Bioenergy related regulogs
The reconstructed regulons in this subset mainly include genes encoding catabolic enzymes and associated uptake transporters that participate in the carbohydrate utilization metabolic pathways. Most of these regulons are relatively small in size (local regulons) and have a specific carbohydrate as an inducer/co-repressor.
| Transcription factors | 24 |
| Regulogs | 29 |
| TF families | 8 |
| Genomes | 74 |
| Binding sites | 1488 |
| Transcription factor | Function | Effector | Genomes | Sites |
|---|---|---|---|---|
| AgaR - Shewanellaceae | N-acetylgalactosamine utilization | N-acetylgalactosamine | 16 | 10 |
| AlgR - Shewanellaceae | Alginate utilization | Glucuronate; Galacturonate | 16 | 2 |
| AraR - Shewanellaceae | Arabinose utilization | Arabinose | 16 | 30 |
| ArgR - Shewanellaceae | Arginine biosynthesis; Arginine degradation | Arginine | 16 | 502 |
| BglR - Shewanellaceae | Beta-glucosides utilization | Beta-glucoside | 16 | 24 |
| DasR - Streptomyces | N-acetylglucosamine utilization | N-acetylglucosamine | 2 | 29 |
| FabR - Shewanellaceae | Fatty acid biosynthesis | Unsaturated acyl-ACP; Unsaturated acyl-CoA | 16 | 118 |
| FadR - Shewanellaceae | Fatty acid degradation | Palmitoyl-CoA; Oleoyl-CoA | 16 | 78 |
| GlmR - Shewanellaceae | Lipopolysaccharide biosynthesis | Glucosamine-6-phosphate | 16 | 16 |
| GntR - Shewanellaceae | Gluconate utilization | Gluconate | 16 | 4 |
| HexR - Shewanellaceae | Central carbohydrate metabolism | 2-keto-3-deoxy-6-phosphogluconate | 16 | 316 |
| LldR - Shewanellaceae | Lactate utilization | L-lactate | 16 | 14 |
| MalR - Shewanellaceae | Maltodextrin utilization | Maltose | 16 | 68 |
| ManR1 - Shewanellaceae | Mannose utilization | Mannose | 16 | 4 |
| ManR2 - Shewanellaceae | Mannose utilization | Mannose | 16 | 5 |
| NagR - Shewanellaceae | N-acetylglucosamine utilization | N-acetylglucosamine | 16 | 105 |
| NanR - Enterobacteriales | Sialic acid utilization | N-acetylneuraminic acid | 2 | 6 |
| NanR - Shewanellaceae | Sialic acid utilization | N-acetylneuraminic acid | 16 | 4 |
| NanX - Gammaproteobacteria | Sialic acid utilization | N-acetylneuraminic acid | 10 | 27 |
| RbsR - Shewanellaceae | Ribose utilization | Ribose | 16 | 4 |
| ScrR - Shewanellaceae | Sucrose utilization | Sucrose | 16 | 16 |
| SdaR - Shewanellaceae | Glycerate utilization | Glycerate | 16 | 14 |
| TreR - Shewanellaceae | Trehalose utilization | Trehalose | 16 | 11 |
| UxuR - Oceanospirillales/Alteromonadales | Glucuronate utilization | Glucuronate | 12 | 4 |
| UxuR - Pasteurellales | Glucuronate utilization | Glucuronate | 9 | 19 |
| UxuR - Psychromonadaceae/Aeromonadales | Glucuronate utilization | Glucuronate | 6 | 17 |
| UxuR - Rhodobacterales | Glucuronate utilization | Glucuronate | 15 | 5 |
| UxuR - Vibrionales | Glucuronate utilization | Glucuronate | 10 | 28 |
| XltR - Shewanellaceae | Xylitol utilization | Xylitol | 16 | 8 |