
20 |
| SczA - Streptococcus |
Zinc resistance |
Zinc ion, (Zn2+) |
TetR |
8 |
12 |
| SdaR - Enterobacteriales |
Glucarate utilization; Galactarate utilization |
Glycerate |
SdaR |
12 |
31 |
| SdaR - Shewanellaceae |
Glycerate utilization |
Glycerate |
SdaR |
16 |
14 |
| SdpR - Bacillales |
Toxin-antitoxin system |
SdpI, signal transduction protein |
ArsR |
11 |
9 |
| SiaQ - Enterobacteriales |
Sialic acid utilization |
|
RpiR |
12 |
2 |
| SiaQ - Vibrionales |
Sialic acid utilization |
|
RpiR |
10 |
6 |
| SiaR - Enterobacteriales |
Sialic acid utilization |
Glucosamine-6-phosphate |
RpiR |
12 |
14 |
| SiaR - Pasteurellales |
Sialic acid utilization |
Glucosamine-6-phosphate |
RpiR |
9 |
23 |
| SiaR - Psychromonadaceae/Aeromonadales |
Sialic acid utilization |
Glucosamine-6-phosphate |
RpiR |
6 |
9 |
| SiaR - Vibrionales |
Sialic acid utilization |
Glucosamine-6-phosphate |
RpiR |
10 |
17 |
| SinR - Bacillales |
Biofilm formation |
SinI, antirepressor protein |
Xre |
11 |
16 |
| SmtB - Cyanobacteria |
Zinc resistance |
Zinc ion, (Zn2+) |
ArsR |
14 |
16 |
| SmtB - Desulfovibrionales |
Heavy metal resistance |
|
ArsR |
11 |
8 |
| SoxR - Enterobacteriales |
Superoxide stress response |
Paraquat |
MerR |
12 |
14 |
| SoxR - Shewanellaceae |
Superoxide stress response |
Paraquat |
MerR |
16 |
13 |
| SphR - Cyanobacteria |
Phosphate metabolism |
Inorganic phosphate |
OmpR |
14 |
77 |
| Spy0181 - Streptococcus |
Ascorbate utilization |
Ascorbate |
BglG |
8 |
9 |
| SufR - Cyanobacteria |
Iron-sulfur cluster biogenesis |
Iron-sulfur cluster redox state |
DeoR |
14 |
48 |
| TM0766 - Thermotogales |
|
|
GntR |
11 |
9 |
| TM1030 - Thermotogales |
Multidrug resistance |
|
TetR |
11 |
6 |
| TmcR - Desulfovibrionales |
Energy metabolism |
|
Rrf2 |
10 |
6 |
| TnrA - Bacillales |
Nitrogen assimilation |
Feedback-inhibited GlnA, glutamine synthetase; NrgA, Ammonium uptake protein; NrgB, ammonium uptake protein |
MerR |
11 |
303 |
| TorR - Shewanellaceae |
Trimethylamine oxide utilization |
Trimethylamine N-oxide |
OmpR |
16 |
33 |
| TreR - Bacillales |
Trehalose utilization |
Trehalose-6-phosphate |
GntR |
11 |
13 |
| TreR - Enterobacteriales |
Trehalose utilization |
Trehalose-6-phosphate |
LacI |
12 |
8 |
| TreR - Shewanellaceae |
Trehalose utilization |
Trehalose |
LacI |
16 |
11 |
| TreR - Staphylococcus |
Trehalose utilization |
Trehalose-6-phosphate |
GntR |
7 |
6 |
| TreR - Streptococcus |
Trehalose utilization |
Trehalose |
GntR |
8 |
10 |
| TreR - Thermotogales |
Trehalose utilization |
Trehalose |
ROK |
11 |
19 |
| TrpR - Enterobacteriales |
Tryptophan biosynthesis |
Tryptophan |
TrpR |
12 |
44 |
| TrpR - Moraxellaceae |
Tryptophan biosynthesis |
Tryptophan |
TrpR |
4 |
3 |
| TrpR - Oceanospirillales/Alteromonadales |
Tryptophan biosynthesis |
Tryptophan |
TrpR |
12 |
3 |
| TrpR - Pasteurellales |
Tryptophan biosynthesis |
Tryptophan |
TrpR |
9 |
24 |
| TrpR - Psychromonadaceae/Aeromonadales |
Tryptophan biosynthesis |
Tryptophan |
TrpR |
6 |
2 |
| TrpR - Shewanellaceae |
Aromatic amino acid metabolism |
Tryptophan |
TrpR |
16 |
30 |
| TrpR - Vibrionales |
Tryptophan biosynthesis |
Tryptophan |
TrpR |
10 |
25 |
| TrpR - Xanthomonadales |
Tryptophan biosynthesis |
Tryptophan |
TrpR |
4 |
3 |
| TyrR - Alteromonadales |
Aromatic amino acid metabolism |
Tyrosine; Phenylalanine |
Fis |
9 |
42 |
| TyrR - Enterobacteriales |
Aromatic amino acid metabolism |
Tyrosine; Phenylalanine |
Fis |
12 |
107 |
| TyrR - Pasteurellales |
Aromatic amino acid metabolism |
Tyrosine; Phenylalanine |
Fis |
9 |
29 |
| TyrR - Psychromonadaceae/Aeromonadales |
Aromatic amino acid metabolism |
Tyrosine; Phenylalanine |
Fis |
6 |
17 |
| TyrR - Shewanellaceae |
Amino acid utilization |
Tyrosine; Phenylalanine |
Fis |
16 |
309 |
| TyrR - Vibrionales |
Aromatic amino acid metabolism |
Tyrosine; Phenylalanine |
Fis |
12 |
67 |
| UctR - Thermotogales |
Sugar utilization |
|
RpiR |
11 |
5 |
| UgpR - Thermotogales |
Possibly alpha-mannosides utilization |
|
LacI |
11 |
9 |
| UgtR - Thermotogales |
Sugar utilization |
|
RpiR |
11 |
8 |
| UxaR - Thermotogales |
Pectin and galacturonate utilization |
|
GntR |
11 |
17 |
| UxuR - Enterobacteriales |
Glucuronate utilization |
Glucuronate |
GntR |
12 |
42 |
| UxuR - Oceanospirillales/Alteromonadales |
Glucuronate utilization |
Glucuronate |
GntR |
12 |
4 |
| UxuR - Pasteurellales |
Glucuronate utilization |
Glucuronate |
GntR |
9 |
19 |
| UxuR - Psychromonadaceae/Aeromonadales |
Glucuronate utilization |
Glucuronate |
GntR |
6 |
17 |
| UxuR - Rhodobacterales |
Glucuronate utilization |
Glucuronate |
GntR |
15 |
5 |
| UxuR - Vibrionales |
Glucuronate utilization |
Glucuronate |
GntR |
10 |
28 |
| XltR - Shewanellaceae |
Xylitol utilization |
Xylitol |
LacI |
16 |
8 |
| XylR - Bacillales |
Xylose utilization |
Xylose |
ROK |
11 |
41 |
| XylR - Enterococcaceae |
Xylose utilization |
Xylose |
ROK |
2 |
4 |
| XylR - Lactobacillaceae |
Xylose utilization |
Xylose |
ROK |
15 |
15 |
| XylR - Rhizobiales |
Xylose utilization |
Xylose |
ROK |
15 |
19 |
| XylR - Thermotogales |
Xylose utilization |
Xylose; Glucose |
ROK |
11 |
39 |
| XylR1 - Clostridiaceae |
Xylose utilization |
Xylose |
ROK |
20 |
22 |
| XylR2 - Clostridiaceae |
Xylose utilization |
Xylose |
ROK |
20 |
9 |
| YcnK - Bacillales |
Copper homeostasis |
Copper ion, (Cu+) |
DeoR |
11 |
5 |
| YcxD - Bacillales |
Multidrug efflux |
|
GntR (MocR/GabR) |
11 |
10 |
| YczG - Bacillales |
Oxidative stress response |
|
ArsR |
11 |
8 |
| YdfD/YisV - Bacillales |
Metabolite transport |
|
GntR (MocR/GabR) |
11 |
14 |
| YdfF - Bacillales |
|
|
ArsR |
11 |
10 |
| YdfI - Bacillales |
|
|
LuxR |
11 |
3 |
| YdfL - Bacillales |
Multidrug resistance |
|
MerR |
11 |
4 |
| YetL - Bacillales |
Flavonoids response |
Flavonoids |
MarR |
11 |
4 |
| YfmP - Bacillales |
Metal efflux |
|
MerR |
11 |
7 |
| YhcF - Bacillales |
Multidrug resistance |
|
GntR |
11 |
6 |
| YhdI/YdeL - Bacillales |
Metabolite transport |
|
GntR (MocR/GabR) |
11 |
12 |
| YhgD - Bacillales |
|
|
TetR |
11 |
10 |
| YiaJ - Enterobacteriales |
L-lyxose utilization |
Ascorbate-6-phosphate |
IclR |
12 |
8 |
| YisR - Bacillales |
Metabolite transport |
|
AraC |
11 |
6 |
| YkvZ - Bacillales |
Beta-glucosides utilization |
|
LacI |
11 |
8 |
| YodB/CatR - Bacillales |
Oxidative stress response |
Diamide; Quinone |
HxlR |
11 |
42 |
| YtcD - Bacillales |
|
|
HxlR |
11 |
10 |
| YtlI - Bacillales |
L-cystine transporter |
|
LysR |
11 |
2 |
| YtrA - Bacillales |
Hypothetical ABC transporter |
Acetoin |
GntR |
11 |
8 |
| YtrA - Staphylococcus |
Hypothetical ABC transporter |
|
GntR |
7 |
8 |
| YuaC - Bacillales |
Glycine betaine synthesis |
|
MarR |
11 |
4 |
| YvbF/YvaV - Bacillales |
Osmotic stress response |
|
MarR |
11 |
12 |
| YvfU - Bacillales |
Metabolite transport |
|
LuxR |
11 |
4 |
| YwbI - Bacillales |
Thiamine biosynthesis |
|
LysR |
11 |
8 |
| YwrC - Bacillales |
Chromate transport |
|
AsnC |
11 |
5 |
| YybA - Bacillales |
|
|
MarR |
11 |
25 |
| YybR/YdeP - Bacillales |
Oxidative stress response |
|
HxlR |
11 |
21 |
| ZntR - Enterobacteriales |
Zinc resistance |
Zinc ion, (Zn2+) |
MerR |
12 |
11 |
| ZntR - Shewanellaceae |
Zinc resistance; Cadmium resistance |
Zinc ion, (Zn2+); Cadmium, ion (Cd2+) |
MerR |
16 |
16 |
| ZnuR - Thermotogales |
Zinc homeostasis |
|
OmpR |
11 |
5 |
| Zur - Bacillales |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
11 |
63 |
| Zur - Chloroflexi |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
5 |
24 |
| Zur - Corynebacteriaceae |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
8 |
38 |
| Zur - Cyanobacteria |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
14 |
75 |
| Zur - Desulfovibrionales |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
13 |
7 |
| Zur - Enterobacteriales |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
12 |
65 |
| Zur - Ralstonia |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
6 |
20 |
| Zur - Staphylococcus |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
7 |
56 |
| Zur - Thermotogales |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
11 |
10 |
| zur - Actinobacteria |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
9 |
23 |
| zur - Alphaproteobacteria-1 |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
8 |
19 |
| zur - Alphaproteobacteria-2 |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
4 |
4 |
| zur - Alphaproteobacteria-3 |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
12 |
19 |
| zur - Alphaproteobacteria-4 |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
8 |
17 |
| zur - Bacilli |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
14 |
69 |
| zur - Betaproteobacteria-1 |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
6 |
18 |
| zur - Clostridia |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
6 |
12 |
| zur - Cyanobacteria |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
9 |
15 |
| zur - Gammaproteobacteria |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
34 |
118 |
| zur - Proteobacteria |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
11 |
21 |
| zur - Thermotoga |
Zinc homeostasis |
Zinc ion, (Zn2+) |
Fur |
5 |
6 |